Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Reverse (-)

67265676 .. 67266539

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035471

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCACAATACAATGATATTGACTTCCTCTTGAATCCTTGGATGACCACTACGGATGGAAATAGTGATTGTGCAGCTGTGGCAGTTGATAAGATTGGTCCTTATACCAAGGGAGAACAATCTCATTCTATATGTGCTCAAGTTGAGGATACAAATGAGCAGAAGGCAAAGGAACTCTTGAACAGTTTTCCTTGTCTTGAAGAGTGTGATGTGAGATCCAAAGAAGGTTCAGATGAAGTTGAAGCTAGCAGTATCCCCCCACTTATTCCTTTTATACCATTTGCAATGAAACTTGACCATATTCAGCAGAGCATCCGGTCTTTCCTTGAGACGATCATTGCTGGAAACACTCAAAATCTACATAAAGAAATAATGGTCTTCGGAAGAAGAACTTATCAAAAAATTCTTGCAATGGAGAAAAAAGGGGCTCAAGTCGTACAATGTGATTCAGAGCTACTAGTGGACATTCTACTCAATTCTGCAATATGTTTAATGTGGTATGATTGCAGAAACATTGGCAAAAACACAACTGCTCTTGATAAATTAAAGCTTCTTCATGCTTACCTTTGTACATTGAGAGCACCGCCACAAATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.39

Weight (kDa)

5.1

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	402
AfaI	GTAC	2 cut(s)	438, 571
AgsI	TTSAA	4 cut(s)	34, 181, 200, 242
AhlI	ACTAGT	1 cut(s)	457
AluBI	AGCT	4 cut(s)	77, 245, 454, 550
AluI	AGCT	4 cut(s)	77, 245, 454, 550
Alw21I	GWGCWC	2 cut(s)	139, 583
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	370
Bbv12I	GWGCWC	2 cut(s)	139, 583
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	50
BciVI	GTATCC	2 cut(s)	142, 263
BcoDI	GTCTC	1 cut(s)	323
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	2 cut(s)	246, 458
BfuI	GTATCC	2 cut(s)	142, 263
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	321
BmtI	GCTAGC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	370
BpuEI	CTTGAG	3 cut(s)	123, 347, 414
BsaJI	CCNNGG	2 cut(s)	38, 108
BsaWI	WCCGGW	1 cut(s)	315
Bse3DI	GCAATG	3 cut(s)	291, 336, 417
BseDI	CCNNGG	2 cut(s)	38, 108
BseGI	GGATG	3 cut(s)	48, 61, 312
BseMI	GCAATG	3 cut(s)	291, 336, 417
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	139, 583
BsiSI	CCGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	3 cut(s)	139, 430, 583
Bsp1407I	TGTACA	1 cut(s)	569
Bsp143I	GATC	2 cut(s)	215, 333
BspACI	CCGC	1 cut(s)	584
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	210
BsrDI	GCAATG	3 cut(s)	291, 336, 417
BsrGI	TGTACA	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	38, 108
BssMI	GATC	2 cut(s)	215, 333
BssT1I	CCWWGG	2 cut(s)	38, 108
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	48, 61, 312
BstKTI	GATC	2 cut(s)	218, 336
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	215, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuI	GTATCC	2 cut(s)	142, 263
BtsCI	GGATG	3 cut(s)	48, 61, 312
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	437, 570
CviAII	CATG	1 cut(s)	557
CviJI	RGCY	5 cut(s)	77, 245, 428, 454, 550
CviKI_1	RGCY	5 cut(s)	77, 245, 428, 454, 550
CviQI	GTAC	2 cut(s)	437, 570
DpnI	GATC	2 cut(s)	217, 335
DpnII	GATC	2 cut(s)	215, 333
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	38, 108
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	38, 108
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	2 cut(s)	38, 108
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	1 cut(s)	560
FaiI	YATR	9 cut(s)	105, 131, 133, 275, 300, 363, 487, 501, 558
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 376, 408
FatI	CATG	1 cut(s)	556
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	3 cut(s)	55, 68, 299
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	246, 458
GluI	GCNGC	1 cut(s)	75
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	1 cut(s)	560
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	2 cut(s)	34, 446
HpaII	CCGG	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	232, 383, 451
Hpy188III	TCNNGA	4 cut(s)	31, 178, 197, 536
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	157, 218
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	74, 284, 410, 482, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	560
Kzo9I	GATC	2 cut(s)	215, 333
LpnPI	CCDG	2 cut(s)	327, 329
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	246, 458
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	217, 335
MboI	GATC	2 cut(s)	215, 333
MboII	GAAGA	5 cut(s)	212, 370, 396, 399, 545
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	3 cut(s)	139, 430, 583
MluCI	AATT	3 cut(s)	402, 475, 542
MnlI	CCTC	2 cut(s)	38, 139
MseI	TTAA	2 cut(s)	491, 545
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	215, 333
NheI	GCTAGC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	560
NmuCI	GTSAC	1 cut(s)	3
PfeI	GAWTC	2 cut(s)	34, 446
PkrI	GCNGC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	438, 571
RsaNI	GTAC	2 cut(s)	437, 570
SaqAI	TTAA	2 cut(s)	491, 545
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	215, 333
Sau96I	GGNCC	1 cut(s)	98
SduI	GDGCHC	3 cut(s)	139, 430, 583
SetI	ASST	6 cut(s)	79, 229, 247, 456, 552, 567
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	138, 326, 429
SmoI	CTYRAG	3 cut(s)	138, 326, 429
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	3 cut(s)	402, 475, 542
SsiI	CCGC	1 cut(s)	584
SspMI	CTAG	2 cut(s)	246, 458
StyI	CCWWGG	2 cut(s)	38, 108
TaaI	ACNGT	1 cut(s)	185
TasI	AATT	3 cut(s)	402, 475, 542
TatI	WGTACW	1 cut(s)	569
TfiI	GAWTC	2 cut(s)	34, 446
Tru1I	TTAA	2 cut(s)	491, 545
Tru9I	TTAA	2 cut(s)	491, 545
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	249, 302, 545
TspGWI	ACGGA	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	402
XspI	CTAG	2 cut(s)	246, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.