Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Forward (+)

3601520 .. 3604648

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAGATTAAGAAAGTGAATTACAAGTGGTCGGAGTTGTACCAGACCAAGTCCAAGAGAGTGGAAAAGGCCGAGAAAGAAGTCGGTGAAAGATTGAAGAAGCTGTATGAGAAAGAAGTCGCCCGGAAACAAAGCCGGCGAGTTAAGGTTTTGGACAAGGTTCCACCTTCTTTGCCAAGCAATAAAAGAATTGGCTCTAACAAAGGGAGCAAACTGCTGAACAGATTGCCGATCACCGCCGCGCTCTCCAAGTTCTTCTCCGAAGTCCTCGTCGTCGACCTCGCGGAGTTTGAGGCCCCGAAACGGCGCAGTTTCGGTTCCGGAAGCAGTGCGGTTAGGGTTTCGGAGGAGAAAATCGATGTTCTCAAAAAGATCGAGAAGGGACCGGAGAATCAGATAACTGCAGGTTCAAAGTCTCCAGAGATTGAATCTCAGAAAGAGGATAGTGGCAGAAGAGATGGGGATAATGATGCACTCCAATGTGAAGTATTTCCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elongin_A

Protein Analysis

167

Amino Acids

18.76

Weight (kDa)

9.75

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	2 cut(s)	242, 284
AccIII	TCCGGA	1 cut(s)	320
AciI	CCGC	4 cut(s)	237, 240, 284, 332
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	97, 411, 428
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	420
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	2 cut(s)	69, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	2 cut(s)	244, 309
AspS9I	GGNCC	2 cut(s)	295, 383
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	98, 226
AvaII	GGWCC	1 cut(s)	383
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	295, 383
BmiI	GGNNCC	4 cut(s)	162, 297, 319, 384
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	460
BpmI	CTGGAG	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	357
BsaWI	WCCGGW	2 cut(s)	320, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse118I	RCCGGY	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	362
Bsh1236I	CGCG	2 cut(s)	242, 284
BshFI	GGCC	2 cut(s)	71, 296
BshVI	ATCGAT	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	124, 136, 321, 386
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	71, 296
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	231, 372
BspACI	CCGC	4 cut(s)	237, 240, 284, 332
BspANI	GGCC	2 cut(s)	71, 296
BspCNI	CTCAG	1 cut(s)	445
BspDI	ATCGAT	1 cut(s)	357
BspEI	TCCGGA	1 cut(s)	320
BspFNI	CGCG	2 cut(s)	242, 284
BspLI	GGNNCC	4 cut(s)	162, 297, 319, 384
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	135
BssMI	GATC	2 cut(s)	231, 372
Bst6I	CTCTTC	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	1 cut(s)	432
BstFNI	CGCG	2 cut(s)	242, 284
BstHHI	GCGC	2 cut(s)	244, 309
BstKTI	GATC	2 cut(s)	234, 375
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	2 cut(s)	231, 372
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	2 cut(s)	242, 284
BstXI	CCANNNNNNTGG	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	71, 296
BsuTUI	ATCGAT	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	2 cut(s)	244, 309
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	295, 383
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	40
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviJI	RGCY	5 cut(s)	71, 103, 135, 195, 296
CviKI_1	RGCY	5 cut(s)	71, 103, 135, 195, 296
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	233, 374
DpnII	GATC	2 cut(s)	231, 372
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	295
FaiI	YATR	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	2 cut(s)	243, 308
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	71, 296
HapII	CCGG	4 cut(s)	124, 136, 321, 386
HhaI	GCGC	2 cut(s)	244, 309
Hin6I	GCGC	2 cut(s)	242, 307
HinP1I	GCGC	2 cut(s)	242, 307
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	2 cut(s)	391, 428
HpaII	CCGG	4 cut(s)	124, 136, 321, 386
HphI	GGTGA	2 cut(s)	98, 226
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	5 cut(s)	34, 262, 346, 396, 435
Hpy188III	TCNNGA	3 cut(s)	321, 376, 419
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	2 cut(s)	275, 278
HpyAV	CCTTC	2 cut(s)	177, 373
HpyCH4V	TGCA	2 cut(s)	404, 473
HpyF3I	CTNAG	1 cut(s)	432
HspAI	GCGC	2 cut(s)	242, 307
Kpn2I	TCCGGA	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	231, 372
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	56, 137, 149, 334, 390, 399, 432
LweI	GCATC	1 cut(s)	460
MalI	GATC	2 cut(s)	233, 374
MboI	GATC	2 cut(s)	231, 372
MboII	GAAGA	4 cut(s)	16, 109, 247, 465
MluCI	AATT	3 cut(s)	19, 189, 495
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	5 cut(s)	278, 286, 290, 340, 433
MroI	TCCGGA	1 cut(s)	320
MroNI	GCCGGC	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	2 cut(s)	9, 144
MslI	CAYNNNNRTG	1 cut(s)	478
MspI	CCGG	4 cut(s)	124, 136, 321, 386
MspR9I	CCNGG	1 cut(s)	124
MvnI	CGCG	2 cut(s)	242, 284
NaeI	GCCGGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	2 cut(s)	231, 372
NgoMIV	GCCGGC	1 cut(s)	135
NlaIV	GGNNCC	4 cut(s)	162, 297, 319, 384
NmeAIII	GCCGAG	1 cut(s)	97
PdiI	GCCGGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	391, 428
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	241
PspN4I	GGNNCC	4 cut(s)	162, 297, 319, 384
PspPI	GGNCC	2 cut(s)	295, 383
PstI	CTGCAG	1 cut(s)	406
PsyI	GACNNNGTC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	478
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	9, 144
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	231, 372
Sau96I	GGNCC	2 cut(s)	295, 383
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	6 cut(s)	105, 150, 162, 169, 282, 409
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	478
Sse9I	AATT	3 cut(s)	19, 189, 495
SsiI	CCGC	4 cut(s)	237, 240, 284, 332
StyD4I	CCNGG	1 cut(s)	122
TaqI	TCGA	3 cut(s)	276, 357, 375
TasI	AATT	3 cut(s)	19, 189, 495
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	391, 428
Tru1I	TTAA	2 cut(s)	9, 144
Tru9I	TTAA	2 cut(s)	9, 144
TscAI	CASTG	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.