Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Forward (+)

3607969 .. 3609295

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGTTCATCATATGCCGTTATTGAGGAAAACCTTACTGATGTAAAGCCACAGCCGCTATCTGCATCAGATCAGATTTACTTGGATTGTCATCTTCTTGAGAAAGATAGTACCTGCCATGATTATTCCTTTCAGAAGAAGATGTTGGAGGATATGAATCCGCTCAGCATTGGTTTCTATTGGGATTCATTTGATGATGGAAAGTTCGATGACTTGGTGTTCTCTGATGATGCTGTAGAGAACACAGAAGAAATGGAATTACAGGTGTTTCTTTCTGATGCCATTCCTATGCTTACTGGTCATCTTGGAGATGCTTCAACCAGATTGTCATGCGACAATTTTCCATTGACAAAGAAAGGAGAGCATATAGATAAAAAAAAAAGTTCTGTAGATGGATTAAACAAAGATGAAAGCAAGGAATTTCAGTTGCTGCTCTCTGATGGCATTGATATTCATACCGGTCATATTGTAGATGCTTTAACAAAATTGTTTGGTGGCAATTTTCCACAGCCTAAAAAAGAACAGCAGAGAGAGAAAAAGGGTGCTGAGAGGGCTTCATTGCTTTTCAAGTCTCTGTCACAATTCAATGATATTGACTTTTTCTTGAATCCTCGGACGGCCTCTAAGGCTGGAAATAGTGATTGTGCAGTTACGGCAGTTGATAAGATTGCTCCATTCCATACATGTATACTAACACCAGCTGTATCCCAGGGTGAACGATTTCGTTCTATATGTGCTCAAGTTGAGCATAGGAATGAGCAGAAGTCAAAGGAACTCTTTAACAGTTTTCCGTGTCCGGAAGAGTATAATATGAGATCTAAAGAGGATTCAGATGATGTTGAAGCTAGCAGTACTATCCCCCCACCTATTCCTTCTATGCCGTTTGCGATGGAAGCTGACTATATTCAGCAGAGCATCATGTCTTTCCCTGAGACGGTCGTTGTTGTAAACACTCAAAATCTAGATAAGGAAATGATAGTCTCCAGAAGTACTTATCAAAAAATGCTTGCAATGGAGAAAAAAGGTGCACAAGCCGTAGAACGTGATTCAGAGCTACCAGTGGACATTGTACTCAGTCCTGCAGTGTGTTTAGTGTGGTATGACTGCAGAAACATTGGAACTTCTCTTGATGAAGCTTCTTCATGCTTACCTTTGTGCATTGAGAACAACGCCACAAATGATTTGACATTGCTGAGTATTACTTGTTTGGACCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

45.37

Weight (kDa)

4.61

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	688
AccIII	TCCGGA	1 cut(s)	796
AciI	CCGC	2 cut(s)	56, 161
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	4 cut(s)	112, 853, 991, 1071
AfiI	CCNNNNNNNGG	1 cut(s)	934
AflIII	ACRYGT	1 cut(s)	683
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	5 cut(s)	318, 568, 586, 607, 842
AjnI	CCWGG	1 cut(s)	708
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	5 cut(s)	701, 845, 896, 1054, 1136
AluI	AGCT	5 cut(s)	701, 845, 896, 1054, 1136
Alw21I	GWGCWC	2 cut(s)	739, 1030
Alw26I	GTCTC	3 cut(s)	576, 926, 985
Alw44I	GTGCAC	1 cut(s)	1026
AlwNI	CAGNNNCTG	1 cut(s)	430
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	1 cut(s)	618
ApaLI	GTGCAC	1 cut(s)	1026
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	419
AsiGI	ACCGGT	1 cut(s)	458
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	1210
AsuHPI	GGTGA	1 cut(s)	725
AsuNHI	GCTAGC	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	1210
BaeGI	GKGCMC	1 cut(s)	1030
Bbv12I	GWGCWC	2 cut(s)	739, 1030
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	191, 386, 434, 883
BceAI	ACGGC	5 cut(s)	2, 633, 669, 865, 1019
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	576, 926, 985
BfaI	CTAG	2 cut(s)	846, 962
BfmI	CTRYAG	4 cut(s)	234, 387, 1080, 1105
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	715
BglI	GCCNNNNNGGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	815
BisI	GCNGC	2 cut(s)	56, 431
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	2 cut(s)	57, 432
BmcAI	AGTACT	2 cut(s)	853, 991
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	1210
BmgT120I	GGNCC	1 cut(s)	1210
BmiI	GGNNCC	1 cut(s)	1212
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	6 cut(s)	74, 220, 268, 301, 463, 924
BmtI	GCTAGC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	967
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	119, 723
BsaBI	GATNNNNATC	2 cut(s)	90, 156
BsaJI	CCNNGG	3 cut(s)	611, 708, 709
BsaWI	WCCGGW	2 cut(s)	458, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	934
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	2 cut(s)	301, 1058
Bse3DI	GCAATG	3 cut(s)	557, 1017, 1187
Bse8I	GATNNNNATC	2 cut(s)	90, 156
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	3 cut(s)	611, 708, 709
BseJI	GATNNNNATC	2 cut(s)	90, 156
BseLI	CCNNNNNNNGG	1 cut(s)	934
BseMI	GCAATG	3 cut(s)	557, 1017, 1187
BseMII	CTCAG	5 cut(s)	178, 537, 921, 1087, 1184
BseNI	ACTGG	2 cut(s)	301, 1058
BseSI	GKGCMC	1 cut(s)	1030
BseXI	GCAGC	1 cut(s)	417
BsgI	GTGCAG	1 cut(s)	666
Bsh1285I	CGRYCG	1 cut(s)	939
BshFI	GGCC	1 cut(s)	620
BshTI	ACCGGT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	939
BsiHKAI	GWGCWC	2 cut(s)	739, 1030
BsiSI	CCGG	2 cut(s)	459, 797
BslI	CCNNNNNNNGG	1 cut(s)	934
BsmAI	GTCTC	3 cut(s)	576, 926, 985
BsmBI	CGTCTC	1 cut(s)	926
BsnI	GGCC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	739, 1030
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	2 cut(s)	70, 815
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	2 cut(s)	56, 161
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	5 cut(s)	177, 538, 922, 1086, 1185
BspEI	TCCGGA	1 cut(s)	796
BspLI	GGNNCC	1 cut(s)	1212
BspMAI	CTGCAG	2 cut(s)	1084, 1109
BspMI	ACCTGC	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	849
BsrBI	CCGCTC	1 cut(s)	163
BsrDI	GCAATG	3 cut(s)	557, 1017, 1187
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	301, 1058
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	611, 708, 709
BssMI	GATC	2 cut(s)	70, 815
BssNAI	GTATAC	1 cut(s)	689
Bst1107I	GTATAC	1 cut(s)	689
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	785, 937
Bst6I	CTCTTC	1 cut(s)	795
BstC8I	GCNNGC	2 cut(s)	847, 1008
BstDEI	CTNAG	6 cut(s)	164, 546, 624, 930, 1073, 1193
BstKTI	GATC	2 cut(s)	73, 818
BstMAI	GTCTC	3 cut(s)	576, 926, 985
BstMBI	GATC	2 cut(s)	70, 815
BstMCI	CGRYCG	1 cut(s)	939
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 551, 626, 653, 893
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	4 cut(s)	234, 387, 1080, 1105
BstSLI	GKGCMC	1 cut(s)	1030
BstV1I	GCAGC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
BstZ17I	GTATAC	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	620
BtgZI	GCGATG	1 cut(s)	902
BtsI	GCAGTG	1 cut(s)	1089
BtsIMutI	CAGTG	2 cut(s)	1065, 1089
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	847, 1008
CaiI	CAGNNNCTG	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	1210
Csp6I	GTAC	4 cut(s)	111, 852, 990, 1070
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	5 cut(s)	119, 330, 684, 919, 1143
CviQI	GTAC	4 cut(s)	111, 852, 990, 1070
DdeI	CTNAG	6 cut(s)	164, 546, 624, 930, 1073, 1193
DpnI	GATC	2 cut(s)	72, 817
DpnII	GATC	2 cut(s)	70, 815
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Eco47I	GGWCC	1 cut(s)	1210
EcoRII	CCWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	926
FaeI	CATG	5 cut(s)	122, 333, 687, 922, 1146
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	5 cut(s)	118, 329, 683, 918, 1142
FauNDI	CATATG	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	688
Fnu4HI	GCNGC	2 cut(s)	56, 431
Fsp4HI	GCNGC	2 cut(s)	56, 431
FspBI	CTAG	2 cut(s)	846, 962
GluI	GCNGC	2 cut(s)	56, 431
GsuI	CTGGAG	1 cut(s)	967
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	2 cut(s)	459, 797
Hin1II	CATG	5 cut(s)	122, 333, 687, 922, 1146
HindIII	AAGCTT	1 cut(s)	1134
HinfI	GANTC	5 cut(s)	157, 185, 607, 827, 1046
HpaII	CCGG	2 cut(s)	459, 797
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	5 cut(s)	689, 716, 949, 1028, 1063
Hpy188I	TCNGA	9 cut(s)	70, 75, 135, 226, 277, 439, 615, 832, 1051
Hpy188III	TCNNGA	6 cut(s)	98, 604, 797, 962, 984, 1127
Hpy8I	GTNNAC	5 cut(s)	689, 716, 949, 1028, 1063
HpyAV	CCTTC	1 cut(s)	882
HpyCH4III	ACNGT	2 cut(s)	785, 937
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	7 cut(s)	65, 647, 1010, 1028, 1082, 1107, 1158
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 551, 626, 653, 893
HpyF3I	CTNAG	6 cut(s)	164, 546, 624, 930, 1073, 1193
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	5 cut(s)	122, 333, 687, 922, 1146
Kpn2I	TCCGGA	1 cut(s)	796
Kzo9I	GATC	2 cut(s)	70, 815
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	6 cut(s)	74, 220, 268, 301, 463, 924
MaeI	CTAG	2 cut(s)	846, 962
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	2 cut(s)	576, 649
MalI	GATC	2 cut(s)	72, 817
MbiI	CCGCTC	1 cut(s)	163
MboI	GATC	2 cut(s)	70, 815
MboII	GAAGA	6 cut(s)	86, 148, 151, 260, 812, 1131
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	2 cut(s)	739, 1030
MluCI	AATT	6 cut(s)	257, 337, 419, 485, 499, 581
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	19, 142, 543, 621, 631, 817
MroI	TCCGGA	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	3 cut(s)	398, 479, 780
MslI	CAYNNNNRTG	2 cut(s)	287, 753
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	2 cut(s)	459, 797
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	5 cut(s)	55, 551, 626, 653, 893
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	2 cut(s)	70, 815
NheI	GCTAGC	1 cut(s)	845
NlaIII	CATG	5 cut(s)	122, 333, 687, 922, 1146
NlaIV	GGNNCC	1 cut(s)	1212
NmuCI	GTSAC	1 cut(s)	576
NspI	RCATGY	1 cut(s)	687
PasI	CCCWGGG	1 cut(s)	709
PciI	ACATGT	1 cut(s)	683
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	5 cut(s)	157, 185, 607, 827, 1046
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	57, 432
PscI	ACATGT	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	1 cut(s)	1212
PspPI	GGNCC	1 cut(s)	1210
PstI	CTGCAG	2 cut(s)	1084, 1109
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	4 cut(s)	112, 853, 991, 1071
RsaNI	GTAC	4 cut(s)	111, 852, 990, 1070
RseI	CAYNNNNRTG	2 cut(s)	287, 753
SaqAI	TTAA	3 cut(s)	398, 479, 780
SatI	GCNGC	2 cut(s)	56, 431
Sau3AI	GATC	2 cut(s)	70, 815
Sau96I	GGNCC	1 cut(s)	1210
ScaI	AGTACT	2 cut(s)	853, 991
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	2 cut(s)	739, 1030
SfaNI	GCATC	6 cut(s)	74, 220, 268, 301, 463, 924
SfcI	CTRYAG	4 cut(s)	234, 387, 1080, 1105
SinI	GGWCC	1 cut(s)	1210
SmiMI	CAYNNNNRTG	2 cut(s)	287, 753
SmlI	CTYRAG	2 cut(s)	98, 738
SmoI	CTYRAG	2 cut(s)	98, 738
Sse9I	AATT	6 cut(s)	257, 337, 419, 485, 499, 581
SsiI	CCGC	2 cut(s)	56, 161
SspMI	CTAG	2 cut(s)	846, 962
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	785, 937
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	1 cut(s)	207
TasI	AATT	6 cut(s)	257, 337, 419, 485, 499, 581
TatI	WGTACW	3 cut(s)	851, 989, 1069
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	5 cut(s)	157, 185, 607, 827, 1046
Tru1I	TTAA	3 cut(s)	398, 479, 780
Tru9I	TTAA	3 cut(s)	398, 479, 780
TscAI	CASTG	2 cut(s)	1065, 1089
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	7 cut(s)	170, 177, 423, 443, 546, 1131, 1146
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	2 cut(s)	1065, 1089
VneI	GTGCAC	1 cut(s)	1026
VpaK11BI	GGWCC	1 cut(s)	1210
XapI	RAATTY	1 cut(s)	419
XbaI	TCTAGA	1 cut(s)	961
XceI	RCATGY	1 cut(s)	687
XmiI	GTMKAC	1 cut(s)	688
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	2 cut(s)	846, 962
ZrmI	AGTACT	2 cut(s)	853, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.