Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Reverse (-)

62702738 .. 62712287

Gene Structure 9550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG409500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4209 bp

ATGCGAACTCGCTTCCTCAACATCGACTACTTCACCCCCACTCCACTCCAAACCCTAGAAACCCTAACCTTCCTCCACCTCCCCATCCCTAACCTCCCTCCTCACCCCAACCTCTCCACTTCCAATGTCCTCCAAAACCTACGCCTCGATCCCGTCCTCCAAGTCTCCCTCCAAATCGAACAGTTGCCGATCACCGCCGCGCTCTCCAAGTTCTTCTCCGACGTCCTCCCTCAGAACCTCCCCGTCGACATATCGGACTTCGAGGCCGCTCCGAAACGGCGCAGTTTCGGTTCCGGCAGCAGTGCTGTTCGGGTTTCGGAGCAGGAAGCCGATGTTCTCAGAAAAGAGAAGGGACTGCAGAATCAGATAGCTGCCGGTTCAGAGTCTCCGGTGACTGAATTTCAAAAAGAGGATGGTGGTAGAAGAGATGGGGGTAGTGATGCACTCCAGTGTGAAGTACTCCAATTTGAAACACAAGAGCTGGATGTATTCTTGGAAAATGCTTACATTTATGAGAAAGATGAGGTCCCGATTCTTTCTGAAGTTCCAGAGGAAACTCTCAATCTTACAATGCAGTATCCTTGGGATATTCATGAATCGGTGCATATAGTTGAAGACTTAAAGTCAGAGTATCCCACGGATCAAAATGCTTATTCATTCGAAGATGATGGTTCTTGTCAGGACCAAATGCCCTCTTATCAGATACCTTTTCCTATGTTAGAAGCAAATGAGATACCTCTGCAAAATTTGACAGCTCTGTCTATGGAGGATGAACTTTCTTCTGTTTATGAAAATATTGAGCCACAGCATTTGGTTCAAAGTGATAACCTAAATGGCAAGGAGCTTTTGGGTTCAAAGGAATATGGGATGTTAGAGCTTCTTTCAGATAATTGTCTATCAAAGCCGTGTGTTGGATCTGACCTCGGGTCCCTCGACATTCCCCCTGAGATGGACTTGTTAAGCATGGTGGAGATGTCCCACATTCAGGGAAACATCATATATCAAGGGGCAAGCATAGGTTCCCGTTTCCAGTCTGCATGCCCAGTTGTTTTTCAGGAATTTCAGATTCTTGATTTGGACTCATCCCTAATTTTTGAAGAACTCTTTAAAGCACAAACAGCAAATGAACCAGAAACTTGTGACAGGATGTTTAATGGAGACAAGAGCTTCAACAATTTGATTGTTAGTCCTGAGCTAGCCCTGGTTGATGATACATTCAAATCATTGCCTGTACCTGTTCTAAATGATAATGAAAGGATGAGTTCATCATATGTTGTTATTGAGGAAAAGCTTACTGACGTAAAGCCACAGCCGCTATCTGCATCAGATAGGATTTACTTGGATTGGCATCTTCTTGAGAAAGATAGCACCTGCCATGATTATTCCTGTCAGAAGATGTTGGAGGATATGAATCTGCTCAGCATTGGTTCCTATTGGGATTCATTTGATGATGGAAAGTTTTATAACTTGGTTTTCTCTGATGATGCTGTAGAGAAGACAGAAGAAATGGAATTACAGGTGTTTCTTTCTGATGCCATTCCTATGCTTACTGGTCATCTTGGAGATGCTTCAACCAGATTGTCTTGTGACAATTTTCCACTGACAAAGAAAGCAGAGCATATAGATAAAAAAGGTTCTGTAGATGGATTAAACAAAGATGAAAGCAAGGAATTTCAGGAGTTGCTTTCTGATGGCATTGATATTTATACCGGTCATATTGGAGATGCTTCAACAAAATTGTGTGATGGCAATTTTCTACAGCCCAAAAATAGACAGCAGAAAGAGAAAAAGGGTGCTGAGACGGCTTCATTGCTTTTCAAGTCTATGTCACAATTCAATGATATTGACTTTTTCTTGAATCCTCGGACGGCCTCTACGGCTGGAAATAGTGATTGTGCAGTTACGGCAATTGATAAGATTGCTCCATGTACCAAGGGTGAACAATCTCATTCTATATGTGCTAAAGTTGAGCATAGGAATGAGCAGAAGTCAAAGGAACTCTTGAACAGCTTTCCATGTCAGGAAGAGTATAATATGAGATCTAAAGAGGATTCGGATGAAGTTGAAGCTAGCAGTATTCCCCCACCTATTCCTTCTATGCCATTTGCAGTGGAAGCTGACTATATTCAGCAGAGCATCATGTCTTTACCTGAGACGGTCATTGTTGTAAACACTCAAAATCTAGATAAGGAAATGATAGTCTCCAGAAGAAGTACTTATCAAAAAATTCTTGCAATGGAGAAAAAAGGTGCACAAGTCGTAGAACGTGATTCAGAGCTACCAGTGGACATTATACTCAATCCTGCAGTATGTTTAGTGTGGTATGACTGCAGAAACATTGGAAAGAAAGCAACTTCTCTTGATGAAGCTTCTTCATGCTTACCTTTGTGCATTGAGAACATCGCCACAAATGTTTTGACATTGCTGAGTACTACTTTCAGTAGCTGCATTCTGGTCTTTGAAGGAGACACCAGCTTCCAGTCCACTGTAATGGAGTCCTCAGATGGACTTTATGCTGCAGCAGCAAGCCTGGGAATTGATTTGCAGCTCTTCAACTCCTATTCATCCGAGTTGACTGATGAGATTATATTGAGCTGCATTGAACAAGCCACAAAGTCGATTAGGGGCGTATTTCCTCAAATGCCTGAATCAGAATCTCTTGCAGAATCATTCCTTACCAAGTTTCCTTCAGTTAATGCTTTGTCAGCTCATGCAATACTATCTTCTGGAGTGTCTCTCATTGAGTTTCTTAAATGGTCTCATGAAAAGAGGATCCATGCAATCCAAAAGTATCATGTTCCTGATGAAAGTATCAGACTATTTAGTGCTTTATGCAGATATGGTGAACGTGGAGATTCTAAATCAATAATGACAGACTGCTCCTCTTCAGTGTCTTCAGGGCCAGACTCAGGAAGATATAACTTAAATGTTTCTGAAAGAAAAAGACGAAAGTACAATTGTAGTCCTGACAAATATGACATACGAATGAATGACTCCTTGCATCTGGAGCCGATAAACATATCCACTGAAGCCATTTCGGATCCTCCTGCAGCTTCCAAGCTACATGATTCCTGTATGTCAAAAAGCCCTCACATAATTGATGAGTTCAGAAAGCCTAGATTCACTCACAATGATTTGTTTGATCAAGAACAGGTTTTGGATATGGCTATGATGAAGAATCCTTTTAGGGTTCCCGAGCAATATGATTCTCAGATCTCCAAAGAGCCTCAGTTATTAAGTGGGACAAAAAGGTCGGTTTTTTCTTTGAAGGATAAGATATCAGGTCAGAAACAGGGACCAAATGGGGCTATGATGAACACATTTGATTTCAGAGACCTGAAGAACTCTGAAAACCTGCATGAGGATATAAAAGGAGAAGTTATTGATCTAACAGATGGTCCTGTATTTGATGTGGACTTTTCTTCTATTGCCAACTCCATGGAATTCTCATCTTTGATGCCTGAGCTTGAAATGGATACCATGAGAAAGTACAAAGCTGCAAGAAAGTTGTCTTTTGGTTCAAGCAGTCACCGAACTTTCCCAACAGCTGCTGAAATAGACTCAAGCACAACTATTTGGGGTCCTGTAAAGGAACCGAGACAAAGTTCGCAAGTTGGAGCCAACAATTATGCAGATACGGAGATTGAAAATGATGTTTTTCCTTCAAGACAACATAACAATTTCTTAGAGGAGAGTTTCAGGCAGAGGTCCAGTGGAGTATCTCAAAGGATACATCTCCACGAGAATGATATATCAGCTTATGGAGGAACACAGCTCTCAAATGCTCTCCATTCAGGCACTCCACAACAAAACAGTCCCTGGACAATAGAGTTTCTAAACAAAATCAAGGAAAAGAGCAGGTTGCGCCAGCAGTCCTTTCCACGGGACTTATCCAGCCCAATATTGGGGTTCTCAGGCAATGCGCCGAAAGTTAATAAGAGAAGAAGTCCATCCATTCTTGAATTTTTCAAGCATGAAGGTGGTAACCCTCCGAGAAAGTTACCAGAACGGAAAAGACAAAAGCGACCAGTACAACGCTCATCCAAGATTGAAAAGAGTTCAGCATTTCCTCTTACTGGATTTACACCAGCTGATAAGAGAGCAAGACAGACACTATCTTTTGCAACGAATAAGAGTGGAAGCCAAACTAAGCTTGTGTGGAGTGATGGAGCTAATGGTCCGAGCAGAAAGTTTCAGAGTCGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1402

Amino Acids

157.02

Weight (kDa)

4.92

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1464
AarI	CACCTGC	1 cut(s)	1379
AasI	GACNNNNNNGTC	2 cut(s)	757, 3250
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	3 cut(s)	1379, 3363, 3849
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	200
AciI	CCGC	4 cut(s)	195, 198, 267, 1313
AclWI	GGATC	7 cut(s)	143, 648, 922, 2767, 2780, 3035, 3048
AcsI	RAATTY	7 cut(s)	398, 745, 1058, 1670, 2226, 3443, 3962
AcuI	CTGAAG	6 cut(s)	561, 2673, 2871, 2880, 3048, 3359
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	8 cut(s)	459, 1233, 1930, 2215, 2431, 2954, 3491, 4032
AfiI	CCNNNNNNNGG	9 cut(s)	911, 949, 985, 2909, 3361, 3882, 3904, 3905, 4076
AgeI	ACCGGT	1 cut(s)	1709
AhdI	GACNNNNNGTC	2 cut(s)	622, 925
AjnI	CCWGG	3 cut(s)	1200, 2529, 3818
AleI	CACNNNNGTG	1 cut(s)	448
Alw21I	GWGCWC	1 cut(s)	2254
Alw44I	GTGCAC	1 cut(s)	2250
AlwI	GGATC	7 cut(s)	143, 648, 922, 2767, 2780, 3035, 3048
AlwNI	CAGNNNCTG	3 cut(s)	2445, 3551, 3819
Ama87I	CYCGRG	2 cut(s)	923, 3194
AoxI	GGCC	3 cut(s)	264, 1869, 2900
ApaLI	GTGCAC	1 cut(s)	2250
ApoI	RAATTY	7 cut(s)	398, 745, 1058, 1670, 2226, 3443, 3962
AsiGI	ACCGGT	1 cut(s)	1709
AspLEI	GCGC	4 cut(s)	202, 282, 3867, 3925
AspS9I	GGNCC	9 cut(s)	526, 682, 927, 2900, 3296, 3398, 3581, 3708, 4178
AsuHPI	GGTGA	7 cut(s)	25, 95, 184, 403, 1949, 2855, 3521
AsuII	TTCGAA	1 cut(s)	660
AsuNHI	GCTAGC	2 cut(s)	1195, 2069
AvaI	CYCGRG	2 cut(s)	923, 3194
AvaII	GGWCC	8 cut(s)	526, 682, 927, 3296, 3398, 3581, 3708, 4178
BaeGI	GKGCMC	1 cut(s)	2254
BamHI	GGATCC	2 cut(s)	2772, 3040
BauI	CACGAG	1 cut(s)	3740
BbsI	GAAGAC	3 cut(s)	621, 1502, 2886
Bbv12I	GWGCWC	1 cut(s)	2254
BceAI	ACGGC	6 cut(s)	293, 889, 1818, 1884, 1893, 1920
BciT130I	CCWGG	3 cut(s)	1202, 2531, 3820
BciVI	GTATCC	4 cut(s)	588, 642, 3469, 3723
BclI	TGATCA	1 cut(s)	3142
BfaI	CTAG	5 cut(s)	56, 1196, 2070, 2183, 3117
BfmI	CTRYAG	8 cut(s)	356, 1488, 1638, 1757, 2304, 2329, 2517, 3048
BfuAI	ACCTGC	3 cut(s)	1379, 3363, 3849
BfuI	GTATCC	4 cut(s)	588, 642, 3469, 3723
BglI	GCCNNNNNGGC	1 cut(s)	1877
BglII	AGATCT	2 cut(s)	2039, 3213
BlpI	GCTNAGC	1 cut(s)	1418
BmcAI	AGTACT	3 cut(s)	459, 2215, 2431
Bme1390I	CCNGG	3 cut(s)	1202, 2531, 3820
Bme18I	GGWCC	8 cut(s)	526, 682, 927, 3296, 3398, 3581, 3708, 4178
BmeRI	GACNNNNNGTC	2 cut(s)	622, 925
BmeT110I	CYCGRG	2 cut(s)	923, 3194
BmgT120I	GGNCC	9 cut(s)	526, 682, 927, 2900, 3296, 3398, 3581, 3708, 4178
BmrFI	CCNGG	3 cut(s)	1202, 2531, 3820
BmrI	ACTGGG	1 cut(s)	1037
BmtI	GCTAGC	2 cut(s)	1199, 2073
BmuI	ACTGGG	1 cut(s)	1037
BpiI	GAAGAC	3 cut(s)	621, 1502, 2886
BplI	GAGNNNNNCTC	2 cut(s)	2721, 2753
BpmI	CTGGAG	4 cut(s)	431, 2188, 2748, 3026
Bpu10I	CCTNAGC	2 cut(s)	1191, 3462
Bpu1102I	GCTNAGC	1 cut(s)	1418
Bpu14I	TTCGAA	1 cut(s)	660
BpuEI	CTTGAG	2 cut(s)	1376, 3547
BsaBI	GATNNNNATC	2 cut(s)	1347, 1410
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	2 cut(s)	2763, 3327
BsaWI	WCCGGW	2 cut(s)	388, 1709
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	9 cut(s)	911, 949, 985, 2909, 3361, 3882, 3904, 3905, 4076
Bse118I	RCCGGY	2 cut(s)	374, 1709
Bse1I	ACTGG	9 cut(s)	448, 1030, 1043, 1555, 2282, 2479, 3711, 4028, 4081
Bse3DI	GCAATG	5 cut(s)	1223, 1808, 2241, 2420, 3925
Bse8I	GATNNNNATC	2 cut(s)	1347, 1410
BseBI	CCWGG	3 cut(s)	1202, 2531, 3820
BseJI	GATNNNNATC	2 cut(s)	1347, 1410
BseLI	CCNNNNNNNGG	9 cut(s)	911, 949, 985, 2909, 3361, 3882, 3904, 3905, 4076
BseMI	GCAATG	5 cut(s)	1223, 1808, 2241, 2420, 3925
BseNI	ACTGG	9 cut(s)	448, 1030, 1043, 1555, 2282, 2479, 3711, 4028, 4081
BseRI	GAGGAG	3 cut(s)	90, 2872, 3704
BseSI	GKGCMC	1 cut(s)	2254
BsgI	GTGCAG	1 cut(s)	1917
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	3 cut(s)	266, 1871, 2902
BshTI	ACCGGT	1 cut(s)	1709
BsiHKAI	GWGCWC	1 cut(s)	2254
BsiHKCI	CYCGRG	2 cut(s)	923, 3194
BsiSI	CCGG	4 cut(s)	294, 375, 389, 1710
BslFI	GGGAC	8 cut(s)	366, 512, 913, 961, 3256, 3309, 3801, 3899
BslI	CCNNNNNNNGG	9 cut(s)	911, 949, 985, 2909, 3361, 3882, 3904, 3905, 4076
BsmBI	CGTCTC	2 cut(s)	1793, 2147
BsmFI	GGGAC	8 cut(s)	366, 512, 913, 961, 3256, 3309, 3801, 3899
BsmI	GAATGC	1 cut(s)	2448
BsnI	GGCC	3 cut(s)	266, 1871, 2902
Bso31I	GGTCTC	2 cut(s)	2763, 3327
BsoBI	CYCGRG	2 cut(s)	923, 3194
Bsp119I	TTCGAA	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	2254
Bsp1720I	GCTNAGC	1 cut(s)	1418
Bsp19I	CCATGG	1 cut(s)	3438
BspACI	CCGC	4 cut(s)	195, 198, 267, 1313
BspANI	GGCC	3 cut(s)	266, 1871, 2902
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	2 cut(s)	592, 2761
BspMAI	CTGCAG	5 cut(s)	360, 2308, 2333, 2521, 3052
BspMI	ACCTGC	3 cut(s)	1379, 3363, 3849
BspOI	GCTAGC	2 cut(s)	1199, 2073
BspPI	GGATC	7 cut(s)	143, 648, 922, 2767, 2780, 3035, 3048
BspQI	GCTCTTC	1 cut(s)	2555
BspT104I	TTCGAA	1 cut(s)	660
BspTNI	GGTCTC	2 cut(s)	2763, 3327
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	5 cut(s)	1223, 1808, 2241, 2420, 3925
BsrFI	RCCGGY	2 cut(s)	374, 1709
BsrI	ACTGG	9 cut(s)	448, 1030, 1043, 1555, 2282, 2479, 3711, 4028, 4081
BssAI	RCCGGY	2 cut(s)	374, 1709
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	1 cut(s)	3740
BssT1I	CCWWGG	3 cut(s)	581, 1932, 3438
Bst2BI	CACGAG	1 cut(s)	3740
Bst2UI	CCWGG	3 cut(s)	1202, 2531, 3820
Bst4CI	ACNGT	4 cut(s)	183, 2158, 2488, 3815
Bst6I	CTCTTC	4 cut(s)	418, 2019, 2555, 2890
BstACI	GRCGYC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	660
BstC8I	GCNNGC	6 cut(s)	1012, 1039, 1197, 2071, 2527, 3869
BstDSI	CCRYGG	3 cut(s)	636, 3438, 3881
BstEII	GGTNACC	1 cut(s)	3983
BstENI	CCTNNNNNAGG	1 cut(s)	3359
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	4 cut(s)	202, 282, 3867, 3925
BstNI	CCWGG	3 cut(s)	1202, 2531, 3820
BstNSI	RCATGY	1 cut(s)	1041
BstPI	GGTNACC	1 cut(s)	3983
BstSCI	CCNGG	3 cut(s)	1200, 2529, 3818
BstSFI	CTRYAG	8 cut(s)	356, 1488, 1638, 1757, 2304, 2329, 2517, 3048
BstSLI	GKGCMC	1 cut(s)	2254
BstUI	CGCG	1 cut(s)	200
BstV2I	GAAGAC	3 cut(s)	621, 1502, 2886
BstX2I	RGATCY	5 cut(s)	914, 2039, 2772, 3040, 3213
BstXI	CCANNNNNNTGG	2 cut(s)	2491, 3439
BstYI	RGATCY	5 cut(s)	914, 2039, 2772, 3040, 3213
BsuI	GTATCC	4 cut(s)	588, 642, 3469, 3723
BsuRI	GGCC	3 cut(s)	266, 1871, 2902
BtgI	CCRYGG	3 cut(s)	636, 3438, 3881
BtgZI	GCGATG	1 cut(s)	2386
BtsI	GCAGTG	2 cut(s)	307, 2115
BtsIMutI	CAGTG	9 cut(s)	307, 455, 1598, 2115, 2289, 2484, 2895, 3024, 3718
BveI	ACCTGC	3 cut(s)	1379, 3363, 3849
Cac8I	GCNNGC	6 cut(s)	1012, 1039, 1197, 2071, 2527, 3869
CaiI	CAGNNNCTG	3 cut(s)	2445, 3551, 3819
CciI	TCATGA	2 cut(s)	592, 2761
CfoI	GCGC	4 cut(s)	202, 282, 3867, 3925
Cfr10I	RCCGGY	2 cut(s)	374, 1709
Cfr13I	GGNCC	9 cut(s)	526, 682, 927, 2900, 3296, 3398, 3581, 3708, 4178
Csp6I	GTAC	8 cut(s)	458, 1232, 1929, 2214, 2430, 2953, 3490, 4031
CspAI	ACCGGT	1 cut(s)	1709
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviQI	GTAC	8 cut(s)	458, 1232, 1929, 2214, 2430, 2953, 3490, 4031
DraI	TTTAAA	1 cut(s)	1108
DrdI	GACNNNNNNGTC	2 cut(s)	757, 3250
DriI	GACNNNNNGTC	2 cut(s)	622, 925
DseDI	GACNNNNNNGTC	2 cut(s)	757, 3250
Eam1104I	CTCTTC	4 cut(s)	418, 2019, 2555, 2890
Eam1105I	GACNNNNNGTC	2 cut(s)	622, 925
EarI	CTCTTC	4 cut(s)	418, 2019, 2555, 2890
Eco130I	CCWWGG	3 cut(s)	581, 1932, 3438
Eco31I	GGTCTC	2 cut(s)	2763, 3327
Eco32I	GATATC	1 cut(s)	3279
Eco47I	GGWCC	8 cut(s)	526, 682, 927, 3296, 3398, 3581, 3708, 4178
Eco57I	CTGAAG	6 cut(s)	561, 2673, 2871, 2880, 3048, 3359
Eco88I	CYCGRG	2 cut(s)	923, 3194
Eco91I	GGTNACC	1 cut(s)	3983
EcoNI	CCTNNNNNAGG	1 cut(s)	3359
EcoO109I	RGGNCCY	3 cut(s)	526, 927, 3581
EcoO65I	GGTNACC	1 cut(s)	3983
EcoRI	GAATTC	1 cut(s)	3443
EcoRII	CCWGG	3 cut(s)	1200, 2529, 3818
EcoRV	GATATC	1 cut(s)	3279
EcoT14I	CCWWGG	3 cut(s)	581, 1932, 3438
ErhI	CCWWGG	3 cut(s)	581, 1932, 3438
Esp3I	CGTCTC	2 cut(s)	1793, 2147
FalI	AAGNNNNNCTT	4 cut(s)	1985, 2017, 2200, 2232
FaqI	GGGAC	8 cut(s)	366, 512, 913, 961, 3256, 3309, 3801, 3899
FauNDI	CATATG	1 cut(s)	1270
FbaI	TGATCA	1 cut(s)	3142
FblI	GTMKAC	1 cut(s)	246
FspBI	CTAG	5 cut(s)	56, 1196, 2070, 2183, 3117
GlaI	GCGC	4 cut(s)	201, 281, 3866, 3924
GsuI	CTGGAG	4 cut(s)	431, 2188, 2748, 3026
HaeIII	GGCC	3 cut(s)	266, 1871, 2902
HapII	CCGG	4 cut(s)	294, 375, 389, 1710
HhaI	GCGC	4 cut(s)	202, 282, 3867, 3925
Hin1I	GRCGYC	1 cut(s)	222
Hin6I	GCGC	4 cut(s)	200, 280, 3865, 3923
HinP1I	GCGC	4 cut(s)	200, 280, 3865, 3923
HincII	GTYRAC	2 cut(s)	247, 2574
HindII	GTYRAC	2 cut(s)	247, 2574
HindIII	AAGCTT	3 cut(s)	1289, 2367, 4151
HpaII	CCGG	4 cut(s)	294, 375, 389, 1710
HphI	GGTGA	7 cut(s)	25, 95, 184, 403, 1949, 2855, 3521
Hpy166II	GTNNAC	9 cut(s)	247, 1940, 2170, 2252, 2287, 2484, 2574, 2846, 3415
Hpy8I	GTNNAC	9 cut(s)	247, 1940, 2170, 2252, 2287, 2484, 2574, 2846, 3415
Hpy99I	CGWCG	2 cut(s)	224, 248
HpyAV	CCTTC	8 cut(s)	79, 343, 2103, 2456, 2697, 3262, 3672, 3971
HpyCH4III	ACNGT	4 cut(s)	183, 2158, 2488, 3815
HpyCH4IV	ACGT	4 cut(s)	222, 1299, 2266, 2848
HpySE526I	ACGT	4 cut(s)	222, 1299, 2266, 2848
Hsp92I	GRCGYC	1 cut(s)	222
HspAI	GCGC	4 cut(s)	200, 280, 3865, 3923
KflI	GGGWCCC	1 cut(s)	927
Ksp22I	TGATCA	1 cut(s)	3142
LguI	GCTCTTC	1 cut(s)	2555
LmnI	GCTCC	8 cut(s)	274, 319, 841, 1927, 2885, 3007, 3617, 4169
MaeI	CTAG	5 cut(s)	56, 1196, 2070, 2183, 3117
MaeII	ACGT	4 cut(s)	222, 1299, 2266, 2848
MaeIII	GTNAC	8 cut(s)	391, 1139, 1586, 1827, 1900, 3527, 3983, 3999
MbiI	CCGCTC	1 cut(s)	269
MfeI	CAATTG	2 cut(s)	1908, 2956
MflI	RGATCY	5 cut(s)	914, 2039, 2772, 3040, 3213
MhlI	GDGCHC	1 cut(s)	2254
MlyI	GAGTC	7 cut(s)	392, 1073, 2504, 2900, 2987, 3554, 4207
MmeI	TCCRAC	4 cut(s)	243, 892, 1380, 3595
MslI	CAYNNNNRTG	7 cut(s)	448, 1541, 1977, 2489, 2984, 3744, 3978
MspA1I	CMGCKG	2 cut(s)	3548, 4091
MspI	CCGG	4 cut(s)	294, 375, 389, 1710
MspR9I	CCNGG	3 cut(s)	1202, 2531, 3820
MunI	CAATTG	2 cut(s)	1908, 2956
Mva1269I	GAATGC	1 cut(s)	2448
MvaI	CCWGG	3 cut(s)	1202, 2531, 3820
MvnI	CGCG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	3438
NdeI	CATATG	1 cut(s)	1270
NheI	GCTAGC	2 cut(s)	1195, 2069
NmuCI	GTSAC	5 cut(s)	391, 1139, 1586, 1827, 3527
NspI	RCATGY	1 cut(s)	1041
NspV	TTCGAA	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	448
PaeI	GCATGC	1 cut(s)	1041
PagI	TCATGA	2 cut(s)	592, 2761
PaqCI	CACCTGC	1 cut(s)	1379
PciSI	GCTCTTC	1 cut(s)	2555
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PctI	GAATGC	1 cut(s)	2448
PinAI	ACCGGT	1 cut(s)	1709
PleI	GAGTC	7 cut(s)	391, 1073, 2503, 2900, 2987, 3554, 4206
PpsI	GAGTC	7 cut(s)	391, 1073, 2503, 2900, 2987, 3554, 4206
PpuMI	RGGWCCY	3 cut(s)	526, 927, 3581
PsiI	TTATAA	1 cut(s)	1464
Psp5II	RGGWCCY	3 cut(s)	526, 927, 3581
Psp6I	CCWGG	3 cut(s)	1200, 2529, 3818
PspEI	GGTNACC	1 cut(s)	3983
PspGI	CCWGG	3 cut(s)	1200, 2529, 3818
PspPI	GGNCC	9 cut(s)	526, 682, 927, 2900, 3296, 3398, 3581, 3708, 4178
PspPPI	RGGWCCY	3 cut(s)	526, 927, 3581
PstI	CTGCAG	5 cut(s)	360, 2308, 2333, 2521, 3052
PstNI	CAGNNNCTG	3 cut(s)	2445, 3551, 3819
PsuI	RGATCY	5 cut(s)	914, 2039, 2772, 3040, 3213
PvuII	CAGCTG	2 cut(s)	3548, 4091
RsaI	GTAC	8 cut(s)	459, 1233, 1930, 2215, 2431, 2954, 3491, 4032
RsaNI	GTAC	8 cut(s)	458, 1232, 1929, 2214, 2430, 2953, 3490, 4031
RseI	CAYNNNNRTG	7 cut(s)	448, 1541, 1977, 2489, 2984, 3744, 3978
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	2555
Sau96I	GGNCC	9 cut(s)	526, 682, 927, 2900, 3296, 3398, 3581, 3708, 4178
ScaI	AGTACT	3 cut(s)	459, 2215, 2431
SchI	GAGTC	7 cut(s)	392, 1073, 2504, 2900, 2987, 3554, 4207
ScrFI	CCNGG	3 cut(s)	1202, 2531, 3820
SduI	GDGCHC	1 cut(s)	2254
SfcI	CTRYAG	8 cut(s)	356, 1488, 1638, 1757, 2304, 2329, 2517, 3048
SfuI	TTCGAA	1 cut(s)	660
SinI	GGWCC	8 cut(s)	526, 682, 927, 3296, 3398, 3581, 3708, 4178
SmiMI	CAYNNNNRTG	7 cut(s)	448, 1541, 1977, 2489, 2984, 3744, 3978
SmlI	CTYRAG	2 cut(s)	1355, 3562
SmoI	CTYRAG	2 cut(s)	1355, 3562
SphI	GCATGC	1 cut(s)	1041
SsiI	CCGC	4 cut(s)	195, 198, 267, 1313
SspI	AATATT	2 cut(s)	796, 3903
SspMI	CTAG	5 cut(s)	56, 1196, 2070, 2183, 3117
StyD4I	CCNGG	3 cut(s)	1200, 2529, 3818
StyI	CCWWGG	3 cut(s)	581, 1932, 3438
TaaI	ACNGT	4 cut(s)	183, 2158, 2488, 3815
TaiI	ACGT	4 cut(s)	225, 1302, 2269, 2851
TaqI	TCGA	8 cut(s)	24, 147, 177, 246, 261, 660, 933, 2618
TatI	WGTACW	6 cut(s)	457, 2213, 2429, 2952, 3489, 4030
TauI	GCSGC	3 cut(s)	200, 269, 1315
TscAI	CASTG	9 cut(s)	307, 455, 1605, 2115, 2289, 2491, 2895, 3031, 3718
TseFI	GTSAC	5 cut(s)	391, 1139, 1586, 1827, 3527
Tsp45I	GTSAC	5 cut(s)	391, 1139, 1586, 1827, 3527
TspGWI	ACGGA	3 cut(s)	653, 3653, 4024
TspRI	CASTG	9 cut(s)	307, 455, 1605, 2115, 2289, 2491, 2895, 3031, 3718
VneI	GTGCAC	1 cut(s)	2250
VpaK11BI	GGWCC	8 cut(s)	526, 682, 927, 3296, 3398, 3581, 3708, 4178
XagI	CCTNNNNNAGG	1 cut(s)	3359
XapI	RAATTY	7 cut(s)	398, 745, 1058, 1670, 2226, 3443, 3962
XbaI	TCTAGA	1 cut(s)	2182
XceI	RCATGY	1 cut(s)	1041
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3901
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	5 cut(s)	56, 1196, 2070, 2183, 3117
ZraI	GACGTC	1 cut(s)	223
ZrmI	AGTACT	3 cut(s)	459, 2215, 2431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.