Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017163.1

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Forward (+)

3669 .. 4887

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017163.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcgaactcgcttcctcaacatcgactacttcacccccactccactccaaaccctagaaaccctaaccttcctccacctccccatccctaacctccctcctcaccccaacctctccacttccaatgtcctccaaaacctacgcctcgatcccgtcctccaagtctccctccaaatcgaacagttgccgatcaccgccgcgctctccaagttcttctccgacgtcctccctcagaacctccccgtctacatcgcggacttcgaggctccgaaacggcgcagttttggttccggcagcagtgctgttcgggtttcggagcaggaagccgatgttctcagaaaagagaagggactgcagaatcggatagctgccggttcagagtctccggagactgaatttcaaaaagaggatagtggcagaagagatggggatagtgatgcactccagtgtgaagtactccaatttgaaacacaagagctggatgtattcttggaaaatgcttacatttatgagaaagatgagatcccgattctttctgaagttccagaggttgaaatactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.13

Weight (kDa)

4.49

Isoelectric Point (pI)

67.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	2 cut(s)	200, 254
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	3 cut(s)	195, 198, 254
AclWI	GGATC	2 cut(s)	143, 517
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	456
AgsI	TTSAA	3 cut(s)	401, 467, 554
AleI	CACNNNNGTG	1 cut(s)	445
AluBI	AGCT	2 cut(s)	368, 478
AluI	AGCT	2 cut(s)	368, 478
Alw26I	GTCTC	3 cut(s)	169, 383, 387
AlwI	GGATC	2 cut(s)	143, 517
Aor13HI	TCCGGA	1 cut(s)	385
ApeKI	GCWGC	2 cut(s)	294, 368
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	202, 279
AsuHPI	GGTGA	3 cut(s)	25, 95, 184
BbvI	GCAGC	2 cut(s)	306, 355
BccI	CCATC	2 cut(s)	92, 419
BceAI	ACGGC	1 cut(s)	290
BcoDI	GTCTC	3 cut(s)	169, 383, 387
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	3 cut(s)	198, 295, 369
BlsI	GCNGC	3 cut(s)	199, 296, 370
BmcAI	AGTACT	1 cut(s)	456
BmiI	GGNNCC	2 cut(s)	267, 289
BmsI	GCATC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	445
BseAI	TCCGGA	1 cut(s)	385
BseGI	GGATG	2 cut(s)	84, 487
BseMII	CTCAG	2 cut(s)	245, 349
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	306, 355
Bsh1236I	CGCG	2 cut(s)	200, 254
BsiSI	CCGG	3 cut(s)	291, 372, 386
BslFI	GGGAC	1 cut(s)	363
BsmAI	GTCTC	3 cut(s)	169, 383, 387
BsmFI	GGGAC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	148, 189, 522
BspACI	CCGC	3 cut(s)	195, 198, 254
BspCNI	CTCAG	2 cut(s)	244, 348
BspEI	TCCGGA	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	200, 254
BspLI	GGNNCC	2 cut(s)	267, 289
BspMAI	CTGCAG	1 cut(s)	357
BspPI	GGATC	2 cut(s)	143, 517
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	371
BssMI	GATC	3 cut(s)	148, 189, 522
BssNI	GRCGYC	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	231, 335
BstF5I	GGATG	2 cut(s)	84, 487
BstFNI	CGCG	2 cut(s)	200, 254
BstHHI	GCGC	2 cut(s)	202, 279
BstKTI	GATC	3 cut(s)	151, 192, 525
BstMAI	GTCTC	3 cut(s)	169, 383, 387
BstMBI	GATC	3 cut(s)	148, 189, 522
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	2 cut(s)	200, 254
BstV1I	GCAGC	2 cut(s)	306, 355
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	84, 487
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 452
CfoI	GCGC	2 cut(s)	202, 279
Cfr10I	RCCGGY	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	455
CviJI	RGCY	4 cut(s)	266, 326, 368, 478
CviKI_1	RGCY	4 cut(s)	266, 326, 368, 478
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	231, 335
DpnI	GATC	3 cut(s)	150, 191, 524
DpnII	GATC	3 cut(s)	148, 189, 522
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	558
FaiI	YATR	1 cut(s)	510
FaqI	GGGAC	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	198, 295, 369
FokI	GGATG	2 cut(s)	71, 494
Fsp4HI	GCNGC	3 cut(s)	198, 295, 369
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	2 cut(s)	201, 278
GluI	GCNGC	3 cut(s)	198, 295, 369
GsuI	CTGGAG	1 cut(s)	428
HapII	CCGG	3 cut(s)	291, 372, 386
HhaI	GCGC	2 cut(s)	202, 279
Hin1I	GRCGYC	1 cut(s)	222
Hin6I	GCGC	2 cut(s)	200, 277
HinP1I	GCGC	2 cut(s)	200, 277
HinfI	GANTC	3 cut(s)	358, 380, 529
HpaII	CCGG	3 cut(s)	291, 372, 386
HphI	GGTGA	3 cut(s)	25, 95, 184
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	8 cut(s)	220, 234, 270, 316, 338, 363, 379, 538
Hpy188III	TCNNGA	3 cut(s)	386, 526, 545
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	79, 340
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	355, 440
HpyF3I	CTNAG	2 cut(s)	231, 335
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
HspAI	GCGC	2 cut(s)	200, 277
Kpn2I	TCCGGA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	148, 189, 522
LmnI	GCTCC	2 cut(s)	271, 316
LpnPI	CCDG	7 cut(s)	304, 305, 385, 399, 458, 464, 558
Lsp1109I	GCAGC	2 cut(s)	306, 355
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	222
MalI	GATC	3 cut(s)	150, 191, 524
MboI	GATC	3 cut(s)	148, 189, 522
MboII	GAAGA	2 cut(s)	205, 432
MflI	RGATCY	1 cut(s)	522
MluCI	AATT	2 cut(s)	395, 461
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	243
MroI	TCCGGA	1 cut(s)	385
MslI	CAYNNNNRTG	1 cut(s)	445
MspI	CCGG	3 cut(s)	291, 372, 386
MvnI	CGCG	2 cut(s)	200, 254
NdeII	GATC	3 cut(s)	148, 189, 522
NlaIV	GGNNCC	2 cut(s)	267, 289
OliI	CACNNNNGTG	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	358, 529
PkrI	GCNGC	3 cut(s)	199, 296, 370
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	267, 289
PstI	CTGCAG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	522
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	445
SatI	GCNGC	3 cut(s)	198, 295, 369
Sau3AI	GATC	3 cut(s)	148, 189, 522
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	389
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	445
Sse9I	AATT	2 cut(s)	395, 461
SsiI	CCGC	3 cut(s)	195, 198, 254
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	183
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	24, 147, 177, 261
TasI	AATT	2 cut(s)	395, 461
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	358, 529
TscAI	CASTG	2 cut(s)	304, 452
TseI	GCWGC	2 cut(s)	294, 368
TspRI	CASTG	2 cut(s)	304, 452
XapI	RAATTY	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	56
ZraI	GACGTC	1 cut(s)	223
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.