Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022060.1

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Forward (+)

5392 .. 6571

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022060.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1180 bp

atgcagtatcctttggatattcatgaatcggtgcatatagttgaagacttaaagtcagagtatcccatggatcaaaatgcttattcattcgaagatgatggttcttgtcaggaccaaatgccctcttatcagatacattttcctatgttagaagcaaatgagatacctctgcaaaatttgacagctctgtctatggaggatgaactttcttctgtttatgaaaatattgagccacaacatttggctcaaagtgataacctaaatggcaaggagcttttgggttcaaaggaatatgggatgttagagcttctttcagataattgtctatcaaagccgtgtgctggatctggcctcgggtccctcgacattccccctgagatggacttgttaagcatggtggagatgtcccagattcagggaaacatcatatatcaaggggcaagcataggttcccgtttccagtctgcatgcccagttgtttttcaggaatttcagattcttgatttggactcatccctactttttgaagacctctttaaagcacaaacagcgaatgaaccagaaacttgtgactggatgtttaatggagacaagaacttcaacaatttgattgttagtcctgagctagccctggttgatgatacattcaaatcattgcctgtacctgttttaaatgataatgaaaggatgagttcatcatatgttattattgaggaaaagcttaccgacgtaaagccacagccgctatctgcatcagataggatttacttggattggcatcttcttgagaaagatagcacctgccatgattattcctgtcaaaagaagatgttggaggatatgaatccgctcagcattggttcctattgggattcatttgatgatggaaagttctatgacttggttttctctgacgatgctgtagagaacacagaagaaatggaattacaggtttttctttctgatgccattcctatgcttgctggtcatcttggagatgcttcaaccagattgtcttgtgacaattttccactgacaaagaaagcagagcatatagataaaaaaagtgctgtagatggattaaacaaagatgaaagcaaggagttgctttctgatggcattgatattcatactggtcatattggagatgcttcaacaaaattgtctgatggcaattttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

44.0

Weight (kDa)

4.16

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	809
AasI	GACNNNNNNGTC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	809
AccBSI	CCGCTC	1 cut(s)	850
AciI	CCGC	2 cut(s)	743, 848
AclWI	GGATC	2 cut(s)	78, 352
AcsI	RAATTY	2 cut(s)	175, 488
AfaI	GTAC	1 cut(s)	663
AfiI	CCNNNNNNNGG	3 cut(s)	341, 379, 415
AgsI	TTSAA	7 cut(s)	44, 285, 527, 601, 649, 1005, 1155
AhdI	GACNNNNNGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	5 cut(s)	185, 274, 307, 625, 721
AluI	AGCT	5 cut(s)	185, 274, 307, 625, 721
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	2 cut(s)	78, 352
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	349
ApoI	RAATTY	2 cut(s)	175, 488
AspS9I	GGNCC	2 cut(s)	112, 357
AsuII	TTCGAA	1 cut(s)	90
AsuNHI	GCTAGC	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	112, 357
BbsI	GAAGAC	2 cut(s)	51, 534
BccI	CCATC	6 cut(s)	92, 373, 878, 1070, 1109, 1163
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	632
BciVI	GTATCC	2 cut(s)	18, 72
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	2 cut(s)	921, 1071
BfuAI	ACCTGC	1 cut(s)	809
BfuI	GTATCC	2 cut(s)	18, 72
BisI	GCNGC	1 cut(s)	743
BlpI	GCTNAGC	1 cut(s)	851
BlsI	GCNGC	1 cut(s)	744
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	2 cut(s)	112, 357
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	112, 357
BmiI	GGNNCC	4 cut(s)	358, 359, 451, 862
BmrFI	CCNGG	1 cut(s)	632
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	6 cut(s)	761, 787, 907, 955, 988, 1138
BmtI	GCTAGC	1 cut(s)	629
BmuI	ACTGGG	1 cut(s)	467
BpiI	GAAGAC	2 cut(s)	51, 534
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	851
Bpu14I	TTCGAA	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	806
BsaBI	GATNNNNATC	2 cut(s)	777, 843
BsaJI	CCNNGG	3 cut(s)	66, 352, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 379, 415
Bse1I	ACTGG	4 cut(s)	460, 473, 578, 1138
Bse3DI	GCAATG	1 cut(s)	653
Bse8I	GATNNNNATC	2 cut(s)	777, 843
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	3 cut(s)	66, 352, 630
BseGI	GGATG	5 cut(s)	205, 303, 512, 582, 693
BseJI	GATNNNNATC	2 cut(s)	777, 843
BseLI	CCNNNNNNNGG	3 cut(s)	341, 379, 415
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	3 cut(s)	366, 612, 865
BseNI	ACTGG	4 cut(s)	460, 473, 578, 1138
BshFI	GGCC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	343, 391
BslI	CCNNNNNNNGG	3 cut(s)	341, 379, 415
BsmAI	GTCTC	1 cut(s)	582
BsmFI	GGGAC	2 cut(s)	343, 391
BsnI	GGCC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	70, 344
Bsp1720I	GCTNAGC	1 cut(s)	851
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	2 cut(s)	743, 848
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	3 cut(s)	367, 613, 864
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	4 cut(s)	358, 359, 451, 862
BspMI	ACCTGC	1 cut(s)	809
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	78, 352
BspT104I	TTCGAA	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	850
BsrDI	GCAATG	1 cut(s)	653
BsrI	ACTGG	4 cut(s)	460, 473, 578, 1138
BssECI	CCNNGG	3 cut(s)	66, 352, 630
BssMI	GATC	2 cut(s)	70, 344
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	4 cut(s)	442, 469, 627, 981
BstDEI	CTNAG	3 cut(s)	375, 621, 851
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	5 cut(s)	205, 303, 512, 582, 693
BstKTI	GATC	2 cut(s)	73, 347
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	2 cut(s)	70, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 742
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	630
BstSFI	CTRYAG	2 cut(s)	921, 1071
BstV2I	GAAGAC	2 cut(s)	51, 534
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuI	GTATCC	2 cut(s)	18, 72
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	5 cut(s)	205, 303, 512, 582, 693
BtsIMutI	CAGTG	1 cut(s)	1031
BveI	ACCTGC	1 cut(s)	809
Cac8I	GCNNGC	4 cut(s)	442, 469, 627, 981
CciI	TCATGA	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	112, 357
Csp6I	GTAC	1 cut(s)	662
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	5 cut(s)	23, 67, 394, 468, 806
CviQI	GTAC	1 cut(s)	662
DdeI	CTNAG	3 cut(s)	375, 621, 851
DpnI	GATC	2 cut(s)	72, 346
DpnII	GATC	2 cut(s)	70, 344
DraI	TTTAAA	2 cut(s)	538, 672
DrdI	GACNNNNNNGTC	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	112, 357
Eco88I	CYCGRG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	5 cut(s)	26, 70, 397, 471, 809
FaqI	GGGAC	2 cut(s)	343, 391
FatI	CATG	5 cut(s)	22, 66, 393, 467, 805
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	1 cut(s)	743
FokI	GGATG	5 cut(s)	212, 310, 499, 589, 700
Fsp4HI	GCNGC	1 cut(s)	743
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	26, 70, 397, 471, 809
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	6 cut(s)	26, 412, 496, 509, 844, 872
Hpy188I	TCNGA	9 cut(s)	58, 132, 316, 495, 757, 913, 964, 1114, 1168
Hpy188III	TCNNGA	6 cut(s)	23, 110, 485, 500, 620, 785
Hpy99I	CGWCG	1 cut(s)	731
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	5 cut(s)	4, 34, 172, 467, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 742
HpyF3I	CTNAG	3 cut(s)	375, 621, 851
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	5 cut(s)	26, 70, 397, 471, 809
KflI	GGGWCCC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	70, 344
LmnI	GCTCC	1 cut(s)	271
LweI	GCATC	6 cut(s)	761, 787, 907, 955, 988, 1138
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	2 cut(s)	569, 1019
MalI	GATC	2 cut(s)	72, 346
MbiI	CCGCTC	1 cut(s)	850
MboI	GATC	2 cut(s)	70, 344
MboII	GAAGA	7 cut(s)	56, 104, 201, 539, 773, 838, 947
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	8 cut(s)	175, 319, 488, 604, 944, 1024, 1160, 1174
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	813
MnlI	CCTC	8 cut(s)	133, 177, 190, 362, 371, 542, 706, 829
MseI	TTAA	6 cut(s)	50, 389, 537, 582, 671, 1082
MslI	CAYNNNNRTG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	2 cut(s)	548, 742
NcoI	CCATGG	1 cut(s)	66
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	2 cut(s)	70, 344
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	5 cut(s)	26, 70, 397, 471, 809
NlaIV	GGNNCC	4 cut(s)	358, 359, 451, 862
NmuCI	GTSAC	2 cut(s)	569, 1019
NspI	RCATGY	1 cut(s)	471
NspV	TTCGAA	1 cut(s)	90
PaeI	GCATGC	1 cut(s)	471
PagI	TCATGA	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	809
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PfeI	GAWTC	5 cut(s)	26, 412, 496, 844, 872
PkrI	GCNGC	1 cut(s)	744
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PpuMI	RGGWCCY	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	4 cut(s)	358, 359, 451, 862
PspPI	GGNCC	2 cut(s)	112, 357
PspPPI	RGGWCCY	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	663
RsaNI	GTAC	1 cut(s)	662
RseI	CAYNNNNRTG	1 cut(s)	974
SaqAI	TTAA	6 cut(s)	50, 389, 537, 582, 671, 1082
SatI	GCNGC	1 cut(s)	743
Sau3AI	GATC	2 cut(s)	70, 344
Sau96I	GGNCC	2 cut(s)	112, 357
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	632
SfaNI	GCATC	6 cut(s)	761, 787, 907, 955, 988, 1138
SfcI	CTRYAG	2 cut(s)	921, 1071
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	2 cut(s)	112, 357
SmiMI	CAYNNNNRTG	1 cut(s)	974
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	8 cut(s)	175, 319, 488, 604, 944, 1024, 1160, 1174
SsiI	CCGC	2 cut(s)	743, 848
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	90, 363
TasI	AATT	8 cut(s)	175, 319, 488, 604, 944, 1024, 1160, 1174
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	5 cut(s)	26, 412, 496, 844, 872
Tru1I	TTAA	6 cut(s)	50, 389, 537, 582, 671, 1082
Tru9I	TTAA	6 cut(s)	50, 389, 537, 582, 671, 1082
TscAI	CASTG	1 cut(s)	1038
TseFI	GTSAC	2 cut(s)	569, 1019
Tsp45I	GTSAC	2 cut(s)	569, 1019
TspRI	CASTG	1 cut(s)	1038
VpaK11BI	GGWCC	2 cut(s)	112, 357
XapI	RAATTY	2 cut(s)	175, 488
XceI	RCATGY	1 cut(s)	471
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.