Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Reverse (-)

29744198 .. 29746093

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1200900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCGAACACGCTACCTTAACATCGACTACTTCATCGCCACTCCAATCCAAGCCCTGGAATCCCTAACCTTCCTCCACCTCCCGATTCTTCCCCTCCCTCCCTCCAATCTCTCCACCGCCTTCGACGGCCTCCACCACCTCCGCTTCCACTCCGAACTCGAAGTCTCGCTCCAAATCGAGCAATTTCCGATCGCGGCCGCTCTCACCAAGTTCTTCTCCGATGTTCTTCCTCAGAATATCGTTCTCGATGTCGCGGACTTCGACGCCGGCGATCCGTCTCCGAGTTCTAGAAGTTTCGATTCCGGCAGCCGTGAGCTGCGGTTTTCGGAGACGAAAGCCGAGGACCTCAAAAACGAAAAGGGGTTGGAGGATCAGATAACTTTTGGCTCCGAGACTCTGGAGACTGCATTCCGAAAAAAGGATAATGGCAGAAGAGATGCAGAGAAAGATGCACACCCATTGGAAGTGCTCCGATTAGAAACACCAGAGTTGGATGTATTCTTGGAAAATGCTTACATTTATGAGAAAGAGGAGCTCCCGTTTCTTTCAGAAGAAGTTCCAGAAACTGAGAATAATTTAGTATTTCATGAGTCAGTTCATACAGTTGAAGACTTTCATTCAGAGTATTCCACGGATCAAAAGGCTTATATGTTTGAAGATGATTGTTCTTACAAGGACCAAATGCACTTCTATCAGAATTTCCCTGTATTAGAACCAAATGAGATAACTCTGCCAACTTTCATGGGTTTGTCTGTAGGGGGTGAACTTTCTTCTGTATATGAAAATATTGAGCCCCAGCAATGGGATAAAAAAGATAAGCTGAATGGCGAGGAGCTCTTGGGTACAAAGGAATACGGGATATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.03

Weight (kDa)

4.46

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	2 cut(s)	194, 254
AciI	CCGC	6 cut(s)	117, 142, 194, 198, 254, 319
AclWI	GGATC	3 cut(s)	266, 378, 642
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	697
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	844
AfiI	CCNNNNNNNGG	4 cut(s)	55, 418, 801, 802
AgsI	TTSAA	2 cut(s)	608, 656
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	316, 535, 820, 835
AluI	AGCT	4 cut(s)	316, 535, 820, 835
Alw21I	GWGCWC	3 cut(s)	471, 537, 837
Alw26I	GTCTC	5 cut(s)	169, 282, 323, 386, 395
AlwI	GGATC	3 cut(s)	266, 378, 642
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	127, 195
ApeKI	GCWGC	2 cut(s)	306, 316
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	2 cut(s)	555, 612
AspS9I	GGNCC	2 cut(s)	343, 676
AsuHPI	GGTGA	2 cut(s)	196, 773
AvaII	GGWCC	2 cut(s)	343, 676
BanII	GRGCYC	3 cut(s)	537, 795, 837
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	3 cut(s)	471, 537, 837
BbvI	GCAGC	2 cut(s)	303, 318
BceAI	ACGGC	2 cut(s)	142, 294
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	5 cut(s)	169, 282, 323, 386, 395
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	753
BisI	GCNGC	4 cut(s)	195, 198, 307, 317
BlsI	GCNGC	4 cut(s)	196, 199, 308, 318
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	343, 676
BmgT120I	GGNCC	2 cut(s)	343, 676
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	427, 439
BpiI	GAAGAC	1 cut(s)	615
BpmI	CTGGAG	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	54, 339, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 418, 801, 802
Bse118I	RCCGGY	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	806
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	54, 339, 630
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	4 cut(s)	55, 418, 801, 802
BseMI	GCAATG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	245, 558
BseRI	GAGGAG	2 cut(s)	545, 845
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	303, 318
BseYI	CCCAGC	1 cut(s)	795
Bsh1236I	CGCG	2 cut(s)	194, 254
Bsh1285I	CGRYCG	2 cut(s)	192, 198
BshFI	GGCC	2 cut(s)	129, 197
BsiEI	CGRYCG	2 cut(s)	192, 198
BsiHKAI	GWGCWC	3 cut(s)	471, 537, 837
BsiSI	CCGG	2 cut(s)	267, 303
BslI	CCNNNNNNNGG	4 cut(s)	55, 418, 801, 802
BsmAI	GTCTC	5 cut(s)	169, 282, 323, 386, 395
BsmBI	CGTCTC	2 cut(s)	282, 323
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	129, 197
Bsp1286I	GDGCHC	4 cut(s)	471, 537, 795, 837
Bsp143I	GATC	4 cut(s)	189, 271, 370, 634
BspACI	CCGC	6 cut(s)	117, 142, 194, 198, 254, 319
BspANI	GGCC	2 cut(s)	129, 197
BspCNI	CTCAG	2 cut(s)	244, 559
BspFNI	CGCG	2 cut(s)	194, 254
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	3 cut(s)	266, 378, 642
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	806
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	54, 339, 630
BssMI	GATC	4 cut(s)	189, 271, 370, 634
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	604
Bst6I	CTCTTC	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	231, 567
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	2 cut(s)	194, 254
BstKTI	GATC	4 cut(s)	192, 274, 373, 637
BstMAI	GTCTC	5 cut(s)	169, 282, 323, 386, 395
BstMBI	GATC	4 cut(s)	189, 271, 370, 634
BstMCI	CGRYCG	2 cut(s)	192, 198
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	2 cut(s)	194, 254
BstV1I	GCAGC	2 cut(s)	303, 318
BstV2I	GAAGAC	1 cut(s)	615
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	129, 197
BtgI	CCRYGG	1 cut(s)	630
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	586
CciNI	GCGGCCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	343, 676
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	843
CviAII	CATG	2 cut(s)	587, 742
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	2 cut(s)	231, 567
DpnI	GATC	4 cut(s)	191, 273, 372, 636
DpnII	GATC	4 cut(s)	189, 271, 370, 634
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Ecl136II	GAGCTC	2 cut(s)	535, 835
EclXI	CGGCCG	1 cut(s)	195
Eco24I	GRGCYC	3 cut(s)	537, 795, 837
Eco32I	GATATC	1 cut(s)	861
Eco47I	GGWCC	2 cut(s)	343, 676
Eco52I	CGGCCG	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	535, 835
EcoICRI	GAGCTC	2 cut(s)	535, 835
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	861
EcoT38I	GRGCYC	3 cut(s)	537, 795, 837
Esp3I	CGTCTC	2 cut(s)	282, 323
FaeI	CATG	2 cut(s)	590, 745
FaiI	YATR	9 cut(s)	522, 588, 600, 648, 650, 743, 778, 780, 865
FatI	CATG	2 cut(s)	586, 741
Fnu4HI	GCNGC	4 cut(s)	195, 198, 307, 317
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	3 cut(s)	537, 795, 837
Fsp4HI	GCNGC	4 cut(s)	195, 198, 307, 317
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	4 cut(s)	195, 198, 307, 317
GsaI	CCCAGC	1 cut(s)	799
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	129, 197
HapII	CCGG	2 cut(s)	267, 303
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	590, 745
HinfI	GANTC	5 cut(s)	59, 85, 299, 394, 590
HpaII	CCGG	2 cut(s)	267, 303
HphI	GGTGA	2 cut(s)	196, 773
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188III	TCNNGA	6 cut(s)	82, 245, 288, 398, 560, 587
Hpy8I	GTNNAC	1 cut(s)	764
Hpy99I	CGWCG	2 cut(s)	128, 266
HpyAV	CCTTC	2 cut(s)	79, 130
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	407, 440, 452, 685
HpyF3I	CTNAG	2 cut(s)	231, 567
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	590, 745
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	189, 271, 370, 634
LmnI	GCTCC	6 cut(s)	174, 392, 474, 532, 540, 832
LpnPI	CCDG	9 cut(s)	41, 68, 280, 316, 383, 498, 573, 717, 809
Lsp1109I	GCAGC	2 cut(s)	303, 318
LweI	GCATC	2 cut(s)	427, 439
MaeI	CTAG	1 cut(s)	288
MalI	GATC	4 cut(s)	191, 273, 372, 636
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	4 cut(s)	189, 271, 370, 634
MboII	GAAGA	8 cut(s)	80, 205, 218, 444, 563, 620, 668, 762
MhlI	GDGCHC	4 cut(s)	471, 537, 795, 837
MluCI	AATT	3 cut(s)	182, 574, 697
MlyI	GAGTC	2 cut(s)	388, 599
MmeI	TCCRAC	2 cut(s)	345, 471
MreI	CGCCGGCG	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	266
MroXI	GAANNNNTTC	2 cut(s)	555, 612
MseI	TTAA	1 cut(s)	18
MspI	CCGG	2 cut(s)	267, 303
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	2 cut(s)	194, 254
NaeI	GCCGGC	1 cut(s)	268
NdeII	GATC	4 cut(s)	189, 271, 370, 634
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	590, 745
NlaIV	GGNNCC	1 cut(s)	388
NmeAIII	GCCGAG	1 cut(s)	364
NotI	GCGGCCGC	1 cut(s)	195
PagI	TCATGA	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 267
PctI	GAATGC	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	268
PdmI	GAANNNNTTC	2 cut(s)	555, 612
PfeI	GAWTC	3 cut(s)	59, 85, 299
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	196, 199, 308, 318
Ple19I	CGATCG	1 cut(s)	192
PleI	GAGTC	2 cut(s)	388, 598
PpsI	GAGTC	2 cut(s)	388, 598
PpuMI	RGGWCCY	1 cut(s)	343
Psp124BI	GAGCTC	2 cut(s)	537, 837
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	343, 676
PspPPI	RGGWCCY	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	566
PvuI	CGATCG	1 cut(s)	192
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
SacI	GAGCTC	2 cut(s)	537, 837
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	4 cut(s)	195, 198, 307, 317
Sau3AI	GATC	4 cut(s)	189, 271, 370, 634
Sau96I	GGNCC	2 cut(s)	343, 676
SchI	GAGTC	2 cut(s)	388, 599
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	4 cut(s)	471, 537, 795, 837
SetI	ASST	9 cut(s)	18, 71, 81, 141, 318, 348, 537, 822, 837
SfaNI	GCATC	2 cut(s)	427, 439
SfcI	CTRYAG	1 cut(s)	753
SgrAI	CRCCGGYG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	343, 676
Sse9I	AATT	3 cut(s)	182, 574, 697
SsiI	CCGC	6 cut(s)	117, 142, 194, 198, 254, 319
SspI	AATATT	1 cut(s)	787
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	2 cut(s)	537, 837
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	604
TaqI	TCGA	7 cut(s)	24, 123, 159, 177, 246, 261, 297
TasI	AATT	3 cut(s)	182, 574, 697
TauI	GCSGC	2 cut(s)	197, 200
TfiI	GAWTC	3 cut(s)	59, 85, 299
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	2 cut(s)	306, 316
TspDTI	ATGAA	6 cut(s)	22, 575, 587, 605, 730, 795
TspGWI	ACGGA	2 cut(s)	264, 647
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	343, 676
XapI	RAATTY	1 cut(s)	697
XbaI	TCTAGA	1 cut(s)	287
XmnI	GAANNNNTTC	2 cut(s)	555, 612
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.