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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52290 |
| fragaria_vesca | FvH4_7g29470 FvH4_7g29470 |
| malus_domestica | MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1 |
| prunus_persica | Prupe.2G294300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0377251 |
| rosa_laevigata | RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471 |
| rosa_multiflora | Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00281340 |
| rosa_rugosa | Rorug01G0402700 Rorug01G0402700 |
| rosa_samantha | Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900 |
| rosa_wichuraiana | Rw1G036840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1379 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 757, 2317 |
| AatII | GACGTC | 1 cut(s) | 225 |
| Acc36I | ACCTGC | 3 cut(s) | 1379, 2430, 2916 |
| AccBSI | CCGCTC | 1 cut(s) | 1420 |
| AccI | GTMKAC | 1 cut(s) | 246 |
| AccII | CGCG | 1 cut(s) | 200 |
| AccIII | TCCGGA | 1 cut(s) | 388 |
| AciI | CCGC | 6 cut(s) | 195, 198, 254, 1313, 1418, 2770 |
| AclWI | GGATC | 7 cut(s) | 143, 520, 648, 922, 2102, 2115, 2288 |
| AcsI | RAATTY | 6 cut(s) | 398, 745, 1058, 2387, 2510, 3029 |
| AcuI | CTGAAG | 4 cut(s) | 561, 1740, 1938, 1947 |
| AcyI | GRCGYC | 1 cut(s) | 222 |
| AfaI | GTAC | 5 cut(s) | 459, 1233, 2021, 2558, 3099 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 911, 949, 985, 1976, 2428, 2949, 2971, 2972, 3143 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 622 |
| AjnI | CCWGG | 3 cut(s) | 1200, 1596, 2885 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1385, 1417 |
| AleI | CACNNNNGTG | 1 cut(s) | 448 |
| Alw26I | GTCTC | 9 cut(s) | 169, 386, 390, 1152, 1527, 1806, 1830, 2394, 2659 |
| AlwI | GGATC | 7 cut(s) | 143, 520, 648, 922, 2102, 2115, 2288 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2618, 2886 |
| Ama87I | CYCGRG | 2 cut(s) | 923, 2261 |
| Aor13HI | TCCGGA | 1 cut(s) | 388 |
| AoxI | GGCC | 3 cut(s) | 919, 1967, 2372 |
| ApeKI | GCWGC | 9 cut(s) | 294, 371, 1583, 1586, 1589, 1612, 1662, 2117, 2564 |
| ApoI | RAATTY | 6 cut(s) | 398, 745, 1058, 2387, 2510, 3029 |
| AspLEI | GCGC | 4 cut(s) | 202, 279, 2934, 2992 |
| AspS9I | GGNCC | 9 cut(s) | 682, 927, 1967, 2319, 2363, 2372, 2648, 2775, 3245 |
| AsuHPI | GGTGA | 6 cut(s) | 25, 68, 95, 184, 1922, 2588 |
| AsuII | TTCGAA | 1 cut(s) | 660 |
| AsuNHI | GCTAGC | 1 cut(s) | 1195 |
| AvaI | CYCGRG | 2 cut(s) | 923, 2261 |
| AvaII | GGWCC | 7 cut(s) | 682, 927, 2319, 2363, 2648, 2775, 3245 |
| BamHI | GGATCC | 1 cut(s) | 2107 |
| BauI | CACGAG | 1 cut(s) | 2807 |
| BbsI | GAAGAC | 4 cut(s) | 621, 1104, 1782, 1953 |
| BbvI | GCAGC | 9 cut(s) | 306, 358, 1570, 1598, 1601, 1624, 1649, 2129, 2551 |
| BccI | CCATC | 8 cut(s) | 92, 422, 662, 943, 1448, 1565, 3025, 3227 |
| BceAI | ACGGC | 3 cut(s) | 290, 889, 2247 |
| BciT130I | CCWGG | 3 cut(s) | 1202, 1598, 2887 |
| BciVI | GTATCC | 5 cut(s) | 588, 642, 2221, 2536, 2790 |
| BclI | TGATCA | 1 cut(s) | 2209 |
| BcoDI | GTCTC | 9 cut(s) | 169, 386, 390, 1152, 1527, 1806, 1830, 2394, 2659 |
| BfaI | CTAG | 4 cut(s) | 56, 1196, 2184, 2961 |
| BfmI | CTRYAG | 4 cut(s) | 353, 1491, 1584, 2115 |
| BfuAI | ACCTGC | 3 cut(s) | 1379, 2430, 2916 |
| BfuI | GTATCC | 5 cut(s) | 588, 642, 2221, 2536, 2790 |
| BlpI | GCTNAGC | 1 cut(s) | 1421 |
| BmcAI | AGTACT | 1 cut(s) | 459 |
| Bme1390I | CCNGG | 3 cut(s) | 1202, 1598, 2887 |
| Bme18I | GGWCC | 7 cut(s) | 682, 927, 2319, 2363, 2648, 2775, 3245 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 622 |
| BmeT110I | CYCGRG | 2 cut(s) | 923, 2261 |
| BmgT120I | GGNCC | 9 cut(s) | 682, 927, 1967, 2319, 2363, 2372, 2648, 2775, 3245 |
| BmrFI | CCNGG | 3 cut(s) | 1202, 1598, 2887 |
| BmrI | ACTGGG | 1 cut(s) | 1037 |
| BmsI | GCATC | 8 cut(s) | 253, 430, 1331, 1357, 1477, 2077, 2086, 2514 |
| BmtI | GCTAGC | 1 cut(s) | 1199 |
| BmuI | ACTGGG | 1 cut(s) | 1037 |
| BpiI | GAAGAC | 4 cut(s) | 621, 1104, 1782, 1953 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1788, 1820 |
| BpmI | CTGGAG | 3 cut(s) | 431, 1815, 2093 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1191, 2529 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1421 |
| Bpu14I | TTCGAA | 1 cut(s) | 660 |
| BpuEI | CTTGAG | 2 cut(s) | 1376, 2614 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1347, 1413 |
| BsaHI | GRCGYC | 1 cut(s) | 222 |
| BsaI | GGTCTC | 1 cut(s) | 1830 |
| BsaJI | CCNNGG | 7 cut(s) | 636, 922, 1200, 1597, 2505, 2885, 2948 |
| BsaWI | WCCGGW | 1 cut(s) | 388 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 25, 55, 2764, 2794 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 911, 949, 985, 1976, 2428, 2949, 2971, 2972, 3143 |
| Bse118I | RCCGGY | 1 cut(s) | 374 |
| Bse1I | ACTGG | 8 cut(s) | 448, 1030, 1043, 1148, 1546, 2778, 3095, 3148 |
| Bse3DI | GCAATG | 3 cut(s) | 249, 1223, 2992 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1347, 1413 |
| BseAI | TCCGGA | 1 cut(s) | 388 |
| BseBI | CCWGG | 3 cut(s) | 1202, 1598, 2887 |
| BseDI | CCNNGG | 7 cut(s) | 636, 922, 1200, 1597, 2505, 2885, 2948 |
| BseJI | GATNNNNATC | 2 cut(s) | 1347, 1413 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 911, 949, 985, 1976, 2428, 2949, 2971, 2972, 3143 |
| BseMI | GCAATG | 3 cut(s) | 249, 1223, 2992 |
| BseMII | CTCAG | 9 cut(s) | 245, 349, 936, 1182, 1435, 1581, 1989, 2309, 2520 |
| BseNI | ACTGG | 8 cut(s) | 448, 1030, 1043, 1148, 1546, 2778, 3095, 3148 |
| BseRI | GAGGAG | 3 cut(s) | 90, 1939, 2771 |
| BseXI | GCAGC | 9 cut(s) | 306, 358, 1570, 1598, 1601, 1624, 1649, 2129, 2551 |
| Bsh1236I | CGCG | 1 cut(s) | 200 |
| BshFI | GGCC | 3 cut(s) | 921, 1969, 2374 |
| BsiHKCI | CYCGRG | 2 cut(s) | 923, 2261 |
| BsiSI | CCGG | 3 cut(s) | 291, 375, 389 |
| BslFI | GGGAC | 7 cut(s) | 363, 913, 961, 2323, 2376, 2868, 2966 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 911, 949, 985, 1976, 2428, 2949, 2971, 2972, 3143 |
| BsmAI | GTCTC | 9 cut(s) | 169, 386, 390, 1152, 1527, 1806, 1830, 2394, 2659 |
| BsmBI | CGTCTC | 1 cut(s) | 1806 |
| BsmFI | GGGAC | 7 cut(s) | 363, 913, 961, 2323, 2376, 2868, 2966 |
| BsnI | GGCC | 3 cut(s) | 921, 1969, 2374 |
| Bso31I | GGTCTC | 1 cut(s) | 1830 |
| BsoBI | CYCGRG | 2 cut(s) | 923, 2261 |
| Bsp119I | TTCGAA | 1 cut(s) | 660 |
| Bsp13I | TCCGGA | 1 cut(s) | 388 |
| Bsp143I | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1421 |
| Bsp19I | CCATGG | 2 cut(s) | 636, 2505 |
| BspACI | CCGC | 6 cut(s) | 195, 198, 254, 1313, 1418, 2770 |
| BspANI | GGCC | 3 cut(s) | 921, 1969, 2374 |
| BspCNI | CTCAG | 9 cut(s) | 244, 348, 937, 1183, 1434, 1580, 1988, 2308, 2521 |
| BspEI | TCCGGA | 1 cut(s) | 388 |
| BspFNI | CGCG | 1 cut(s) | 200 |
| BspHI | TCATGA | 2 cut(s) | 592, 1828 |
| BspMAI | CTGCAG | 3 cut(s) | 357, 1588, 2119 |
| BspMI | ACCTGC | 3 cut(s) | 1379, 2430, 2916 |
| BspOI | GCTAGC | 1 cut(s) | 1199 |
| BspPI | GGATC | 7 cut(s) | 143, 520, 648, 922, 2102, 2115, 2288 |
| BspT104I | TTCGAA | 1 cut(s) | 660 |
| BspTNI | GGTCTC | 1 cut(s) | 1830 |
| BsrBI | CCGCTC | 1 cut(s) | 1420 |
| BsrDI | GCAATG | 3 cut(s) | 249, 1223, 2992 |
| BsrFI | RCCGGY | 1 cut(s) | 374 |
| BsrI | ACTGG | 8 cut(s) | 448, 1030, 1043, 1148, 1546, 2778, 3095, 3148 |
| BssAI | RCCGGY | 1 cut(s) | 374 |
| BssECI | CCNNGG | 7 cut(s) | 636, 922, 1200, 1597, 2505, 2885, 2948 |
| BssMI | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| BssNI | GRCGYC | 1 cut(s) | 222 |
| BssSI | CACGAG | 1 cut(s) | 2807 |
| BssT1I | CCWWGG | 2 cut(s) | 636, 2505 |
| Bst2BI | CACGAG | 1 cut(s) | 2807 |
| Bst2UI | CCWGG | 3 cut(s) | 1202, 1598, 2887 |
| Bst4CI | ACNGT | 5 cut(s) | 183, 1555, 1788, 2614, 2882 |
| Bst6I | CTCTTC | 2 cut(s) | 418, 1957 |
| BstACI | GRCGYC | 1 cut(s) | 222 |
| BstBI | TTCGAA | 1 cut(s) | 660 |
| BstC8I | GCNNGC | 5 cut(s) | 1012, 1039, 1197, 1594, 2936 |
| BstDSI | CCRYGG | 3 cut(s) | 636, 2505, 2948 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2426 |
| BstFNI | CGCG | 1 cut(s) | 200 |
| BstHHI | GCGC | 4 cut(s) | 202, 279, 2934, 2992 |
| BstKTI | GATC | 9 cut(s) | 151, 192, 528, 643, 917, 2110, 2212, 2283, 2455 |
| BstMAI | GTCTC | 9 cut(s) | 169, 386, 390, 1152, 1527, 1806, 1830, 2394, 2659 |
| BstMBI | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1118, 1312, 1589, 1772, 2074, 2931 |
| BstNI | CCWGG | 3 cut(s) | 1202, 1598, 2887 |
| BstNSI | RCATGY | 1 cut(s) | 1041 |
| BstSCI | CCNGG | 3 cut(s) | 1200, 1596, 2885 |
| BstSFI | CTRYAG | 4 cut(s) | 353, 1491, 1584, 2115 |
| BstUI | CGCG | 1 cut(s) | 200 |
| BstV1I | GCAGC | 9 cut(s) | 306, 358, 1570, 1598, 1601, 1624, 1649, 2129, 2551 |
| BstV2I | GAAGAC | 4 cut(s) | 621, 1104, 1782, 1953 |
| BstX2I | RGATCY | 4 cut(s) | 525, 914, 2107, 2280 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1558, 2506 |
| BstYI | RGATCY | 4 cut(s) | 525, 914, 2107, 2280 |
| BsuI | GTATCC | 5 cut(s) | 588, 642, 2221, 2536, 2790 |
| BsuRI | GGCC | 3 cut(s) | 921, 1969, 2374 |
| BtgI | CCRYGG | 3 cut(s) | 636, 2505, 2948 |
| BtsI | GCAGTG | 1 cut(s) | 304 |
| BtsIMutI | CAGTG | 6 cut(s) | 304, 455, 1551, 1962, 2091, 2785 |
| BveI | ACCTGC | 3 cut(s) | 1379, 2430, 2916 |
| Cac8I | GCNNGC | 5 cut(s) | 1012, 1039, 1197, 1594, 2936 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2618, 2886 |
| CciI | TCATGA | 2 cut(s) | 592, 1828 |
| CfoI | GCGC | 4 cut(s) | 202, 279, 2934, 2992 |
| Cfr10I | RCCGGY | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 9 cut(s) | 682, 927, 1967, 2319, 2363, 2372, 2648, 2775, 3245 |
| CseI | GACGC | 1 cut(s) | 1788 |
| Csp6I | GTAC | 5 cut(s) | 458, 1232, 2020, 2557, 3098 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 792, 827 |
| CviQI | GTAC | 5 cut(s) | 458, 1232, 2020, 2557, 3098 |
| DpnI | GATC | 9 cut(s) | 150, 191, 527, 642, 916, 2109, 2211, 2282, 2454 |
| DpnII | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| DraI | TTTAAA | 1 cut(s) | 1108 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 757, 2317 |
| DriI | GACNNNNNGTC | 1 cut(s) | 622 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 757, 2317 |
| Eam1104I | CTCTTC | 2 cut(s) | 418, 1957 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 622 |
| EarI | CTCTTC | 2 cut(s) | 418, 1957 |
| EciI | GGCGGA | 1 cut(s) | 2785 |
| Eco130I | CCWWGG | 2 cut(s) | 636, 2505 |
| Eco31I | GGTCTC | 1 cut(s) | 1830 |
| Eco32I | GATATC | 1 cut(s) | 2346 |
| Eco47I | GGWCC | 7 cut(s) | 682, 927, 2319, 2363, 2648, 2775, 3245 |
| Eco57I | CTGAAG | 4 cut(s) | 561, 1740, 1938, 1947 |
| Eco88I | CYCGRG | 2 cut(s) | 923, 2261 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2426 |
| EcoO109I | RGGNCCY | 2 cut(s) | 927, 2648 |
| EcoRI | GAATTC | 1 cut(s) | 2510 |
| EcoRII | CCWGG | 3 cut(s) | 1200, 1596, 2885 |
| EcoRV | GATATC | 1 cut(s) | 2346 |
| EcoT14I | CCWWGG | 2 cut(s) | 636, 2505 |
| ErhI | CCWWGG | 2 cut(s) | 636, 2505 |
| Esp3I | CGTCTC | 1 cut(s) | 1806 |
| FaqI | GGGAC | 7 cut(s) | 363, 913, 961, 2323, 2376, 2868, 2966 |
| FbaI | TGATCA | 1 cut(s) | 2209 |
| FblI | GTMKAC | 1 cut(s) | 246 |
| FspBI | CTAG | 4 cut(s) | 56, 1196, 2184, 2961 |
| GlaI | GCGC | 4 cut(s) | 201, 278, 2933, 2991 |
| GsuI | CTGGAG | 3 cut(s) | 431, 1815, 2093 |
| HaeIII | GGCC | 3 cut(s) | 921, 1969, 2374 |
| HapII | CCGG | 3 cut(s) | 291, 375, 389 |
| HgaI | GACGC | 1 cut(s) | 1788 |
| HhaI | GCGC | 4 cut(s) | 202, 279, 2934, 2992 |
| Hin1I | GRCGYC | 1 cut(s) | 222 |
| Hin6I | GCGC | 4 cut(s) | 200, 277, 2932, 2990 |
| HinP1I | GCGC | 4 cut(s) | 200, 277, 2932, 2990 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HindIII | AAGCTT | 2 cut(s) | 1289, 3218 |
| HpaII | CCGG | 3 cut(s) | 291, 375, 389 |
| HphI | GGTGA | 6 cut(s) | 25, 68, 95, 184, 1922, 2588 |
| Hpy166II | GTNNAC | 4 cut(s) | 247, 1551, 1913, 2482 |
| Hpy8I | GTNNAC | 4 cut(s) | 247, 1551, 1913, 2482 |
| Hpy99I | CGWCG | 2 cut(s) | 224, 248 |
| HpyAV | CCTTC | 7 cut(s) | 79, 83, 340, 1523, 1764, 2739, 3038 |
| HpyCH4III | ACNGT | 5 cut(s) | 183, 1555, 1788, 2614, 2882 |
| HpyCH4IV | ACGT | 3 cut(s) | 222, 1299, 1915 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1118, 1312, 1589, 1772, 2074, 2931 |
| HpySE526I | ACGT | 3 cut(s) | 222, 1299, 1915 |
| Hsp92I | GRCGYC | 1 cut(s) | 222 |
| HspAI | GCGC | 4 cut(s) | 200, 277, 2932, 2990 |
| KflI | GGGWCCC | 1 cut(s) | 927 |
| Kpn2I | TCCGGA | 1 cut(s) | 388 |
| Ksp22I | TGATCA | 1 cut(s) | 2209 |
| Kzo9I | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| LmnI | GCTCC | 8 cut(s) | 271, 316, 841, 1796, 1952, 2074, 2684, 3236 |
| Lsp1109I | GCAGC | 9 cut(s) | 306, 358, 1570, 1598, 1601, 1624, 1649, 2129, 2551 |
| LweI | GCATC | 8 cut(s) | 253, 430, 1331, 1357, 1477, 2077, 2086, 2514 |
| MaeI | CTAG | 4 cut(s) | 56, 1196, 2184, 2961 |
| MaeII | ACGT | 3 cut(s) | 222, 1299, 1915 |
| MaeIII | GTNAC | 4 cut(s) | 1139, 2594, 3050, 3066 |
| MalI | GATC | 9 cut(s) | 150, 191, 527, 642, 916, 2109, 2211, 2282, 2454 |
| MbiI | CCGCTC | 1 cut(s) | 1420 |
| MboI | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| MfeI | CAATTG | 1 cut(s) | 2023 |
| MflI | RGATCY | 4 cut(s) | 525, 914, 2107, 2280 |
| MlyI | GAGTC | 7 cut(s) | 392, 1073, 1571, 1967, 2054, 2621, 3274 |
| MmeI | TCCRAC | 4 cut(s) | 243, 892, 1383, 2662 |
| MroI | TCCGGA | 1 cut(s) | 388 |
| MslI | CAYNNNNRTG | 4 cut(s) | 448, 1556, 2051, 2811 |
| MspA1I | CMGCKG | 2 cut(s) | 1615, 3158 |
| MspI | CCGG | 3 cut(s) | 291, 375, 389 |
| MspR9I | CCNGG | 3 cut(s) | 1202, 1598, 2887 |
| MunI | CAATTG | 1 cut(s) | 2023 |
| MvaI | CCWGG | 3 cut(s) | 1202, 1598, 2887 |
| MvnI | CGCG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1118, 1312, 1589, 1772, 2074, 2931 |
| NcoI | CCATGG | 2 cut(s) | 636, 2505 |
| NdeII | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| NheI | GCTAGC | 1 cut(s) | 1195 |
| NmuCI | GTSAC | 2 cut(s) | 1139, 2594 |
| NspI | RCATGY | 1 cut(s) | 1041 |
| NspV | TTCGAA | 1 cut(s) | 660 |
| OliI | CACNNNNGTG | 1 cut(s) | 448 |
| PaeI | GCATGC | 1 cut(s) | 1041 |
| PagI | TCATGA | 2 cut(s) | 592, 1828 |
| PaqCI | CACCTGC | 1 cut(s) | 1379 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 930 |
| PleI | GAGTC | 7 cut(s) | 391, 1073, 1570, 1967, 2054, 2621, 3273 |
| PpsI | GAGTC | 7 cut(s) | 391, 1073, 1570, 1967, 2054, 2621, 3273 |
| PpuMI | RGGWCCY | 2 cut(s) | 927, 2648 |
| Psp5II | RGGWCCY | 2 cut(s) | 927, 2648 |
| Psp6I | CCWGG | 3 cut(s) | 1200, 1596, 2885 |
| PspGI | CCWGG | 3 cut(s) | 1200, 1596, 2885 |
| PspPI | GGNCC | 9 cut(s) | 682, 927, 1967, 2319, 2363, 2372, 2648, 2775, 3245 |
| PspPPI | RGGWCCY | 2 cut(s) | 927, 2648 |
| PstI | CTGCAG | 3 cut(s) | 357, 1588, 2119 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2618, 2886 |
| PsuI | RGATCY | 4 cut(s) | 525, 914, 2107, 2280 |
| PvuII | CAGCTG | 2 cut(s) | 1615, 3158 |
| RsaI | GTAC | 5 cut(s) | 459, 1233, 2021, 2558, 3099 |
| RsaNI | GTAC | 5 cut(s) | 458, 1232, 2020, 2557, 3098 |
| RseI | CAYNNNNRTG | 4 cut(s) | 448, 1556, 2051, 2811 |
| SalI | GTCGAC | 1 cut(s) | 245 |
| Sau3AI | GATC | 9 cut(s) | 148, 189, 525, 640, 914, 2107, 2209, 2280, 2452 |
| Sau96I | GGNCC | 9 cut(s) | 682, 927, 1967, 2319, 2363, 2372, 2648, 2775, 3245 |
| ScaI | AGTACT | 1 cut(s) | 459 |
| SchI | GAGTC | 7 cut(s) | 392, 1073, 1571, 1967, 2054, 2621, 3274 |
| ScrFI | CCNGG | 3 cut(s) | 1202, 1598, 2887 |
| SfaNI | GCATC | 8 cut(s) | 253, 430, 1331, 1357, 1477, 2077, 2086, 2514 |
| SfcI | CTRYAG | 4 cut(s) | 353, 1491, 1584, 2115 |
| SfuI | TTCGAA | 1 cut(s) | 660 |
| SinI | GGWCC | 7 cut(s) | 682, 927, 2319, 2363, 2648, 2775, 3245 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 448, 1556, 2051, 2811 |
| SmlI | CTYRAG | 2 cut(s) | 1355, 2629 |
| SmoI | CTYRAG | 2 cut(s) | 1355, 2629 |
| SphI | GCATGC | 1 cut(s) | 1041 |
| SsiI | CCGC | 6 cut(s) | 195, 198, 254, 1313, 1418, 2770 |
| SspI | AATATT | 2 cut(s) | 796, 2970 |
| SspMI | CTAG | 4 cut(s) | 56, 1196, 2184, 2961 |
| StyD4I | CCNGG | 3 cut(s) | 1200, 1596, 2885 |
| StyI | CCWWGG | 2 cut(s) | 636, 2505 |
| TaaI | ACNGT | 5 cut(s) | 183, 1555, 1788, 2614, 2882 |
| TaiI | ACGT | 3 cut(s) | 225, 1302, 1918 |
| TaqI | TCGA | 8 cut(s) | 24, 147, 177, 246, 261, 660, 933, 1685 |
| TatI | WGTACW | 4 cut(s) | 457, 2019, 2556, 3097 |
| TauI | GCSGC | 2 cut(s) | 200, 1315 |
| TscAI | CASTG | 6 cut(s) | 304, 455, 1558, 1962, 2098, 2785 |
| TseFI | GTSAC | 2 cut(s) | 1139, 2594 |
| TseI | GCWGC | 9 cut(s) | 294, 371, 1583, 1586, 1589, 1612, 1662, 2117, 2564 |
| Tsp45I | GTSAC | 2 cut(s) | 1139, 2594 |
| TspGWI | ACGGA | 3 cut(s) | 2311, 2720, 3091 |
| TspRI | CASTG | 6 cut(s) | 304, 455, 1558, 1962, 2098, 2785 |
| VpaK11BI | GGWCC | 7 cut(s) | 682, 927, 2319, 2363, 2648, 2775, 3245 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2426 |
| XapI | RAATTY | 6 cut(s) | 398, 745, 1058, 2387, 2510, 3029 |
| XceI | RCATGY | 1 cut(s) | 1041 |
| XmiI | GTMKAC | 1 cut(s) | 246 |
| XspI | CTAG | 4 cut(s) | 56, 1196, 2184, 2961 |
| ZraI | GACGTC | 1 cut(s) | 223 |
| ZrmI | AGTACT | 1 cut(s) | 459 |