Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006650

Physical Location & Seq

Genomic Coordinates Forward (+)

19757280 .. 19782935

Gene Structure 25656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007673

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAGTCGTGGGTGGTGTTAATACTAGTTGGAAAAATGATAACAAAGGTGCTATAGATGGATTCAGCCCAGATGAAAGCAAGGAATTTCAGGAGTTGCTTTATGATGGCACTGATATTCATACTGGTTATATTGGAGATGCTTCAATAGACTTGGTAGGCGGCAATTTTCCCCATCCAAAATTTAAACAGCATATAGATAAAAAGGTTGCTGACAGGGCTTCATTGCTTTTCAAGTCTATGTCACAATTCAATGATATTGACTTTCTCTTGAATCCTCAGATGACCGTTACCGATGGAAATAGGGACTGTGCAATTGTGGCAGTTGATAAGATTGTTTCTTGTATCAAGGCCAAACGATCTCATTCTATATGTGCTCAAGCTGAGAATATAAATGAGCAGGAGTCAGAGGAACTCTTGCACGGTTTTCCTTGTCAAAAAGAGTATGATATGAGACCTAAAGAAGATTCAGACATTGAAATTGAGGTTAGTAATGTGGCTCATGAAAGTGGGTCCAAATTGCTCGTAGTGTTTGAGCCGCCCAAACAGGAAGCTGTTGAGAAACTTGTTTCTATGGTCAAAGGCTTCATCTCCGATGGGGACCATACTTGTCCTGATTGTAACATTGAGCAGCAGATAACGATGACAGATGAATTTGACAAAGAAAAATATGATAGAGATACTAGTATAACTGTGGAGTTGTCAAATGAAAGCTGCAATGATTCTCAAGATATTTGTGGTATTGCTAGACTTGTTCTTGGTTCGGCGAGTTCTGTTGGTGCAATGTACAGAGCTGGGGCGGATGATGCTATTTTCAATATAAACAATGTTATGGTATCATGGGTTCCGCATATGAATAGACTGGAATATGAATCTAAAATACTAAAGTTCCTAGCACCCAGTAATCAGTTCACCCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005911 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0030054 GO:0034641 GO:0035825 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0046483 GO:0048285 GO:0051304 GO:0051307 GO:0051321 GO:0055044 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.13

Weight (kDa)

4.63

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52290
fragaria_vesca	FvH4_7g29470 FvH4_7g29470
malus_domestica	MD01G1200800.v1.1 MD01G1200900.v1.1 MD07G1268700.v1.1
prunus_persica	Prupe.2G294300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0377251
rosa_laevigata	RLG00000007673 RLG00000026528 RLG00000026529 RLG00000026531 RLG00000035471
rosa_multiflora	Rmu_sc0000689.1_g000011 Rmu_sc0009231.1_g000001 Rmu_sc0017163.1_g000002 Rmu_sc0022060.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281340
rosa_rugosa	Rorug01G0402700 Rorug01G0402700
rosa_samantha	Rh1AG419900 Rh1BG378900 Rh1CG392900 Rh1DG409500 Rh1DG409900
rosa_wichuraiana	Rw1G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	162, 539, 800, 848
AcsI	RAATTY	3 cut(s)	86, 182, 653
AfaI	GTAC	1 cut(s)	788
AgsI	TTSAA	6 cut(s)	147, 235, 253, 274, 479, 817
AhlI	ACTAGT	2 cut(s)	26, 683
AluBI	AGCT	5 cut(s)	383, 554, 714, 794, 920
AluI	AGCT	5 cut(s)	383, 554, 714, 794, 920
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	448
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	631, 714
ApoI	RAATTY	3 cut(s)	86, 182, 653
AspS9I	GGNCC	2 cut(s)	513, 601
AsuHPI	GGTGA	1 cut(s)	904
AvaII	GGWCC	2 cut(s)	513, 601
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	643, 701
BccI	CCATC	5 cut(s)	53, 101, 183, 290, 590
BcoDI	GTCTC	1 cut(s)	448
BcuI	ACTAGT	2 cut(s)	26, 683
BfaI	CTAG	4 cut(s)	27, 684, 747, 893
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	4 cut(s)	163, 539, 632, 715
BlsI	GCNGC	4 cut(s)	164, 540, 633, 716
Bme18I	GGWCC	2 cut(s)	513, 601
BmgT120I	GGNCC	2 cut(s)	513, 601
BmiI	GGNNCC	3 cut(s)	514, 602, 846
BmrI	ACTGGG	1 cut(s)	894
BmsI	GCATC	2 cut(s)	130, 796
BmuI	ACTGGG	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	363, 711
BsaI	GGTCTC	1 cut(s)	448
Bse1I	ACTGG	3 cut(s)	130, 867, 900
Bse3DI	GCAATG	3 cut(s)	224, 724, 789
BseGI	GGATG	2 cut(s)	175, 808
BseMI	GCAATG	3 cut(s)	224, 724, 789
BseMII	CTCAG	2 cut(s)	293, 375
BseNI	ACTGG	3 cut(s)	130, 867, 900
BseXI	GCAGC	2 cut(s)	643, 701
BseYI	CCCAGC	1 cut(s)	794
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	320, 614
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	2 cut(s)	320, 614
BsnI	GGCC	1 cut(s)	353
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	1 cut(s)	359
BspACI	CCGC	4 cut(s)	162, 539, 800, 848
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	292, 376
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	514, 602, 846
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	3 cut(s)	224, 724, 789
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	3 cut(s)	130, 867, 900
BssMI	GATC	1 cut(s)	359
Bst4CI	ACNGT	4 cut(s)	289, 311, 425, 694
BstAUI	TGTACA	1 cut(s)	786
BstDEI	CTNAG	2 cut(s)	279, 384
BstF5I	GGATG	2 cut(s)	175, 808
BstKTI	GATC	1 cut(s)	362
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 320, 806
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	643, 701
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	175, 808
BtsIMutI	CAGTG	1 cut(s)	111
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	513, 601
Csp6I	GTAC	1 cut(s)	787
CviAII	CATG	2 cut(s)	503, 840
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	2 cut(s)	279, 384
DpnI	GATC	1 cut(s)	361
DpnII	GATC	1 cut(s)	359
DraI	TTTAAA	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	815
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	513, 601
FaeI	CATG	2 cut(s)	506, 843
FaqI	GGGAC	2 cut(s)	320, 614
FatI	CATG	2 cut(s)	502, 839
FauNDI	CATATG	1 cut(s)	852
Fnu4HI	GCNGC	4 cut(s)	163, 539, 632, 715
FokI	GGATG	2 cut(s)	162, 815
Fsp4HI	GCNGC	4 cut(s)	163, 539, 632, 715
FspBI	CTAG	4 cut(s)	27, 684, 747, 893
GluI	GCNGC	4 cut(s)	163, 539, 632, 715
GsaI	CCCAGC	1 cut(s)	798
HaeIII	GGCC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	506, 843
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	6 cut(s)	63, 274, 404, 467, 722, 872
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	1 cut(s)	912
Hpy188I	TCNGA	4 cut(s)	282, 409, 472, 595
Hpy188III	TCNNGA	5 cut(s)	92, 271, 503, 614, 728
Hpy8I	GTNNAC	1 cut(s)	912
HpyCH4III	ACNGT	4 cut(s)	289, 311, 425, 694
HpyCH4V	TGCA	4 cut(s)	314, 421, 717, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 320, 806
HpyF3I	CTNAG	2 cut(s)	279, 384
Hsp92II	CATG	2 cut(s)	506, 843
Kzo9I	GATC	1 cut(s)	359
Lsp1109I	GCAGC	2 cut(s)	643, 701
LweI	GCATC	2 cut(s)	130, 796
MaeI	CTAG	4 cut(s)	27, 684, 747, 893
MaeIII	GTNAC	3 cut(s)	243, 289, 620
MalI	GATC	1 cut(s)	361
MboI	GATC	1 cut(s)	359
MboII	GAAGA	1 cut(s)	476
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	8 cut(s)	86, 166, 182, 248, 315, 480, 518, 653
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	11
MnlI	CCTC	3 cut(s)	288, 403, 478
MseI	TTAA	3 cut(s)	21, 186, 922
MslI	CAYNNNNRTG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	218, 320, 806
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	506, 843
NlaIV	GGNNCC	3 cut(s)	514, 602, 846
NmuCI	GTSAC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	502
PfeI	GAWTC	5 cut(s)	63, 274, 467, 722, 872
PkrI	GCNGC	4 cut(s)	164, 540, 633, 716
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	794
PspN4I	GGNNCC	3 cut(s)	514, 602, 846
PspPI	GGNCC	2 cut(s)	513, 601
PsrI	GAACNNNNNNTAC	2 cut(s)	828, 860
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	21, 186, 922
SatI	GCNGC	4 cut(s)	163, 539, 632, 715
Sau3AI	GATC	1 cut(s)	359
Sau96I	GGNCC	2 cut(s)	513, 601
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	9 cut(s)	52, 210, 385, 460, 489, 556, 716, 796, 922
SfaNI	GCATC	2 cut(s)	130, 796
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	2 cut(s)	513, 601
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	378, 726
SmoI	CTYRAG	2 cut(s)	378, 726
SpeI	ACTAGT	2 cut(s)	26, 683
Sse9I	AATT	8 cut(s)	86, 166, 182, 248, 315, 480, 518, 653
SsiI	CCGC	4 cut(s)	162, 539, 800, 848
SspMI	CTAG	4 cut(s)	27, 684, 747, 893
TaaI	ACNGT	4 cut(s)	289, 311, 425, 694
TasI	AATT	8 cut(s)	86, 166, 182, 248, 315, 480, 518, 653
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	2 cut(s)	165, 541
TfiI	GAWTC	5 cut(s)	63, 274, 467, 722, 872
Tru1I	TTAA	3 cut(s)	21, 186, 922
Tru9I	TTAA	3 cut(s)	21, 186, 922
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	2 cut(s)	631, 714
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	9 cut(s)	90, 110, 213, 519, 577, 666, 723, 869, 885
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	513, 601
XapI	RAATTY	3 cut(s)	86, 182, 653
XspI	CTAG	4 cut(s)	27, 684, 747, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.