Rh1AG426900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005000
Physical Location & Seq
Reverse (-)
65536392 .. 65537293
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG426900.1

Sequence Viewer

Length: 657 bp
ATGTCGTCCGGTGATGAAGCTAGTGACGTTAACGTGCCGGAAAAAGAGTACGATGAGCTCAAACAAAGCGAGGATCCGGTTACTTCAACCTTCAAGCTCGGCCCCCAAAAGGGCCAAACCCTCAAAACTGTCCACAAATATAATTACATACCCTTTTGGCAGCTCAACTGCCTCATGGTCATGGTAGTCCTCTCAGCCAGTGGCTTGGTAGGCCCTGAAGGACTGGCTTTTGTTCTCTTCTCAATAATTTACCTCTTCTTCCTCTCGAAATTCGCTTTCCCAAAGCTCACTGATCCTTCGGAAGAGCCCCCGGTGTTCGACCCCGAAAGCTATCTAGTTCGGCTCGGCCCTCTCTTTGGTGGTTTCATAGGCATTGTGCTCCCCGTTGCGTACATTTTTGAAGGGTTTATAGAGGGAGACAAAGAAGCAATCAGGGCGGCAGCGCCTCATGTTTTCCTTCTTGCGAGCCAAGTCTTCATGGATGGAGTGGCTTTCAGTGACAGGTTTTCGACGCCAATTAGGAGAGAGTTTTCGAAAGCTGATGGTCAAGAGTATGGTGGATCTGCAAGTGAGAGGAGACTCTTTCTTGGGAGAGTACTCGCTATACTTTCAGGAAATATTATGCTGCAGCAAAAGCAGATTGAAGTTGAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.25

Weight (kDa)

4.86

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 52 - 174 2.3e-45 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 437
AclWI GGATC 4 cut(s) 68, 81, 287, 568
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 4 cut(s) 50, 392, 597, 653
AfiI CCNNNNNNNGG 3 cut(s) 109, 110, 356
AgsI TTSAA 4 cut(s) 87, 94, 401, 644
AluBI AGCT 7 cut(s) 20, 58, 97, 163, 286, 330, 539
AluI AGCT 7 cut(s) 20, 58, 97, 163, 286, 330, 539
Alw21I GWGCWC 2 cut(s) 60, 381
Alw26I GTCTC 2 cut(s) 411, 571
AlwI GGATC 4 cut(s) 68, 81, 287, 568
AoxI GGCC 4 cut(s) 100, 112, 211, 346
ApeKI GCWGC 4 cut(s) 160, 440, 625, 628
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 4 cut(s) 101, 112, 212, 347
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 533
BamHI GGATCC 1 cut(s) 73
BanII GRGCYC 2 cut(s) 60, 309
BbsI GAAGAC 1 cut(s) 466
Bbv12I GWGCWC 2 cut(s) 60, 381
BbvI GCAGC 4 cut(s) 172, 452, 612, 640
BccI CCATC 2 cut(s) 476, 536
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 2 cut(s) 411, 571
BfaI CTAG 3 cut(s) 21, 335, 655
BfmI CTRYAG 1 cut(s) 626
BfoI RGCGCY 1 cut(s) 446
BisI GCNGC 5 cut(s) 161, 438, 441, 626, 629
BlsI GCNGC 5 cut(s) 162, 439, 442, 627, 630
BmcAI AGTACT 2 cut(s) 597, 653
Bme1390I CCNGG 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 101, 112, 212, 347
BmiI GGNNCC 2 cut(s) 75, 103
BmrFI CCNGG 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 466
Bpu14I TTCGAA 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 2 cut(s) 8, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 110, 356
Bse1I ACTGG 2 cut(s) 198, 228
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 3 cut(s) 109, 110, 356
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 2 cut(s) 198, 228
BseRI GAGGAG 1 cut(s) 589
BseXI GCAGC 4 cut(s) 172, 452, 612, 640
BshFI GGCC 4 cut(s) 102, 114, 213, 348
BsiHKAI GWGCWC 2 cut(s) 60, 381
BsiSI CCGG 4 cut(s) 9, 38, 77, 311
BslI CCNNNNNNNGG 3 cut(s) 109, 110, 356
BsmAI GTCTC 2 cut(s) 411, 571
BsnI GGCC 4 cut(s) 102, 114, 213, 348
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 3 cut(s) 60, 309, 381
Bsp143I GATC 3 cut(s) 73, 292, 560
BspACI CCGC 1 cut(s) 437
BspANI GGCC 4 cut(s) 102, 114, 213, 348
BspCNI CTCAG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 75, 103
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 4 cut(s) 68, 81, 287, 568
BspQI GCTCTTC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 533
BsrI ACTGG 2 cut(s) 198, 228
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 3 cut(s) 73, 292, 560
BssNI GRCGYC 1 cut(s) 512
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 3 cut(s) 242, 260, 297
BstACI GRCGYC 1 cut(s) 512
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 3 cut(s) 76, 295, 563
BstMAI GTCTC 2 cut(s) 411, 571
BstMBI GATC 3 cut(s) 73, 292, 560
BstMWI GCNNNNNNNGC 3 cut(s) 210, 434, 634
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 626
BstV1I GCAGC 4 cut(s) 172, 452, 612, 640
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 2 cut(s) 73, 560
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 2 cut(s) 73, 560
BsuRI GGCC 4 cut(s) 102, 114, 213, 348
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 205, 288, 502
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 4 cut(s) 101, 112, 212, 347
CseI GACGC 1 cut(s) 520
Csp6I GTAC 4 cut(s) 49, 391, 596, 652
CviAII CATG 4 cut(s) 175, 181, 449, 478
CviQI GTAC 4 cut(s) 49, 391, 596, 652
DdeI CTNAG 1 cut(s) 193
DpnI GATC 3 cut(s) 75, 294, 562
DpnII GATC 3 cut(s) 73, 292, 560
Eam1104I CTCTTC 3 cut(s) 242, 260, 297
EarI CTCTTC 3 cut(s) 242, 260, 297
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 2 cut(s) 60, 309
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 212
EcoT38I GRGCYC 2 cut(s) 60, 309
FaeI CATG 4 cut(s) 178, 184, 452, 481
FatI CATG 4 cut(s) 174, 180, 448, 477
Fnu4HI GCNGC 5 cut(s) 161, 438, 441, 626, 629
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 2 cut(s) 60, 309
Fsp4HI GCNGC 5 cut(s) 161, 438, 441, 626, 629
FspBI CTAG 3 cut(s) 21, 335, 655
GlaI GCGC 1 cut(s) 444
GluI GCNGC 5 cut(s) 161, 438, 441, 626, 629
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 4 cut(s) 102, 114, 213, 348
HapII CCGG 4 cut(s) 9, 38, 77, 311
HgaI GACGC 1 cut(s) 520
HhaI GCGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 4 cut(s) 178, 184, 452, 481
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 579
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 4 cut(s) 9, 38, 77, 311
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 31, 133
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 3 cut(s) 265, 548, 612
Hpy8I GTNNAC 2 cut(s) 31, 133
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 5 cut(s) 100, 212, 306, 395, 467
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 27, 33
HpyCH4V TGCA 2 cut(s) 566, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 434, 634
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 2 cut(s) 27, 33
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 4 cut(s) 178, 184, 452, 481
HspAI GCGC 1 cut(s) 443
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 73, 292, 560
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 4 cut(s) 172, 452, 612, 640
MaeI CTAG 3 cut(s) 21, 335, 655
MaeII ACGT 2 cut(s) 27, 33
MaeIII GTNAC 3 cut(s) 23, 79, 497
MalI GATC 3 cut(s) 75, 294, 562
MboI GATC 3 cut(s) 73, 292, 560
MboII GAAGA 5 cut(s) 229, 247, 250, 314, 466
MflI RGATCY 2 cut(s) 73, 560
MhlI GDGCHC 3 cut(s) 60, 309, 381
MluCI AATT 4 cut(s) 142, 246, 269, 516
MlyI GAGTC 1 cut(s) 573
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 4 cut(s) 9, 38, 77, 311
MspR9I CCNGG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 210, 434, 634
NciI CCSGG 1 cut(s) 311
NdeII GATC 3 cut(s) 73, 292, 560
NlaIII CATG 4 cut(s) 178, 184, 452, 481
NlaIV GGNNCC 2 cut(s) 75, 103
NmeAIII GCCGAG 2 cut(s) 78, 324
NmuCI GTSAC 2 cut(s) 23, 497
NspV TTCGAA 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 297
PkrI GCNGC 5 cut(s) 162, 439, 442, 627, 630
PleI GAGTC 1 cut(s) 573
PpsI GAGTC 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 75, 103
PspPI GGNCC 4 cut(s) 101, 112, 212, 347
PstI CTGCAG 1 cut(s) 630
PsuI RGATCY 2 cut(s) 73, 560
RsaI GTAC 4 cut(s) 50, 392, 597, 653
RsaNI GTAC 4 cut(s) 49, 391, 596, 652
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 5 cut(s) 161, 438, 441, 626, 629
Sau3AI GATC 3 cut(s) 73, 292, 560
Sau96I GGNCC 4 cut(s) 101, 112, 212, 347
ScaI AGTACT 2 cut(s) 597, 653
SchI GAGTC 1 cut(s) 573
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 3 cut(s) 60, 309, 381
SfcI CTRYAG 1 cut(s) 626
SfuI TTCGAA 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 4 cut(s) 142, 246, 269, 516
SsiI CCGC 1 cut(s) 437
SspI AATATT 1 cut(s) 619
SspMI CTAG 3 cut(s) 21, 335, 655
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 30, 36
TaqI TCGA 4 cut(s) 266, 318, 509, 533
TasI AATT 4 cut(s) 142, 246, 269, 516
TatI WGTACW 2 cut(s) 595, 651
TauI GCSGC 1 cut(s) 440
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 3 cut(s) 205, 295, 502
TseFI GTSAC 2 cut(s) 23, 497
TseI GCWGC 4 cut(s) 160, 440, 625, 628
Tsp45I GTSAC 2 cut(s) 23, 497
TspDTI ATGAA 3 cut(s) 30, 355, 466
TspRI CASTG 3 cut(s) 205, 295, 502
XapI RAATTY 1 cut(s) 269
XspI CTAG 3 cut(s) 21, 335, 655
ZrmI AGTACT 2 cut(s) 597, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.