Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Reverse (-)

33610374 .. 33618288

Gene Structure 7915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1268700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4167 bp

ATGCGAACTCGCTACCTCAACATCGACTACTTCACCGCCACTCCAACCCAAACCCCGGACTCCACAACCTTCCTCCACCTTCCGATCCCTCACCTCCCTCCCTCCAATCTCTCCACCCCCTTCGACGGCCTCCAACTCTCCCGCTTCGACTCCGAACTCGAAGTCTCGCTCCAAATAGAGCAATTGCCAATCGGAGACGCTCTCTCCAAGTTCTTCTCCGATGTTCTTCCTCAGAAGATAGTTATCGATGTTGCGGACCTCGAGGCCGGCGATTCGTCTCCGAGTTCTAGAAGTTTCGGTTCCGGAAGCCGTGAGTTGCAGTTTTCGGAGAAAGCCGAGGATCTCAAAGAAGAGAAGAGATCGGAGGATCAGATATCTTTTGGTTCCAAGACTCATGAGGCTGACTTTCGAAAAAAGGATAATGGCAGAAGAGATGCAGAGAAAGATGCACACCCATATGAAATGCTCCACTTTGAAACACCAGAGTTGGATGTATTCTTGGAAAATGCTTACATTTATGAGAAAGAGGGGCTCCCGTTTCTTTCAGAAGTTCCAGAGGCTGAGAATAATTTAGAAATGCTTAATCGTACACTGGAGTTTCCTTGGGAAGTTCATGAGTCAGTTCATACAGTTGAAGACGTTCATTCGGAGTATTCCATGGATCAAAAGGCTTATATGTTTGAAGATGATTGTTCTTACAAGGACCAAATGCACTTCTATCAGAATTTCCCTCTATTAGAAGTAAATGAGATTACTCTGCCAACTTTGACAGGTTTGTCTGTAGAGGATGAACTTTCTTCTGTTTACGAAAATATTGAGCCCCAGCATTGGGATAAAAAAGATAACCTGAATGGCAAGGAGCTTTTGGGTACAAAGGAATATGGGACCTTGGAGTGTCTTTTAGATCTTCGATCTGATCTCGGGTCCCTTGACATTACCCCTGAAATGGATTTATTAAGCATGGTGGAAATGCCACAGATGCAGGGAAACATCACATATCAAGGGACGTCCATGGATGCTTGTTTCCAGTCTCGAAGCCTGGTTGTTTTTGAAGAATTTCAGATTCTTGATTTGAACTCGTCTCAGCATTTTGAAGTCCTCATTAGTACCCTAACAGCAAATGAACCAGAAACCTGTGACTGGATGTTTCATGGAGACATAAACTTCAATACTTTGATTGTTAGTCATGAGCTAGCCCTTGTCGATGGCACATTCAAATCATTGCCTGTGCCTGTTCTCTCTGATCATGAAAAGATATGTTCTTCATATGTTGTTATGGAGGAAACACTAACTAACTTACAGCCGCTACCCCTATCTGCATCAGATAGGATTTACTTGGATTGGCATTTTCTCGAGAAAGATAAATGCAACTGTCAAATTTCTTTCTCCCATCAGAAAATCTTGGAGGATACAAATTCACTGAGCACGTGTTTTGATTGGGACTCCTATGATGATGGAAAGCTGGTGTATGATTTTGCTTTCTCCGATGACGCTGTAGATGAGTTTAATACAGAAGAAAACAAAGAATTACAGGAGTTGCCCTCTGATGGCATTCCTATGCTTGCTGGTCATCTTGGAGATACTTCAGGCAAATTGTCAGGCGGCGCTTTTCCACAGAAAAAAATTGGAGAGCATATTGATAAAAGAGGCGCTGAGAGGGCTTCATCACTTTTCAAGTCTATGTCACAATTCAATGATATCAGCTTTTTCTTGAATCCGCAGAAGGCCTCTACAGGTGGAAATAGTAATTGTGCAGTTACCACAGTAGCTAATGCTACATCTCCAAAGGGAGAGCAGTCCTATTCTATATCTGCTCCAGTTGAGAATATGAATGATCAGCAGTCAGAGGAACTCTCGGACATTTTTCCTGGTCAGGAAAAGAATGATCAGCAGTCAGAGGAACTCTCGGACATTTTTCCTGGTCAGGAAAAGAATGATATGAGATATAAAGAAGGTGCAGATGAAGTAGAAGCTAGCAGTATGCCCCTTCCTAATCTTTCTGTGCCACCTGCAGTGGAAGCTGAGCGTTTTCAGCAGAGCATGGCCTCTTTCCCTGAGATGGTCATTGTTGTAAACACTCAAAATCTTGATAAGGAAATGATAGTATCTAGAAGAAGTACCTACCAAAAAATTCTTGCAATGGAGAAAGAAGGGGTACAAGTAGTAGAACGTGATTCAGATTTACCTGTGGATATCATAATCAGTTCTGCAATTTGTTTAGTGTGGTATGACTGCAAAAACATTGGAAAGAAAGCAACCACTATTGATGAAGCTTCTTCATGCTTACCTTTGTGCATTGAGAATATTGCCACAAATGTTTTGACGTTGCTGAGTTTCACTTTCAGTGGCTGCATTATGATCTTTGAGGGAGAAAACAGCTTCCTCTCCACTGTAATGGAGTACTCAGATGGACTTTATGCAGCAGCAGCGGGCCTGGGAATTGATTTGCAGCTTTTCAACTCATATTCATCTGAGTTGACTGATGAAATTATATTGAGCTGCATGGGACATGCCACAAAGTCGAAAAGGTTTATGTATCCTCGAATGCCTGAGTCGGAAAGTCTTGCAGAATCATTCCTTACCAGATTTCCTTCAGTAAATGCTTTGACAGCTCATGCAATATTGTCTTCAGGAGGCTTGCTCAAAGAGTTTCTTGAATCGTCCCATGAAACCAGGATGAGTGTAATCCAAAAATATCATGTTCCTGATGAAAGTATCACACTATTTAGTACTTTATGCAAATATGGTGAACCGGCAGATTCTAAATCAATTATGACAGACTGCTCCTCTTCAGTGTCTTCAGGTCCAGACTCGGGAAGATATAATCAGAATCCTGTTTTGGAAAGAAAGAAACGAAAATACAATGGTAGTCCTGACAAATATGAGTTACAAACGAATGAATTCTTGCACCTGGAGCCGTTGAACCAATTCAGTACCAACATCTTGAATCCTTCTACAGCTTCCAAGTTAGATGATTCATGTATGTCAAAAAGCCCCAAAATAATTGATGAGTTCAGAAAGTCTAGGTTCTCTCAGAATGACTTGTTTGATCAAGAAGTGGGCTTAGATACGGATATGATGATGAATCCTTTTAAGGTTTTCGAGCCATATGATTCTCAAATCTCCAAAGGGCCTCAGGTATTAAATGATATAAAAAGGTCCTGTTCATCGTTGAAGGATAAGCTGTCAGGTCAGAAACGAGGATCAGATACGCCTATCATGAAGAATTTTGATTTCTATAACAAGAATTCTGAGGTTCTGCATGAGGACCTTAAAGGGGAAGTTATTGACCTAAAAGGCAGTCCTGTATTAGATGAGGACTTTTCTTTTATTGGCAACCCTATGAAATTCTCATCTCAGATGCCTGAGTTGGAAATGGATTCCACAAGGAAGTCTAAAGCTGCAAGAAAATTGTCATTTGGTTTAAGTAGTCACCGTACTTTCCCAACAGCTGCTGAAATCAACTCAACTCCAACTGTTTGGCGTTCTGCAGAAAACCTGAGAAAAATTTCGCAAGTTGGAGCCAACGATTACTCAGATACAGATCTCGAACATGATGTTTTCCCCTTAACAAACCGTAACAAGCCCTTAGAGGAGACTTTCATGAAGAGGGCCGGGGGGAAATCCCAAGGGCTACATTTCCATGAAAATGATATATCACCTTATGGAGGAATGCAAGGGCTACATCTCTACGGGAATGATATATCACATTATGGAGGAACACCACTCTCAAGAGCTCTCCATTCAGGCAGTTCACAGAAAAATACTCCCTGGACAATAGAGTTTCTGAACAGAATCAAGGAAAAGAGCAGGTTGCGTCAGCAGTCCCTTCCTGGTGACTTATCTGGCCCTAGTTTGGGTTATCCAGGGAATGTATCAAAGATTACCAAGAGAAGAAGTCCGTCTATTCTTGATTTTTACAAGTACCAAGGTGGCAACACTCCAAGAAAGTTCCCAGAAAAAAAAAAGCAGAAGCGACCTTTACAATCATCAAGCTCATCGAAGAATGAAACAATTTCAGCTCCTGCTCTTACCGAGTGGACACCTATTGACAAAAGAGCAAGACAGACACAATCTTTTGCAACAAATGATAGTGGAAACCAAACTAAGCTGGTGTGGAGTGATGGAGCTCATGGTGTCAGGAAAAAGTTTCAGATGCAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1389

Amino Acids

156.02

Weight (kDa)

4.85

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2017
AasI	GACNNNNNNGTC	1 cut(s)	775
AatII	GACGTC	1 cut(s)	1010
AbsI	CCTCGAGG	1 cut(s)	260
Acc36I	ACCTGC	2 cut(s)	2017, 3801
AccIII	TCCGGA	1 cut(s)	302
AciI	CCGC	7 cut(s)	36, 142, 254, 1304, 1602, 1718, 2429
AclWI	GGATC	5 cut(s)	79, 348, 375, 669, 3211
AcuI	CTGAAG	5 cut(s)	1569, 2577, 2613, 2775, 2784
AcvI	CACGTG	1 cut(s)	1428
AcyI	GRCGYC	1 cut(s)	1007
AflIII	ACRYGT	1 cut(s)	1427
AjnI	CCWGG	9 cut(s)	1038, 1867, 1918, 2433, 2672, 2910, 3770, 3832, 3865
AjuI	GAANNNNNNNTTGG	2 cut(s)	2822, 2854
Alw21I	GWGCWC	3 cut(s)	1427, 3739, 4132
Alw26I	GTCTC	7 cut(s)	169, 189, 282, 1035, 1086, 1149, 3590
AlwI	GGATC	5 cut(s)	79, 348, 375, 669, 3211
AlwNI	CAGNNNCTG	4 cut(s)	560, 2349, 3455, 4025
Ama87I	CYCGRG	4 cut(s)	260, 920, 1352, 2812
Aor13HI	TCCGGA	1 cut(s)	302
AoxI	GGCC	8 cut(s)	127, 264, 1725, 2043, 2431, 3131, 3612, 3847
ApeKI	GCWGC	8 cut(s)	2349, 2420, 2423, 2426, 2449, 2499, 3401, 3452
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	5 cut(s)	639, 1056, 2900, 2927, 3508
AspLEI	GCGC	2 cut(s)	1607, 1652
AsuC2I	CCSGG	2 cut(s)	56, 3616
AsuHPI	GGTGA	6 cut(s)	25, 83, 2759, 3425, 3651, 3848
AsuII	TTCGAA	1 cut(s)	409
AsuNHI	GCTAGC	2 cut(s)	1192, 1973
AvaI	CYCGRG	4 cut(s)	260, 920, 1352, 2812
AvaII	GGWCC	7 cut(s)	256, 703, 885, 924, 2804, 3159, 3268
AxyI	CCTNAGG	1 cut(s)	3135
BanII	GRGCYC	4 cut(s)	534, 822, 3739, 4132
BbrPI	CACGTG	1 cut(s)	1428
BbsI	GAAGAC	3 cut(s)	642, 2619, 2790
Bbv12I	GWGCWC	3 cut(s)	1427, 3739, 4132
BbvI	GCAGC	8 cut(s)	2336, 2432, 2435, 2438, 2461, 2486, 3388, 3439
BccI	CCATC	7 cut(s)	1199, 1398, 1448, 1541, 2053, 2402, 4118
BceAI	ACGGC	3 cut(s)	142, 294, 2902
BciT130I	CCWGG	9 cut(s)	1040, 1869, 1920, 2435, 2674, 2912, 3772, 3834, 3867
BciVI	GTATCC	2 cut(s)	1402, 2547
BclI	TGATCA	4 cut(s)	1243, 1834, 1885, 3049
BcnI	CCSGG	2 cut(s)	56, 3616
BcoDI	GTCTC	7 cut(s)	169, 189, 282, 1035, 1086, 1149, 3590
BfaI	CTAG	6 cut(s)	288, 1193, 1974, 2109, 3024, 3852
BfmI	CTRYAG	6 cut(s)	780, 1494, 1731, 2010, 2955, 3489
BfoI	RGCGCY	2 cut(s)	1608, 1653
BfuAI	ACCTGC	2 cut(s)	2017, 3801
BfuI	GTATCC	2 cut(s)	1402, 2547
BglII	AGATCT	2 cut(s)	904, 3544
BlpI	GCTNAGC	1 cut(s)	2022
BmcAI	AGTACT	2 cut(s)	2402, 2731
Bme18I	GGWCC	7 cut(s)	256, 703, 885, 924, 2804, 3159, 3268
BmeT110I	CYCGRG	4 cut(s)	260, 920, 1352, 2812
BmiI	GGNNCC	8 cut(s)	301, 385, 533, 886, 925, 926, 2916, 3523
BmsI	GCATC	7 cut(s)	424, 436, 969, 1006, 1328, 3351, 4146
BmtI	GCTAGC	2 cut(s)	1196, 1977
BpiI	GAAGAC	3 cut(s)	642, 2619, 2790
BpmI	CTGGAG	3 cut(s)	614, 1800, 2933
Bpu1102I	GCTNAGC	1 cut(s)	2022
Bpu14I	TTCGAA	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	3715
BpuMI	CCSGG	2 cut(s)	56, 3616
Bsa29I	ATCGAT	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	1428
BsaBI	GATNNNNATC	2 cut(s)	242, 3543
BsaHI	GRCGYC	1 cut(s)	1007
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 188, 218
Bse118I	RCCGGY	2 cut(s)	266, 2752
Bse1I	ACTGG	4 cut(s)	597, 1027, 1145, 1817
Bse21I	CCTNAGG	1 cut(s)	3135
Bse3DI	GCAATG	2 cut(s)	1220, 2145
Bse8I	GATNNNNATC	2 cut(s)	242, 3543
BseAI	TCCGGA	1 cut(s)	302
BseBI	CCWGG	9 cut(s)	1040, 1869, 1920, 2435, 2674, 2912, 3772, 3834, 3867
BseCI	ATCGAT	1 cut(s)	246
BseGI	GGATG	5 cut(s)	496, 793, 1021, 1149, 2682
BseJI	GATNNNNATC	2 cut(s)	242, 3543
BseMI	GCAATG	2 cut(s)	1220, 2145
BseNI	ACTGG	4 cut(s)	597, 1027, 1145, 1817
BseRI	GAGGAG	2 cut(s)	2776, 3608
BseXI	GCAGC	8 cut(s)	2336, 2432, 2435, 2438, 2461, 2486, 3388, 3439
BseYI	CCCAGC	1 cut(s)	822
BsgI	GTGCAG	2 cut(s)	1773, 1977
BshFI	GGCC	8 cut(s)	129, 266, 1727, 2045, 2433, 3133, 3614, 3849
BshVI	ATCGAT	1 cut(s)	246
BsiHKAI	GWGCWC	3 cut(s)	1427, 3739, 4132
BsiHKCI	CYCGRG	4 cut(s)	260, 920, 1352, 2812
BsiSI	CCGG	5 cut(s)	56, 267, 303, 2753, 3615
BslFI	GGGAC	7 cut(s)	898, 910, 1018, 1454, 2520, 2647, 3811
BsmAI	GTCTC	7 cut(s)	169, 189, 282, 1035, 1086, 1149, 3590
BsmBI	CGTCTC	3 cut(s)	189, 282, 1086
BsmFI	GGGAC	7 cut(s)	898, 910, 1018, 1454, 2520, 2647, 3811
BsmI	GAATGC	3 cut(s)	1551, 2550, 3678
BsnI	GGCC	8 cut(s)	129, 266, 1727, 2045, 2433, 3133, 3614, 3849
BsoBI	CYCGRG	4 cut(s)	260, 920, 1352, 2812
Bsp119I	TTCGAA	1 cut(s)	409
Bsp1286I	GDGCHC	5 cut(s)	534, 822, 1427, 3739, 4132
Bsp13I	TCCGGA	1 cut(s)	302
Bsp1720I	GCTNAGC	1 cut(s)	2022
Bsp19I	CCATGG	2 cut(s)	657, 1011
BspACI	CCGC	7 cut(s)	36, 142, 254, 1304, 1602, 1718, 2429
BspANI	GGCC	8 cut(s)	129, 266, 1727, 2045, 2433, 3133, 3614, 3849
BspDI	ATCGAT	1 cut(s)	246
BspEI	TCCGGA	1 cut(s)	302
BspHI	TCATGA	6 cut(s)	394, 613, 1186, 1246, 3219, 3603
BspLI	GGNNCC	8 cut(s)	301, 385, 533, 886, 925, 926, 2916, 3523
BspMAI	CTGCAG	2 cut(s)	2014, 3493
BspMI	ACCTGC	2 cut(s)	2017, 3801
BspOI	GCTAGC	2 cut(s)	1196, 1977
BspPI	GGATC	5 cut(s)	79, 348, 375, 669, 3211
BspT104I	TTCGAA	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	1220, 2145
BsrFI	RCCGGY	2 cut(s)	266, 2752
BsrI	ACTGG	4 cut(s)	597, 1027, 1145, 1817
BssAI	RCCGGY	2 cut(s)	266, 2752
BssNI	GRCGYC	1 cut(s)	1007
BssT1I	CCWWGG	6 cut(s)	602, 657, 888, 1011, 3628, 3928
Bst2UI	CCWGG	9 cut(s)	1040, 1869, 1920, 2435, 2674, 2912, 3772, 3834, 3867
Bst4CI	ACNGT	7 cut(s)	631, 1373, 1765, 2392, 3437, 3478, 3578
Bst6I	CTCTTC	5 cut(s)	345, 350, 424, 2794, 3602
BstACI	GRCGYC	1 cut(s)	1007
BstBAI	YACGTR	1 cut(s)	1428
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	6 cut(s)	268, 1194, 1563, 1975, 2431, 2639
BstDSI	CCRYGG	2 cut(s)	657, 1011
BstENI	CCTNNNNNAGG	1 cut(s)	3666
BstF5I	GGATG	5 cut(s)	496, 793, 1021, 1149, 2682
BstH2I	RGCGCY	2 cut(s)	1608, 1653
BstHHI	GCGC	2 cut(s)	1607, 1652
BstMAI	GTCTC	7 cut(s)	169, 189, 282, 1035, 1086, 1149, 3590
BstMWI	GCNNNNNNNGC	7 cut(s)	979, 1658, 2018, 2032, 2426, 2609, 2914
BstNI	CCWGG	9 cut(s)	1040, 1869, 1920, 2435, 2674, 2912, 3772, 3834, 3867
BstNSI	RCATGY	1 cut(s)	2513
BstSFI	CTRYAG	6 cut(s)	780, 1494, 1731, 2010, 2955, 3489
BstV1I	GCAGC	8 cut(s)	2336, 2432, 2435, 2438, 2461, 2486, 3388, 3439
BstV2I	GAAGAC	3 cut(s)	642, 2619, 2790
BstX2I	RGATCY	3 cut(s)	340, 904, 3544
BstXI	CCANNNNNNTGG	2 cut(s)	2395, 3480
BstYI	RGATCY	3 cut(s)	340, 904, 3544
Bsu15I	ATCGAT	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	3135
BsuI	GTATCC	2 cut(s)	1402, 2547
BsuRI	GGCC	8 cut(s)	129, 266, 1727, 2045, 2433, 3133, 3614, 3849
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	2 cut(s)	657, 1011
BtsCI	GGATG	5 cut(s)	496, 793, 1021, 1149, 2682
BtsI	GCAGTG	1 cut(s)	2019
BtsIMutI	CAGTG	6 cut(s)	590, 1418, 2019, 2350, 2388, 2799
BveI	ACCTGC	2 cut(s)	2017, 3801
Cac8I	GCNNGC	6 cut(s)	268, 1194, 1563, 1975, 2431, 2639
CaiI	CAGNNNCTG	4 cut(s)	560, 2349, 3455, 4025
CciI	TCATGA	6 cut(s)	394, 613, 1186, 1246, 3219, 3603
CfoI	GCGC	2 cut(s)	1607, 1652
Cfr10I	RCCGGY	2 cut(s)	266, 2752
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	3 cut(s)	206, 1499, 3806
DrdI	GACNNNNNNGTC	1 cut(s)	775
DseDI	GACNNNNNNGTC	1 cut(s)	775
Eam1104I	CTCTTC	5 cut(s)	345, 350, 424, 2794, 3602
EarI	CTCTTC	5 cut(s)	345, 350, 424, 2794, 3602
Ecl136II	GAGCTC	2 cut(s)	3737, 4130
Eco130I	CCWWGG	6 cut(s)	602, 657, 888, 1011, 3628, 3928
Eco147I	AGGCCT	1 cut(s)	1727
Eco24I	GRGCYC	4 cut(s)	534, 822, 3739, 4132
Eco32I	GATATC	3 cut(s)	375, 1699, 2194
Eco47I	GGWCC	7 cut(s)	256, 703, 885, 924, 2804, 3159, 3268
Eco53kI	GAGCTC	2 cut(s)	3737, 4130
Eco57I	CTGAAG	5 cut(s)	1569, 2577, 2613, 2775, 2784
Eco72I	CACGTG	1 cut(s)	1428
Eco81I	CCTNAGG	1 cut(s)	3135
Eco88I	CYCGRG	4 cut(s)	260, 920, 1352, 2812
EcoICRI	GAGCTC	2 cut(s)	3737, 4130
EcoNI	CCTNNNNNAGG	1 cut(s)	3666
EcoO109I	RGGNCCY	5 cut(s)	885, 924, 3131, 3159, 3268
EcoRI	GAATTC	2 cut(s)	2900, 3247
EcoRII	CCWGG	9 cut(s)	1038, 1867, 1918, 2433, 2672, 2910, 3770, 3832, 3865
EcoRV	GATATC	3 cut(s)	375, 1699, 2194
EcoT14I	CCWWGG	6 cut(s)	602, 657, 888, 1011, 3628, 3928
EcoT38I	GRGCYC	4 cut(s)	534, 822, 3739, 4132
ErhI	CCWWGG	6 cut(s)	602, 657, 888, 1011, 3628, 3928
Esp3I	CGTCTC	3 cut(s)	189, 282, 1086
FalI	AAGNNNNNCTT	2 cut(s)	2637, 2669
FaqI	GGGAC	7 cut(s)	898, 910, 1018, 1454, 2520, 2647, 3811
FauI	CCCGC	2 cut(s)	149, 2422
FauNDI	CATATG	3 cut(s)	457, 1267, 3109
FbaI	TGATCA	4 cut(s)	1243, 1834, 1885, 3049
FokI	GGATG	5 cut(s)	503, 800, 1028, 1156, 2689
FriOI	GRGCYC	4 cut(s)	534, 822, 3739, 4132
FspBI	CTAG	6 cut(s)	288, 1193, 1974, 2109, 3024, 3852
GlaI	GCGC	2 cut(s)	1606, 1651
GsaI	CCCAGC	1 cut(s)	826
GsuI	CTGGAG	3 cut(s)	614, 1800, 2933
HaeII	RGCGCY	2 cut(s)	1608, 1653
HaeIII	GGCC	8 cut(s)	129, 266, 1727, 2045, 2433, 3133, 3614, 3849
HapII	CCGG	5 cut(s)	56, 267, 303, 2753, 3615
HgaI	GACGC	3 cut(s)	206, 1499, 3806
HhaI	GCGC	2 cut(s)	1607, 1652
Hin1I	GRCGYC	1 cut(s)	1007
Hin6I	GCGC	2 cut(s)	1605, 1650
HinP1I	GCGC	2 cut(s)	1605, 1650
HincII	GTYRAC	1 cut(s)	2478
HindII	GTYRAC	1 cut(s)	2478
HindIII	AAGCTT	1 cut(s)	2271
HpaII	CCGG	5 cut(s)	56, 267, 303, 2753, 3615
HphI	GGTGA	6 cut(s)	25, 83, 2759, 3425, 3651, 3848
Hpy166II	GTNNAC	7 cut(s)	590, 805, 2074, 2478, 2750, 3755, 4041
Hpy8I	GTNNAC	7 cut(s)	590, 805, 2074, 2478, 2750, 3755, 4041
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4III	ACNGT	7 cut(s)	631, 1373, 1765, 2392, 3437, 3478, 3578
HpyCH4IV	ACGT	5 cut(s)	639, 1007, 1427, 2170, 2324
HpyF10VI	GCNNNNNNNGC	7 cut(s)	979, 1658, 2018, 2032, 2426, 2609, 2914
HpySE526I	ACGT	5 cut(s)	639, 1007, 1427, 2170, 2324
Hsp92I	GRCGYC	1 cut(s)	1007
HspAI	GCGC	2 cut(s)	1605, 1650
KflI	GGGWCCC	1 cut(s)	924
Kpn2I	TCCGGA	1 cut(s)	302
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Ksp22I	TGATCA	4 cut(s)	1243, 1834, 1885, 3049
Lsp1109I	GCAGC	8 cut(s)	2336, 2432, 2435, 2438, 2461, 2486, 3388, 3439
LweI	GCATC	7 cut(s)	424, 436, 969, 1006, 1328, 3351, 4146
MaeI	CTAG	6 cut(s)	288, 1193, 1974, 2109, 3024, 3852
MaeII	ACGT	5 cut(s)	639, 1007, 1427, 2170, 2324
MaeIII	GTNAC	7 cut(s)	1136, 1683, 1756, 2886, 3431, 3578, 3836
MfeI	CAATTG	1 cut(s)	182
MflI	RGATCY	3 cut(s)	340, 904, 3544
MhlI	GDGCHC	5 cut(s)	534, 822, 1427, 3739, 4132
MlyI	GAGTC	7 cut(s)	53, 143, 385, 626, 1436, 2561, 2804
MmeI	TCCRAC	7 cut(s)	68, 157, 468, 2535, 3351, 3497, 3499
MroI	TCCGGA	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	266
MroXI	GAANNNNTTC	5 cut(s)	639, 1056, 2900, 2927, 3508
MseI	TTAA	8 cut(s)	582, 956, 1506, 3093, 3143, 3273, 3425, 3569
MslI	CAYNNNNRTG	5 cut(s)	456, 1556, 2393, 3642, 3648
MspA1I	CMGCKG	2 cut(s)	2429, 3452
MspI	CCGG	5 cut(s)	56, 267, 303, 2753, 3615
MunI	CAATTG	1 cut(s)	182
Mva1269I	GAATGC	3 cut(s)	1551, 2550, 3678
MvaI	CCWGG	9 cut(s)	1040, 1869, 1920, 2435, 2674, 2912, 3772, 3834, 3867
MwoI	GCNNNNNNNGC	7 cut(s)	979, 1658, 2018, 2032, 2426, 2609, 2914
NaeI	GCCGGC	1 cut(s)	268
NciI	CCSGG	2 cut(s)	56, 3616
NcoI	CCATGG	2 cut(s)	657, 1011
NdeI	CATATG	3 cut(s)	457, 1267, 3109
NgoMIV	GCCGGC	1 cut(s)	266
NheI	GCTAGC	2 cut(s)	1192, 1973
NlaIV	GGNNCC	8 cut(s)	301, 385, 533, 886, 925, 926, 2916, 3523
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	4 cut(s)	1136, 1683, 3431, 3836
NspI	RCATGY	1 cut(s)	2513
NspV	TTCGAA	1 cut(s)	409
PaeR7I	CTCGAG	2 cut(s)	260, 1352
PagI	TCATGA	6 cut(s)	394, 613, 1186, 1246, 3219, 3603
PaqCI	CACCTGC	1 cut(s)	2017
PceI	AGGCCT	1 cut(s)	1727
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	3 cut(s)	1551, 2550, 3678
PdiI	GCCGGC	1 cut(s)	268
PdmI	GAANNNNTTC	5 cut(s)	639, 1056, 2900, 2927, 3508
PleI	GAGTC	7 cut(s)	53, 143, 385, 625, 1436, 2560, 2804
PmaCI	CACGTG	1 cut(s)	1428
PmlI	CACGTG	1 cut(s)	1428
PpsI	GAGTC	7 cut(s)	53, 143, 385, 625, 1436, 2560, 2804
Ppu21I	YACGTR	1 cut(s)	1428
PpuMI	RGGWCCY	4 cut(s)	885, 924, 3159, 3268
Psp124BI	GAGCTC	2 cut(s)	3739, 4132
Psp5II	RGGWCCY	4 cut(s)	885, 924, 3159, 3268
Psp6I	CCWGG	9 cut(s)	1038, 1867, 1918, 2433, 2672, 2910, 3770, 3832, 3865
PspCI	CACGTG	1 cut(s)	1428
PspFI	CCCAGC	1 cut(s)	822
PspGI	CCWGG	9 cut(s)	1038, 1867, 1918, 2433, 2672, 2910, 3770, 3832, 3865
PspN4I	GGNNCC	8 cut(s)	301, 385, 533, 886, 925, 926, 2916, 3523
PspPPI	RGGWCCY	4 cut(s)	885, 924, 3159, 3268
PspXI	VCTCGAGB	1 cut(s)	260
PstI	CTGCAG	2 cut(s)	2014, 3493
PstNI	CAGNNNCTG	4 cut(s)	560, 2349, 3455, 4025
PsuI	RGATCY	3 cut(s)	340, 904, 3544
PvuII	CAGCTG	1 cut(s)	3452
RseI	CAYNNNNRTG	5 cut(s)	456, 1556, 2393, 3642, 3648
SacI	GAGCTC	2 cut(s)	3739, 4132
SaqAI	TTAA	8 cut(s)	582, 956, 1506, 3093, 3143, 3273, 3425, 3569
ScaI	AGTACT	2 cut(s)	2402, 2731
SchI	GAGTC	7 cut(s)	53, 143, 385, 626, 1436, 2561, 2804
SduI	GDGCHC	5 cut(s)	534, 822, 1427, 3739, 4132
SfaNI	GCATC	7 cut(s)	424, 436, 969, 1006, 1328, 3351, 4146
SfcI	CTRYAG	6 cut(s)	780, 1494, 1731, 2010, 2955, 3489
Sfr274I	CTCGAG	2 cut(s)	260, 1352
SfuI	TTCGAA	1 cut(s)	409
SinI	GGWCC	7 cut(s)	256, 703, 885, 924, 2804, 3159, 3268
SlaI	CTCGAG	2 cut(s)	260, 1352
SmiMI	CAYNNNNRTG	5 cut(s)	456, 1556, 2393, 3642, 3648
SmlI	CTYRAG	3 cut(s)	260, 1352, 3730
SmoI	CTYRAG	3 cut(s)	260, 1352, 3730
SseBI	AGGCCT	1 cut(s)	1727
SsiI	CCGC	7 cut(s)	36, 142, 254, 1304, 1602, 1718, 2429
SspI	AATATT	3 cut(s)	814, 2305, 2622
SspMI	CTAG	6 cut(s)	288, 1193, 1974, 2109, 3024, 3852
SstI	GAGCTC	2 cut(s)	3739, 4132
StuI	AGGCCT	1 cut(s)	1727
StyI	CCWWGG	6 cut(s)	602, 657, 888, 1011, 3628, 3928
TaaI	ACNGT	7 cut(s)	631, 1373, 1765, 2392, 3437, 3478, 3578
TaiI	ACGT	5 cut(s)	642, 1010, 1430, 2173, 2327
TatI	WGTACW	2 cut(s)	2400, 2729
TauI	GCSGC	2 cut(s)	1306, 1605
Tru1I	TTAA	8 cut(s)	582, 956, 1506, 3093, 3143, 3273, 3425, 3569
Tru9I	TTAA	8 cut(s)	582, 956, 1506, 3093, 3143, 3273, 3425, 3569
TscAI	CASTG	6 cut(s)	597, 1425, 2019, 2350, 2395, 2799
TseFI	GTSAC	4 cut(s)	1136, 1683, 3431, 3836
TseI	GCWGC	8 cut(s)	2349, 2420, 2423, 2426, 2449, 2499, 3401, 3452
Tsp45I	GTSAC	4 cut(s)	1136, 1683, 3431, 3836
TspGWI	ACGGA	2 cut(s)	3086, 3891
TspRI	CASTG	6 cut(s)	597, 1425, 2019, 2350, 2395, 2799
VpaK11BI	GGWCC	7 cut(s)	256, 703, 885, 924, 2804, 3159, 3268
XagI	CCTNNNNNAGG	1 cut(s)	3666
XbaI	TCTAGA	2 cut(s)	287, 2108
XceI	RCATGY	1 cut(s)	2513
XhoI	CTCGAG	2 cut(s)	260, 1352
XmnI	GAANNNNTTC	5 cut(s)	639, 1056, 2900, 2927, 3508
XspI	CTAG	6 cut(s)	288, 1193, 1974, 2109, 3024, 3852
ZraI	GACGTC	1 cut(s)	1008
ZrmI	AGTACT	2 cut(s)	2402, 2731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.