Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Reverse (-)

62750326 .. 62751570

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTTGGAGGATATGAATCCGCTCAGCATTGGTTTCTATTGGGATTCATTTGATGATGGAAAGTTCTATGACTTGGTGTTCTCTGATGATCCTGTAGAGAACACAGAAGAAATGGAATTACAGGTGTTTCTTTCTGATGCCATTCCTATGCTTACTGGTCATCTTGGAGATGCTTCAACCAGATTGTCTTGCGACAATTTTCCACTGACAAAGAAAGCAGAGCATATAGATAAAAAAAGTTCTGTAGATGGATTAAACAAAGATGAAAGCAAGGAATTTCAGGAGTTGCTCTCTGATGGCATTGATATTCATGCCGGTCATATTGGAGATGCTTTAACAAAATTGTTTGGTGGCAATTTTCCACAGCCAAAAAAAGAACAGCAGAGAGAGAAAAAGGGTGCTGAGAGGGCTTCATTGCTTTTCAAGTCTATGTCACAATTCAATGATATTGACTTTTTCCTGAATCCTCGGACGGCCTCTACGGCTGGAAATAGTGATTGTGCAGTTACGGCAGTTAATAAGATTGCTCCATGTACCAAGGGTGAACAATCTCATTCTATATGTGCTCAAGTTGAGCATAGGAATGAGCAGAAGTCAAAGGAACTCTTGAACAGTTTTCCTTGTCTGGAAGAGTATAAAATGAGATCTAAAGAGGATTCGGATCAACTTCGACAATTCCTTCTATGCCATTTGCAATGGAAGCTGACTATTCAGCAGAGCATCATGTCTTTCCCTGAGACGGTCATTGTTGTAAACACTCAAAATCTAGATAAGGAAATGATAGTCTCCAGAAGAAGTACTTATCGAAAAATTCTTGCAATGGAGAAAAAAGGTGCACAAGTCGTAGAACGTGATTCAGAGCTACCAGTGGACATTATACTCAGTCCTGCAGTGTGTTTAGTGTGGTATGACTGCAGAAACATTGAAAAGAAAGCAACTTCTCTTGATGAAGCTTCTTCATGCTTACCTTTGTGCATCGCCACAAATGTTTTGACATTGCTGAGTATTACTTTCAGTACCTGCATTCTGGTAACCGCCATAACTATGGTCATAGTTTTTACTTTTATTATTAACTTTTTTTTTATCTCCCAATGGATCAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

41.55

Weight (kDa)

5.04

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1028
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	2 cut(s)	20, 1035
AclWI	GGATC	3 cut(s)	83, 669, 1103
AcsI	RAATTY	2 cut(s)	275, 810
AfaI	GTAC	3 cut(s)	535, 799, 1018
AfiI	CCNNNNNNNGG	1 cut(s)	739
AgsI	TTSAA	5 cut(s)	177, 424, 442, 610, 926
AluBI	AGCT	3 cut(s)	703, 862, 953
AluI	AGCT	3 cut(s)	703, 862, 953
Alw21I	GWGCWC	2 cut(s)	568, 838
Alw26I	GTCTC	2 cut(s)	731, 790
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	3 cut(s)	83, 669, 1103
AlwNI	CAGNNNCTG	1 cut(s)	1020
AoxI	GGCC	1 cut(s)	474
ApaLI	GTGCAC	1 cut(s)	834
ApoI	RAATTY	2 cut(s)	275, 810
AsuHPI	GGTGA	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	838
Bbv12I	GWGCWC	2 cut(s)	568, 838
BccI	CCATC	3 cut(s)	50, 242, 290
BceAI	ACGGC	3 cut(s)	489, 498, 525
BcoDI	GTCTC	2 cut(s)	731, 790
BfaI	CTAG	1 cut(s)	767
BfmI	CTRYAG	4 cut(s)	93, 243, 888, 913
BfuAI	ACCTGC	1 cut(s)	1028
BglI	GCCNNNNNGGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	644
BlpI	GCTNAGC	1 cut(s)	23
BmcAI	AGTACT	1 cut(s)	799
BmsI	GCATC	5 cut(s)	127, 160, 319, 729, 984
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpmI	CTGGAG	1 cut(s)	772
Bpu1102I	GCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	552
BsaBI	GATNNNNATC	2 cut(s)	15, 660
BsaJI	CCNNGG	2 cut(s)	467, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	160, 866
Bse3DI	GCAATG	4 cut(s)	413, 701, 825, 995
Bse8I	GATNNNNATC	2 cut(s)	15, 660
BseDI	CCNNGG	2 cut(s)	467, 537
BseJI	GATNNNNATC	2 cut(s)	15, 660
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	4 cut(s)	413, 701, 825, 995
BseMII	CTCAG	5 cut(s)	37, 393, 726, 895, 992
BseNI	ACTGG	2 cut(s)	160, 866
BseSI	GKGCMC	1 cut(s)	838
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	476
BsiHKAI	GWGCWC	2 cut(s)	568, 838
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	2 cut(s)	731, 790
BsmBI	CGTCTC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	1023
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	568, 838
Bsp143I	GATC	4 cut(s)	88, 644, 661, 1095
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	20, 1035
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	5 cut(s)	36, 394, 727, 894, 993
BspMAI	CTGCAG	2 cut(s)	892, 917
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	3 cut(s)	83, 669, 1103
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	4 cut(s)	413, 701, 825, 995
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	160, 866
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	467, 537
BssMI	GATC	4 cut(s)	88, 644, 661, 1095
BssT1I	CCWWGG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	614, 742
Bst6I	CTCTTC	1 cut(s)	624
BstDEI	CTNAG	5 cut(s)	23, 402, 735, 881, 1001
BstEII	GGTNACC	1 cut(s)	1030
BstKTI	GATC	4 cut(s)	91, 647, 664, 1098
BstMAI	GTCTC	2 cut(s)	731, 790
BstMBI	GATC	4 cut(s)	88, 644, 661, 1095
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 482, 509, 700
BstPI	GGTNACC	1 cut(s)	1030
BstSFI	CTRYAG	4 cut(s)	93, 243, 888, 913
BstSLI	GKGCMC	1 cut(s)	838
BstX2I	RGATCY	1 cut(s)	644
BstXI	CCANNNNNNTGG	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	1 cut(s)	476
BtgZI	GCGATG	1 cut(s)	961
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	3 cut(s)	203, 873, 897
BveI	ACCTGC	1 cut(s)	1028
CaiI	CAGNNNCTG	1 cut(s)	1020
Cfr10I	RCCGGY	1 cut(s)	314
Csp6I	GTAC	3 cut(s)	534, 798, 1017
CviAII	CATG	4 cut(s)	311, 531, 724, 960
CviJI	RGCY	7 cut(s)	367, 410, 476, 485, 703, 862, 953
CviKI_1	RGCY	7 cut(s)	367, 410, 476, 485, 703, 862, 953
CviQI	GTAC	3 cut(s)	534, 798, 1017
DdeI	CTNAG	5 cut(s)	23, 402, 735, 881, 1001
DpnI	GATC	4 cut(s)	90, 646, 663, 1097
DpnII	GATC	4 cut(s)	88, 644, 661, 1095
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	1 cut(s)	537
Eco91I	GGTNACC	1 cut(s)	1030
EcoO65I	GGTNACC	1 cut(s)	1030
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	731
FaeI	CATG	4 cut(s)	314, 534, 727, 963
FalI	AAGNNNNNCTT	4 cut(s)	590, 622, 784, 816
FatI	CATG	4 cut(s)	310, 530, 723, 959
FspBI	CTAG	1 cut(s)	767
GsuI	CTGGAG	1 cut(s)	772
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	4 cut(s)	314, 534, 727, 963
HindIII	AAGCTT	1 cut(s)	951
HinfI	GANTC	5 cut(s)	16, 44, 463, 656, 854
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	4 cut(s)	545, 754, 836, 871
Hpy188I	TCNGA	6 cut(s)	85, 136, 295, 471, 661, 859
Hpy188III	TCNNGA	7 cut(s)	281, 460, 607, 626, 767, 789, 944
Hpy8I	GTNNAC	4 cut(s)	545, 754, 836, 871
HpyAV	CCTTC	1 cut(s)	689
HpyCH4III	ACNGT	2 cut(s)	614, 742
HpyCH4IV	ACGT	1 cut(s)	850
HpyCH4V	TGCA	8 cut(s)	503, 694, 818, 836, 890, 915, 975, 1023
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 482, 509, 700
HpyF3I	CTNAG	5 cut(s)	23, 402, 735, 881, 1001
HpySE526I	ACGT	1 cut(s)	850
Hsp92II	CATG	4 cut(s)	314, 534, 727, 963
Kzo9I	GATC	4 cut(s)	88, 644, 661, 1095
LmnI	GCTCC	1 cut(s)	532
LweI	GCATC	5 cut(s)	127, 160, 319, 729, 984
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	3 cut(s)	432, 505, 1030
MalI	GATC	4 cut(s)	90, 646, 663, 1097
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	4 cut(s)	88, 644, 661, 1095
MboII	GAAGA	4 cut(s)	119, 641, 804, 948
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	2 cut(s)	568, 838
MluCI	AATT	8 cut(s)	116, 196, 275, 341, 355, 437, 674, 810
MnlI	CCTC	4 cut(s)	399, 477, 487, 646
MseI	TTAA	4 cut(s)	254, 335, 516, 1071
MslI	CAYNNNNRTG	3 cut(s)	146, 582, 1043
MspI	CCGG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	1023
MwoI	GCNNNNNNNGC	4 cut(s)	407, 482, 509, 700
NdeII	GATC	4 cut(s)	88, 644, 661, 1095
NlaIII	CATG	4 cut(s)	314, 534, 727, 963
NmuCI	GTSAC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	1023
PfeI	GAWTC	5 cut(s)	16, 44, 463, 656, 854
PspEI	GGTNACC	1 cut(s)	1030
PstI	CTGCAG	2 cut(s)	892, 917
PstNI	CAGNNNCTG	1 cut(s)	1020
PsuI	RGATCY	1 cut(s)	644
RsaI	GTAC	3 cut(s)	535, 799, 1018
RsaNI	GTAC	3 cut(s)	534, 798, 1017
RseI	CAYNNNNRTG	3 cut(s)	146, 582, 1043
SaqAI	TTAA	4 cut(s)	254, 335, 516, 1071
Sau3AI	GATC	4 cut(s)	88, 644, 661, 1095
ScaI	AGTACT	1 cut(s)	799
SduI	GDGCHC	2 cut(s)	568, 838
SetI	ASST	8 cut(s)	126, 705, 835, 853, 864, 955, 970, 1022
SfaNI	GCATC	5 cut(s)	127, 160, 319, 729, 984
SfcI	CTRYAG	4 cut(s)	93, 243, 888, 913
SmiMI	CAYNNNNRTG	3 cut(s)	146, 582, 1043
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	8 cut(s)	116, 196, 275, 341, 355, 437, 674, 810
SsiI	CCGC	2 cut(s)	20, 1035
SspMI	CTAG	1 cut(s)	767
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	614, 742
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	2 cut(s)	670, 805
TasI	AATT	8 cut(s)	116, 196, 275, 341, 355, 437, 674, 810
TatI	WGTACW	1 cut(s)	797
TfiI	GAWTC	5 cut(s)	16, 44, 463, 656, 854
Tru1I	TTAA	4 cut(s)	254, 335, 516, 1071
Tru9I	TTAA	4 cut(s)	254, 335, 516, 1071
TscAI	CASTG	3 cut(s)	210, 873, 897
TseFI	GTSAC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	7 cut(s)	29, 36, 279, 299, 402, 948, 963
TspRI	CASTG	3 cut(s)	210, 873, 897
VneI	GTGCAC	1 cut(s)	834
XapI	RAATTY	2 cut(s)	275, 810
XbaI	TCTAGA	1 cut(s)	766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1097
XspI	CTAG	1 cut(s)	767
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.