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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52290 |
| fragaria_vesca | FvH4_7g29470 FvH4_7g29470 |
| malus_domestica | MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1 |
| prunus_persica | Prupe.2G294300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0377251 |
| rosa_laevigata | RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471 |
| rosa_multiflora | Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00281340 |
| rosa_rugosa | Rorug01G0402700 Rorug01G0402700 |
| rosa_samantha | Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900 |
| rosa_wichuraiana | Rw1G036840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 626 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2296 |
| Acc36I | ACCTGC | 3 cut(s) | 626, 2409, 2895 |
| AccBSI | CCGCTC | 1 cut(s) | 664 |
| AciI | CCGC | 3 cut(s) | 560, 662, 2749 |
| AclWI | GGATC | 4 cut(s) | 725, 2081, 2094, 2267 |
| AcsI | RAATTY | 5 cut(s) | 305, 1272, 2366, 2489, 3008 |
| AcuI | CTGAAG | 3 cut(s) | 1719, 1917, 1926 |
| AfaI | GTAC | 8 cut(s) | 99, 480, 976, 1261, 1477, 2000, 2537, 3078 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1201, 1955, 2407, 2928, 2950, 2951, 3122 |
| AflIII | ACRYGT | 1 cut(s) | 383 |
| AjnI | CCWGG | 3 cut(s) | 447, 1575, 2864 |
| Alw21I | GWGCWC | 1 cut(s) | 1300 |
| Alw26I | GTCTC | 8 cut(s) | 399, 1193, 1252, 1506, 1785, 1809, 2373, 2638 |
| Alw44I | GTGCAC | 1 cut(s) | 1296 |
| AlwI | GGATC | 4 cut(s) | 725, 2081, 2094, 2267 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1491, 2597, 2865 |
| Ama87I | CYCGRG | 1 cut(s) | 2240 |
| AoxI | GGCC | 3 cut(s) | 915, 1946, 2351 |
| ApaLI | GTGCAC | 1 cut(s) | 1296 |
| ApeKI | GCWGC | 8 cut(s) | 1491, 1562, 1565, 1568, 1591, 1641, 2096, 2543 |
| ApoI | RAATTY | 5 cut(s) | 305, 1272, 2366, 2489, 3008 |
| AspLEI | GCGC | 2 cut(s) | 2913, 2971 |
| AspS9I | GGNCC | 7 cut(s) | 1946, 2298, 2342, 2351, 2627, 2754, 3224 |
| AsuC2I | CCSGG | 1 cut(s) | 290 |
| AsuHPI | GGTGA | 3 cut(s) | 995, 1901, 2567 |
| AsuNHI | GCTAGC | 2 cut(s) | 442, 1115 |
| AvaI | CYCGRG | 1 cut(s) | 2240 |
| AvaII | GGWCC | 5 cut(s) | 2298, 2342, 2627, 2754, 3224 |
| BaeGI | GKGCMC | 1 cut(s) | 1300 |
| BamHI | GGATCC | 1 cut(s) | 2086 |
| BauI | CACGAG | 1 cut(s) | 2786 |
| BbsI | GAAGAC | 2 cut(s) | 1761, 1932 |
| Bbv12I | GWGCWC | 1 cut(s) | 1300 |
| BbvI | GCAGC | 8 cut(s) | 1478, 1549, 1577, 1580, 1603, 1628, 2108, 2530 |
| BccI | CCATC | 5 cut(s) | 62, 692, 1544, 3004, 3206 |
| BceAI | ACGGC | 3 cut(s) | 930, 939, 2226 |
| BciT130I | CCWGG | 3 cut(s) | 449, 1577, 2866 |
| BciVI | GTATCC | 4 cut(s) | 1133, 2200, 2515, 2769 |
| BclI | TGATCA | 1 cut(s) | 2188 |
| BcnI | CCSGG | 1 cut(s) | 290 |
| BcoDI | GTCTC | 8 cut(s) | 399, 1193, 1252, 1506, 1785, 1809, 2373, 2638 |
| BfaI | CTAG | 6 cut(s) | 443, 488, 1116, 1229, 2163, 2940 |
| BfmI | CTRYAG | 4 cut(s) | 1350, 1375, 1563, 2094 |
| BfuAI | ACCTGC | 3 cut(s) | 626, 2409, 2895 |
| BfuI | GTATCC | 4 cut(s) | 1133, 2200, 2515, 2769 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 923 |
| BglII | AGATCT | 1 cut(s) | 1085 |
| BisI | GCNGC | 9 cut(s) | 560, 1492, 1563, 1566, 1569, 1592, 1642, 2097, 2544 |
| BlpI | GCTNAGC | 1 cut(s) | 665 |
| BlsI | GCNGC | 9 cut(s) | 561, 1493, 1564, 1567, 1570, 1593, 1643, 2098, 2545 |
| BmcAI | AGTACT | 3 cut(s) | 99, 1261, 1477 |
| Bme1390I | CCNGG | 4 cut(s) | 290, 449, 1577, 2866 |
| Bme18I | GGWCC | 5 cut(s) | 2298, 2342, 2627, 2754, 3224 |
| BmeT110I | CYCGRG | 1 cut(s) | 2240 |
| BmgT120I | GGNCC | 7 cut(s) | 1946, 2298, 2342, 2351, 2627, 2754, 3224 |
| BmiI | GGNNCC | 8 cut(s) | 268, 2055, 2088, 2238, 2343, 2628, 2640, 2665 |
| BmrFI | CCNGG | 4 cut(s) | 290, 449, 1577, 2866 |
| BmsI | GCATC | 8 cut(s) | 70, 578, 739, 772, 1191, 2056, 2065, 2493 |
| BmtI | GCTAGC | 2 cut(s) | 446, 1119 |
| BpiI | GAAGAC | 2 cut(s) | 1761, 1932 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1767, 1799 |
| BpmI | CTGGAG | 3 cut(s) | 1234, 1794, 2072 |
| Bpu10I | CCTNAGC | 2 cut(s) | 438, 2508 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 665 |
| BpuEI | CTTGAG | 2 cut(s) | 623, 2593 |
| BpuMI | CCSGG | 1 cut(s) | 290 |
| BsaBI | GATNNNNATC | 2 cut(s) | 594, 657 |
| BsaI | GGTCTC | 1 cut(s) | 1809 |
| BsaJI | CCNNGG | 7 cut(s) | 447, 908, 978, 1576, 2484, 2864, 2927 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2743, 2773 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1201, 1955, 2407, 2928, 2950, 2951, 3122 |
| Bse1I | ACTGG | 8 cut(s) | 277, 395, 772, 1328, 1525, 2757, 3074, 3127 |
| Bse3DI | GCAATG | 6 cut(s) | 470, 854, 1161, 1287, 1466, 2971 |
| Bse8I | GATNNNNATC | 2 cut(s) | 594, 657 |
| BseBI | CCWGG | 3 cut(s) | 449, 1577, 2866 |
| BseDI | CCNNGG | 7 cut(s) | 447, 908, 978, 1576, 2484, 2864, 2927 |
| BseGI | GGATG | 8 cut(s) | 130, 329, 399, 510, 1108, 1610, 2996, 3086 |
| BseJI | GATNNNNATC | 2 cut(s) | 594, 657 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1201, 1955, 2407, 2928, 2950, 2951, 3122 |
| BseMI | GCAATG | 6 cut(s) | 470, 854, 1161, 1287, 1466, 2971 |
| BseMII | CTCAG | 9 cut(s) | 429, 679, 1188, 1357, 1463, 1560, 1968, 2288, 2499 |
| BseNI | ACTGG | 8 cut(s) | 277, 395, 772, 1328, 1525, 2757, 3074, 3127 |
| BseRI | GAGGAG | 2 cut(s) | 1918, 2750 |
| BseSI | GKGCMC | 1 cut(s) | 1300 |
| BseXI | GCAGC | 8 cut(s) | 1478, 1549, 1577, 1580, 1603, 1628, 2108, 2530 |
| BsgI | GTGCAG | 1 cut(s) | 963 |
| BshFI | GGCC | 3 cut(s) | 917, 1948, 2353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1300 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2240 |
| BsiSI | CCGG | 1 cut(s) | 290 |
| BslFI | GGGAC | 6 cut(s) | 149, 208, 2302, 2355, 2847, 2945 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1201, 1955, 2407, 2928, 2950, 2951, 3122 |
| BsmAI | GTCTC | 8 cut(s) | 399, 1193, 1252, 1506, 1785, 1809, 2373, 2638 |
| BsmBI | CGTCTC | 2 cut(s) | 1193, 1785 |
| BsmFI | GGGAC | 6 cut(s) | 149, 208, 2302, 2355, 2847, 2945 |
| BsmI | GAATGC | 1 cut(s) | 1494 |
| BsnI | GGCC | 3 cut(s) | 917, 1948, 2353 |
| Bso31I | GGTCTC | 1 cut(s) | 1809 |
| BsoBI | CYCGRG | 1 cut(s) | 2240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1300 |
| Bsp143I | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 665 |
| Bsp19I | CCATGG | 1 cut(s) | 2484 |
| BspACI | CCGC | 3 cut(s) | 560, 662, 2749 |
| BspANI | GGCC | 3 cut(s) | 917, 1948, 2353 |
| BspCNI | CTCAG | 9 cut(s) | 430, 678, 1189, 1356, 1464, 1559, 1967, 2287, 2500 |
| BspHI | TCATGA | 1 cut(s) | 1807 |
| BspLI | GGNNCC | 8 cut(s) | 268, 2055, 2088, 2238, 2343, 2628, 2640, 2665 |
| BspMAI | CTGCAG | 4 cut(s) | 1354, 1379, 1567, 2098 |
| BspMI | ACCTGC | 3 cut(s) | 626, 2409, 2895 |
| BspOI | GCTAGC | 2 cut(s) | 446, 1119 |
| BspPI | GGATC | 4 cut(s) | 725, 2081, 2094, 2267 |
| BspTNI | GGTCTC | 1 cut(s) | 1809 |
| BsrBI | CCGCTC | 1 cut(s) | 664 |
| BsrDI | GCAATG | 6 cut(s) | 470, 854, 1161, 1287, 1466, 2971 |
| BsrI | ACTGG | 8 cut(s) | 277, 395, 772, 1328, 1525, 2757, 3074, 3127 |
| BssECI | CCNNGG | 7 cut(s) | 447, 908, 978, 1576, 2484, 2864, 2927 |
| BssMI | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| BssSI | CACGAG | 1 cut(s) | 2786 |
| BssT1I | CCWWGG | 2 cut(s) | 978, 2484 |
| Bst2BI | CACGAG | 1 cut(s) | 2786 |
| Bst2UI | CCWGG | 3 cut(s) | 449, 1577, 2866 |
| Bst4CI | ACNGT | 7 cut(s) | 422, 1055, 1204, 1534, 1767, 2593, 2861 |
| Bst6I | CTCTTC | 2 cut(s) | 1065, 1936 |
| BstC8I | GCNNGC | 6 cut(s) | 259, 286, 444, 1117, 1573, 2915 |
| BstDSI | CCRYGG | 2 cut(s) | 2484, 2927 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2405 |
| BstF5I | GGATG | 8 cut(s) | 130, 329, 399, 510, 1108, 1610, 2996, 3086 |
| BstHHI | GCGC | 2 cut(s) | 2913, 2971 |
| BstKTI | GATC | 7 cut(s) | 577, 733, 1088, 2089, 2191, 2262, 2434 |
| BstMAI | GTCTC | 8 cut(s) | 399, 1193, 1252, 1506, 1785, 1809, 2373, 2638 |
| BstMBI | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| BstNI | CCWGG | 3 cut(s) | 449, 1577, 2866 |
| BstSCI | CCNGG | 4 cut(s) | 288, 447, 1575, 2864 |
| BstSFI | CTRYAG | 4 cut(s) | 1350, 1375, 1563, 2094 |
| BstSLI | GKGCMC | 1 cut(s) | 1300 |
| BstV1I | GCAGC | 8 cut(s) | 1478, 1549, 1577, 1580, 1603, 1628, 2108, 2530 |
| BstV2I | GAAGAC | 2 cut(s) | 1761, 1932 |
| BstX2I | RGATCY | 3 cut(s) | 1085, 2086, 2259 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1537, 2485 |
| BstYI | RGATCY | 3 cut(s) | 1085, 2086, 2259 |
| BsuI | GTATCC | 4 cut(s) | 1133, 2200, 2515, 2769 |
| BsuRI | GGCC | 3 cut(s) | 917, 1948, 2353 |
| BtgI | CCRYGG | 2 cut(s) | 2484, 2927 |
| BtgZI | GCGATG | 1 cut(s) | 1432 |
| BtsCI | GGATG | 8 cut(s) | 130, 329, 399, 510, 1108, 1610, 2996, 3086 |
| BtsIMutI | CAGTG | 6 cut(s) | 815, 1335, 1530, 1941, 2070, 2764 |
| BveI | ACCTGC | 3 cut(s) | 626, 2409, 2895 |
| Cac8I | GCNNGC | 6 cut(s) | 259, 286, 444, 1117, 1573, 2915 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1491, 2597, 2865 |
| CciI | TCATGA | 1 cut(s) | 1807 |
| CfoI | GCGC | 2 cut(s) | 2913, 2971 |
| Cfr13I | GGNCC | 7 cut(s) | 1946, 2298, 2342, 2351, 2627, 2754, 3224 |
| CseI | GACGC | 1 cut(s) | 1767 |
| Csp6I | GTAC | 8 cut(s) | 98, 479, 975, 1260, 1476, 1999, 2536, 3077 |
| CviQI | GTAC | 8 cut(s) | 98, 479, 975, 1260, 1476, 1999, 2536, 3077 |
| DpnI | GATC | 7 cut(s) | 576, 732, 1087, 2088, 2190, 2261, 2433 |
| DpnII | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| DraI | TTTAAA | 1 cut(s) | 355 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2296 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2296 |
| Eam1104I | CTCTTC | 2 cut(s) | 1065, 1936 |
| EarI | CTCTTC | 2 cut(s) | 1065, 1936 |
| EciI | GGCGGA | 1 cut(s) | 2764 |
| Eco130I | CCWWGG | 2 cut(s) | 978, 2484 |
| Eco31I | GGTCTC | 1 cut(s) | 1809 |
| Eco32I | GATATC | 1 cut(s) | 2325 |
| Eco47I | GGWCC | 5 cut(s) | 2298, 2342, 2627, 2754, 3224 |
| Eco57I | CTGAAG | 3 cut(s) | 1719, 1917, 1926 |
| Eco88I | CYCGRG | 1 cut(s) | 2240 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2405 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2627 |
| EcoRI | GAATTC | 1 cut(s) | 2489 |
| EcoRII | CCWGG | 3 cut(s) | 447, 1575, 2864 |
| EcoRV | GATATC | 1 cut(s) | 2325 |
| EcoT14I | CCWWGG | 2 cut(s) | 978, 2484 |
| ErhI | CCWWGG | 2 cut(s) | 978, 2484 |
| Esp3I | CGTCTC | 2 cut(s) | 1193, 1785 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1031, 1063, 1246, 1278 |
| FaqI | GGGAC | 6 cut(s) | 149, 208, 2302, 2355, 2847, 2945 |
| FauNDI | CATATG | 1 cut(s) | 517 |
| FbaI | TGATCA | 1 cut(s) | 2188 |
| Fnu4HI | GCNGC | 9 cut(s) | 560, 1492, 1563, 1566, 1569, 1592, 1642, 2097, 2544 |
| FokI | GGATG | 8 cut(s) | 137, 316, 406, 517, 1115, 1597, 2983, 3073 |
| Fsp4HI | GCNGC | 9 cut(s) | 560, 1492, 1563, 1566, 1569, 1592, 1642, 2097, 2544 |
| FspBI | CTAG | 6 cut(s) | 443, 488, 1116, 1229, 2163, 2940 |
| GlaI | GCGC | 2 cut(s) | 2912, 2970 |
| GluI | GCNGC | 9 cut(s) | 560, 1492, 1563, 1566, 1569, 1592, 1642, 2097, 2544 |
| GsuI | CTGGAG | 3 cut(s) | 1234, 1794, 2072 |
| HaeIII | GGCC | 3 cut(s) | 917, 1948, 2353 |
| HapII | CCGG | 1 cut(s) | 290 |
| HgaI | GACGC | 1 cut(s) | 1767 |
| HhaI | GCGC | 2 cut(s) | 2913, 2971 |
| Hin6I | GCGC | 2 cut(s) | 2911, 2969 |
| HinP1I | GCGC | 2 cut(s) | 2911, 2969 |
| HindIII | AAGCTT | 3 cut(s) | 536, 1413, 3197 |
| HpaII | CCGG | 1 cut(s) | 290 |
| HphI | GGTGA | 3 cut(s) | 995, 1901, 2567 |
| Hpy166II | GTNNAC | 7 cut(s) | 986, 1216, 1298, 1333, 1530, 1892, 2461 |
| Hpy8I | GTNNAC | 7 cut(s) | 986, 1216, 1298, 1333, 1530, 1892, 2461 |
| HpyAV | CCTTC | 5 cut(s) | 1149, 1502, 1743, 2718, 3017 |
| HpyCH4III | ACNGT | 7 cut(s) | 422, 1055, 1204, 1534, 1767, 2593, 2861 |
| HpyCH4IV | ACGT | 4 cut(s) | 383, 546, 1312, 1894 |
| HpySE526I | ACGT | 4 cut(s) | 383, 546, 1312, 1894 |
| HspAI | GCGC | 2 cut(s) | 2911, 2969 |
| Ksp22I | TGATCA | 1 cut(s) | 2188 |
| Kzo9I | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| LmnI | GCTCC | 5 cut(s) | 1775, 1931, 2053, 2663, 3215 |
| Lsp1109I | GCAGC | 8 cut(s) | 1478, 1549, 1577, 1580, 1603, 1628, 2108, 2530 |
| LweI | GCATC | 8 cut(s) | 70, 578, 739, 772, 1191, 2056, 2065, 2493 |
| MaeI | CTAG | 6 cut(s) | 443, 488, 1116, 1229, 2163, 2940 |
| MaeII | ACGT | 4 cut(s) | 383, 546, 1312, 1894 |
| MaeIII | GTNAC | 5 cut(s) | 386, 873, 2573, 3029, 3045 |
| MalI | GATC | 7 cut(s) | 576, 732, 1087, 2088, 2190, 2261, 2433 |
| MbiI | CCGCTC | 1 cut(s) | 664 |
| MboI | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| MfeI | CAATTG | 1 cut(s) | 2002 |
| MflI | RGATCY | 3 cut(s) | 1085, 2086, 2259 |
| MhlI | GDGCHC | 1 cut(s) | 1300 |
| MlyI | GAGTC | 7 cut(s) | 68, 320, 1550, 1946, 2033, 2600, 3253 |
| MmeI | TCCRAC | 2 cut(s) | 627, 2641 |
| MseI | TTAA | 9 cut(s) | 24, 354, 399, 1740, 1797, 1970, 2282, 2313, 2979 |
| MslI | CAYNNNNRTG | 6 cut(s) | 88, 758, 1023, 1535, 2030, 2790 |
| MspA1I | CMGCKG | 2 cut(s) | 1594, 3137 |
| MspI | CCGG | 1 cut(s) | 290 |
| MspR9I | CCNGG | 4 cut(s) | 290, 449, 1577, 2866 |
| MunI | CAATTG | 1 cut(s) | 2002 |
| Mva1269I | GAATGC | 1 cut(s) | 1494 |
| MvaI | CCWGG | 3 cut(s) | 449, 1577, 2866 |
| NciI | CCSGG | 1 cut(s) | 290 |
| NcoI | CCATGG | 1 cut(s) | 2484 |
| NdeI | CATATG | 1 cut(s) | 517 |
| NdeII | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| NheI | GCTAGC | 2 cut(s) | 442, 1115 |
| NlaIV | GGNNCC | 8 cut(s) | 268, 2055, 2088, 2238, 2343, 2628, 2640, 2665 |
| NmuCI | GTSAC | 3 cut(s) | 386, 873, 2573 |
| PagI | TCATGA | 1 cut(s) | 1807 |
| PaqCI | CACCTGC | 1 cut(s) | 626 |
| PctI | GAATGC | 1 cut(s) | 1494 |
| PkrI | GCNGC | 9 cut(s) | 561, 1493, 1564, 1567, 1570, 1593, 1643, 2098, 2545 |
| PleI | GAGTC | 7 cut(s) | 67, 320, 1549, 1946, 2033, 2600, 3252 |
| PpsI | GAGTC | 7 cut(s) | 67, 320, 1549, 1946, 2033, 2600, 3252 |
| PpuMI | RGGWCCY | 1 cut(s) | 2627 |
| Psp5II | RGGWCCY | 1 cut(s) | 2627 |
| Psp6I | CCWGG | 3 cut(s) | 447, 1575, 2864 |
| PspGI | CCWGG | 3 cut(s) | 447, 1575, 2864 |
| PspN4I | GGNNCC | 8 cut(s) | 268, 2055, 2088, 2238, 2343, 2628, 2640, 2665 |
| PspPI | GGNCC | 7 cut(s) | 1946, 2298, 2342, 2351, 2627, 2754, 3224 |
| PspPPI | RGGWCCY | 1 cut(s) | 2627 |
| PstI | CTGCAG | 4 cut(s) | 1354, 1379, 1567, 2098 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1491, 2597, 2865 |
| PsuI | RGATCY | 3 cut(s) | 1085, 2086, 2259 |
| PvuII | CAGCTG | 2 cut(s) | 1594, 3137 |
| RsaI | GTAC | 8 cut(s) | 99, 480, 976, 1261, 1477, 2000, 2537, 3078 |
| RsaNI | GTAC | 8 cut(s) | 98, 479, 975, 1260, 1476, 1999, 2536, 3077 |
| RseI | CAYNNNNRTG | 6 cut(s) | 88, 758, 1023, 1535, 2030, 2790 |
| SaqAI | TTAA | 9 cut(s) | 24, 354, 399, 1740, 1797, 1970, 2282, 2313, 2979 |
| SatI | GCNGC | 9 cut(s) | 560, 1492, 1563, 1566, 1569, 1592, 1642, 2097, 2544 |
| Sau3AI | GATC | 7 cut(s) | 574, 730, 1085, 2086, 2188, 2259, 2431 |
| Sau96I | GGNCC | 7 cut(s) | 1946, 2298, 2342, 2351, 2627, 2754, 3224 |
| ScaI | AGTACT | 3 cut(s) | 99, 1261, 1477 |
| SchI | GAGTC | 7 cut(s) | 68, 320, 1550, 1946, 2033, 2600, 3253 |
| ScrFI | CCNGG | 4 cut(s) | 290, 449, 1577, 2866 |
| SduI | GDGCHC | 1 cut(s) | 1300 |
| SfaNI | GCATC | 8 cut(s) | 70, 578, 739, 772, 1191, 2056, 2065, 2493 |
| SfcI | CTRYAG | 4 cut(s) | 1350, 1375, 1563, 2094 |
| SinI | GGWCC | 5 cut(s) | 2298, 2342, 2627, 2754, 3224 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 88, 758, 1023, 1535, 2030, 2790 |
| SmlI | CTYRAG | 2 cut(s) | 602, 2608 |
| SmoI | CTYRAG | 2 cut(s) | 602, 2608 |
| SsiI | CCGC | 3 cut(s) | 560, 662, 2749 |
| SspI | AATATT | 1 cut(s) | 2949 |
| SspMI | CTAG | 6 cut(s) | 443, 488, 1116, 1229, 2163, 2940 |
| StyD4I | CCNGG | 4 cut(s) | 288, 447, 1575, 2864 |
| StyI | CCWWGG | 2 cut(s) | 978, 2484 |
| TaaI | ACNGT | 7 cut(s) | 422, 1055, 1204, 1534, 1767, 2593, 2861 |
| TaiI | ACGT | 4 cut(s) | 386, 549, 1315, 1897 |
| TaqI | TCGA | 1 cut(s) | 1664 |
| TatI | WGTACW | 6 cut(s) | 97, 1259, 1475, 1998, 2535, 3076 |
| TauI | GCSGC | 1 cut(s) | 562 |
| Tru1I | TTAA | 9 cut(s) | 24, 354, 399, 1740, 1797, 1970, 2282, 2313, 2979 |
| Tru9I | TTAA | 9 cut(s) | 24, 354, 399, 1740, 1797, 1970, 2282, 2313, 2979 |
| TscAI | CASTG | 6 cut(s) | 822, 1335, 1537, 1941, 2077, 2764 |
| TseFI | GTSAC | 3 cut(s) | 386, 873, 2573 |
| TseI | GCWGC | 8 cut(s) | 1491, 1562, 1565, 1568, 1591, 1641, 2096, 2543 |
| Tsp45I | GTSAC | 3 cut(s) | 386, 873, 2573 |
| TspGWI | ACGGA | 4 cut(s) | 1050, 2290, 2699, 3070 |
| TspRI | CASTG | 6 cut(s) | 822, 1335, 1537, 1941, 2077, 2764 |
| VneI | GTGCAC | 1 cut(s) | 1296 |
| VpaK11BI | GGWCC | 5 cut(s) | 2298, 2342, 2627, 2754, 3224 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2405 |
| XapI | RAATTY | 5 cut(s) | 305, 1272, 2366, 2489, 3008 |
| XbaI | TCTAGA | 2 cut(s) | 487, 1228 |
| XspI | CTAG | 6 cut(s) | 443, 488, 1116, 1229, 2163, 2940 |
| ZrmI | AGTACT | 3 cut(s) | 99, 1261, 1477 |