AT5G52420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005000
Physical Location & Seq
Forward (+)
21281569 .. 21282806
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52420.1

Sequence Viewer

Length: 729 bp
ATGTCTGGAGGTGTCGGTCCAACGTACAACGACATAACCTTACCCAAAGAAGAAGAAGAAGAACATCAAACCCAATCCACCTCAACAGTATCATCCACCGGAAAACCCGCCGGATTCTTCTCATTCCGACAACTAAACATCCTCGCAATAATCATCGTTCTCTCCGCAAGTGGTCTCGTAACAATCCAAGATTTCATATTCACGATCCTCACTCTCATCTACTTCTTCTTCCTCTCGAAACTTATCTTCCCACCACACAACAATCCAAACCGTGACGCTCCTCTCACAAGCTCCACAAACAAAATCTTCCGTATCTATGTTACAGCGGCGGGGATCGTCGGGCTTATCATTCCGATCTGTTACATCTTCGAAGGAATCGTTGAGGATGATAAGAACGGTGTTAGCGCAGCTGCACCGCACGTGTTTCTTTTAGCGAGTCAGATTTTTATGGAAGGATTAGCGACCATGTTTGGCTTCTCTGCTCCGGCGAGGATTCTTGTTCCGATTGTTTACAACGCCAGGAGGGTTTTGACTCTTGTGGAGTGGATTATGAGTGAGTTCTCGAGGGAGGATGTGACGGGGACGGTTTCTGCGCGGCGGATGTATGCCGGGAAAGTTTTGGCGGCGGCTAATTTAGGGATTTGGTCGTTTAATCTCTTTGGTGTTTTGATTCCGGTTTATCTACCCAGAGCGTTTAAGAGGTATTACGGTTCTGATAAGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.74

Weight (kDa)

6.31

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 40 - 236 9.3e-79 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 595
AciI CCGC 9 cut(s) 108, 165, 326, 329, 416, 595, 598, 623, 626
AclWI GGATC 2 cut(s) 199, 341
AcvI CACGTG 1 cut(s) 421
AfaI GTAC 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 420
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 2 cut(s) 291, 410
AluI AGCT 2 cut(s) 291, 410
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 2 cut(s) 199, 341
Ama87I CYCGRG 1 cut(s) 562
ApeKI GCWGC 2 cut(s) 407, 410
AspLEI GCGC 2 cut(s) 407, 595
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 610
AsuII TTCGAA 1 cut(s) 369
AvaI CYCGRG 1 cut(s) 562
AvaII GGWCC 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 421
BbvI GCAGC 2 cut(s) 397, 419
BciT130I CCWGG 1 cut(s) 520
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 179
BisI GCNGC 6 cut(s) 327, 408, 411, 596, 624, 627
BlsI GCNGC 6 cut(s) 328, 409, 412, 597, 625, 628
Bme1390I CCNGG 2 cut(s) 520, 610
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 520, 610
BpmI CTGGAG 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 610
BsaAI YACGTR 1 cut(s) 421
BsaI GGTCTC 1 cut(s) 179
BsaWI WCCGGW 2 cut(s) 98, 673
BseBI CCWGG 1 cut(s) 520
BseGI GGATG 5 cut(s) 92, 138, 391, 577, 606
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 397, 419
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 5 cut(s) 99, 111, 485, 609, 674
BslFI GGGAC 1 cut(s) 595
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 595
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 562
Bsp119I TTCGAA 1 cut(s) 369
Bsp143I GATC 3 cut(s) 204, 333, 354
BspACI CCGC 9 cut(s) 108, 165, 326, 329, 416, 595, 598, 623, 626
BspFNI CGCG 1 cut(s) 595
BspPI GGATC 2 cut(s) 199, 341
BspT104I TTCGAA 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 179
BssMI GATC 3 cut(s) 204, 333, 354
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 5 cut(s) 88, 272, 398, 586, 710
BstBAI YACGTR 1 cut(s) 421
BstBI TTCGAA 1 cut(s) 369
BstF5I GGATG 5 cut(s) 92, 138, 391, 577, 606
BstFNI CGCG 1 cut(s) 595
BstHHI GCGC 2 cut(s) 407, 595
BstKTI GATC 3 cut(s) 207, 336, 357
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 204, 333, 354
BstNI CCWGG 1 cut(s) 520
BstSCI CCNGG 2 cut(s) 518, 608
BstUI CGCG 1 cut(s) 595
BstV1I GCAGC 2 cut(s) 397, 419
BtsCI GGATG 5 cut(s) 92, 138, 391, 577, 606
CfoI GCGC 2 cut(s) 407, 595
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 466
CviJI RGCY 5 cut(s) 291, 343, 410, 474, 629
CviKI_1 RGCY 5 cut(s) 291, 343, 410, 474, 629
CviQI GTAC 1 cut(s) 25
DpnI GATC 3 cut(s) 206, 335, 356
DpnII GATC 3 cut(s) 204, 333, 354
EciI GGCGGA 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 17
Eco72I CACGTG 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 518
FaeI CATG 1 cut(s) 469
FaiI YATR 7 cut(s) 35, 197, 318, 449, 467, 551, 606
FaqI GGGAC 1 cut(s) 595
FatI CATG 1 cut(s) 465
FauI CCCGC 2 cut(s) 115, 322
Fnu4HI GCNGC 6 cut(s) 327, 408, 411, 596, 624, 627
FokI GGATG 5 cut(s) 79, 125, 398, 584, 613
Fsp4HI GCNGC 6 cut(s) 327, 408, 411, 596, 624, 627
GlaI GCGC 2 cut(s) 406, 594
GluI GCNGC 6 cut(s) 327, 408, 411, 596, 624, 627
GsuI CTGGAG 1 cut(s) 27
HapII CCGG 5 cut(s) 99, 111, 485, 609, 674
HgaI GACGC 1 cut(s) 284
HhaI GCGC 2 cut(s) 407, 595
Hin1II CATG 1 cut(s) 469
Hin6I GCGC 2 cut(s) 405, 593
HinP1I GCGC 2 cut(s) 405, 593
HinfI GANTC 6 cut(s) 114, 375, 436, 493, 532, 670
HpaII CCGG 5 cut(s) 99, 111, 485, 609, 674
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 5 cut(s) 128, 354, 441, 504, 715
Hpy188III TCNNGA 4 cut(s) 6, 202, 235, 562
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 365, 446
HpyCH4III ACNGT 5 cut(s) 88, 272, 398, 586, 710
HpyCH4IV ACGT 2 cut(s) 23, 420
HpyCH4V TGCA 1 cut(s) 413
HpySE526I ACGT 2 cut(s) 23, 420
Hsp92II CATG 1 cut(s) 469
HspAI GCGC 2 cut(s) 405, 593
Kzo9I GATC 3 cut(s) 204, 333, 354
LmnI GCTCC 3 cut(s) 283, 296, 487
LpnPI CCDG 8 cut(s) 112, 124, 498, 505, 532, 622, 687, 700
Lsp1109I GCAGC 2 cut(s) 397, 419
MaeII ACGT 2 cut(s) 23, 420
MaeIII GTNAC 5 cut(s) 178, 272, 319, 359, 574
MalI GATC 3 cut(s) 206, 335, 356
MboI GATC 3 cut(s) 204, 333, 354
MluCI AATT 1 cut(s) 631
MlyI GAGTC 2 cut(s) 445, 526
MmeI TCCRAC 2 cut(s) 44, 151
MseI TTAA 2 cut(s) 651, 696
MspA1I CMGCKG 2 cut(s) 326, 410
MspI CCGG 5 cut(s) 99, 111, 485, 609, 674
MspR9I CCNGG 2 cut(s) 520, 610
MvaI CCWGG 1 cut(s) 520
MvnI CGCG 1 cut(s) 595
NciI CCSGG 1 cut(s) 610
NdeII GATC 3 cut(s) 204, 333, 354
NlaIII CATG 1 cut(s) 469
NmuCI GTSAC 2 cut(s) 272, 574
NspV TTCGAA 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PfeI GAWTC 4 cut(s) 114, 375, 493, 670
PkrI GCNGC 6 cut(s) 328, 409, 412, 597, 625, 628
PleI GAGTC 2 cut(s) 444, 526
PmaCI CACGTG 1 cut(s) 421
PmlI CACGTG 1 cut(s) 421
PpsI GAGTC 2 cut(s) 444, 526
Ppu21I YACGTR 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 518
PspCI CACGTG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 518
PspPI GGNCC 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 651, 696
SatI GCNGC 6 cut(s) 327, 408, 411, 596, 624, 627
Sau3AI GATC 3 cut(s) 204, 333, 354
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 445, 526
ScrFI CCNGG 2 cut(s) 520, 610
SetI ASST 8 cut(s) 13, 26, 41, 83, 293, 412, 423, 704
Sfr274I CTCGAG 1 cut(s) 562
SfuI TTCGAA 1 cut(s) 369
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 562
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 1 cut(s) 631
SsiI CCGC 9 cut(s) 108, 165, 326, 329, 416, 595, 598, 623, 626
StyD4I CCNGG 2 cut(s) 518, 608
TaaI ACNGT 5 cut(s) 88, 272, 398, 586, 710
TaiI ACGT 2 cut(s) 26, 423
TaqI TCGA 3 cut(s) 236, 369, 563
TaqII GACCGA 1 cut(s) 5
TasI AATT 1 cut(s) 631
TauI GCSGC 4 cut(s) 329, 598, 626, 629
TfiI GAWTC 4 cut(s) 114, 375, 493, 670
Tru1I TTAA 2 cut(s) 651, 696
Tru9I TTAA 2 cut(s) 651, 696
TseFI GTSAC 2 cut(s) 272, 574
TseI GCWGC 2 cut(s) 407, 410
Tsp45I GTSAC 2 cut(s) 272, 574
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.