RchiOBHm_Chr1g0377831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005000
Physical Location & Seq
Forward (+)
64536407 .. 64537173
767 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60127

Sequence Viewer

Length: 699 bp
ATGTCGTCCGGTGATGAAGCTAGTGACGTTAACGTGCCGGAAAAAGAGTACGATGAGCTCAAACAAAGCGAGGATCCGGTTACTTCAACCTTCAAGCTCGGCCCCCAAAAGGGCCAAACCCTCAAAACTGTCCACAAATATAATTACATACCCTTTTGGCAGCTCAACTGCCTCATGGTCATGGTAGTCATCTCAGCCAAAATTCGCTTTCCCAAAGCCGATCCTTCGGAAGAGCCCCCGGTGTTAGACCCCGAAAGCTATCTAGTTCGGCTCGGCCCTCTCTTTGGTGGTTTCATAGGCATTGTGCTCCCCGTTGCGTACATTTTTGAAGGGTTTATAGAGGGAAACAAACAAGCAATCAGGGCGGCAGCGCCGCATGTTTTCCTTCTTGCAAGCCAAGTCTTCATGGATGGAGTGGCTTTCAGTGACAGGTTTTCGAAGCCAATTAGGGTTTTTGTGCCGGTTTTCTATAATGCCAAGAGGATTTTTACCCTTGTGGATTGGGTTAAGAGAGAGTTTTCGAAAGCTGATGGTCAAGAGTATGGTGGATCTGCAAGTGAGAGGAGACTCTTTCTTGGGAGAGTACTCGCTATAGTAAACTTGGTGTTTTGGTCCTATGATCTCTTCTTCTTCTTCTTGTTGCCTGTTTATCTTCCTACAGCTTTCAGGAAATATTATGCTGCAGCAAAAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.31

Weight (kDa)

7.74

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 60 - 226 8.7e-62 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 365, 374
AclWI GGATC 4 cut(s) 68, 81, 215, 556
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 3 cut(s) 50, 320, 585
AfiI CCNNNNNNNGG 3 cut(s) 109, 110, 284
AgsI TTSAA 3 cut(s) 87, 94, 329
AluBI AGCT 7 cut(s) 20, 58, 97, 163, 258, 527, 662
AluI AGCT 7 cut(s) 20, 58, 97, 163, 258, 527, 662
Alw21I GWGCWC 2 cut(s) 60, 309
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 4 cut(s) 68, 81, 215, 556
AoxI GGCC 3 cut(s) 100, 112, 274
ApeKI GCWGC 4 cut(s) 160, 368, 680, 683
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 4 cut(s) 101, 112, 275, 612
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 23
AsuII TTCGAA 2 cut(s) 437, 521
AvaII GGWCC 1 cut(s) 612
BamHI GGATCC 1 cut(s) 73
BanII GRGCYC 2 cut(s) 60, 237
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 2 cut(s) 60, 309
BbvI GCAGC 4 cut(s) 172, 380, 667, 695
BccI CCATC 2 cut(s) 404, 524
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 2 cut(s) 21, 263
BfmI CTRYAG 3 cut(s) 591, 657, 681
BfoI RGCGCY 1 cut(s) 374
BisI GCNGC 6 cut(s) 161, 366, 369, 374, 681, 684
BlsI GCNGC 6 cut(s) 162, 367, 370, 375, 682, 685
BmcAI AGTACT 1 cut(s) 585
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 4 cut(s) 101, 112, 275, 612
BmiI GGNNCC 2 cut(s) 75, 103
BmrFI CCNGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 394
Bpu14I TTCGAA 2 cut(s) 437, 521
BpuMI CCSGG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 2 cut(s) 8, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 110, 284
Bse118I RCCGGY 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 3 cut(s) 109, 110, 284
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 577
BseXI GCAGC 4 cut(s) 172, 380, 667, 695
BshFI GGCC 3 cut(s) 102, 114, 276
BsiHKAI GWGCWC 2 cut(s) 60, 309
BsiSI CCGG 5 cut(s) 9, 38, 77, 239, 461
BslI CCNNNNNNNGG 3 cut(s) 109, 110, 284
BsmAI GTCTC 1 cut(s) 559
BsnI GGCC 3 cut(s) 102, 114, 276
Bsp119I TTCGAA 2 cut(s) 437, 521
Bsp1286I GDGCHC 3 cut(s) 60, 237, 309
Bsp143I GATC 4 cut(s) 73, 220, 548, 619
BspACI CCGC 2 cut(s) 365, 374
BspANI GGCC 3 cut(s) 102, 114, 276
BspCNI CTCAG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 75, 103
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 4 cut(s) 68, 81, 215, 556
BspQI GCTCTTC 1 cut(s) 225
BspT104I TTCGAA 2 cut(s) 437, 521
BsrFI RCCGGY 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 4 cut(s) 73, 220, 548, 619
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 225, 629
BstBI TTCGAA 2 cut(s) 437, 521
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 415
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 4 cut(s) 76, 223, 551, 622
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 4 cut(s) 73, 220, 548, 619
BstMWI GCNNNNNNNGC 2 cut(s) 362, 689
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 3 cut(s) 591, 657, 681
BstV1I GCAGC 4 cut(s) 172, 380, 667, 695
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 2 cut(s) 73, 548
BstYI RGATCY 2 cut(s) 73, 548
BsuRI GGCC 3 cut(s) 102, 114, 276
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 1 cut(s) 394
CfoI GCGC 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 4 cut(s) 101, 112, 275, 612
Csp6I GTAC 3 cut(s) 49, 319, 584
CviAII CATG 4 cut(s) 175, 181, 377, 406
CviQI GTAC 3 cut(s) 49, 319, 584
DdeI CTNAG 1 cut(s) 193
DpnI GATC 4 cut(s) 75, 222, 550, 621
DpnII GATC 4 cut(s) 73, 220, 548, 619
Eam1104I CTCTTC 2 cut(s) 225, 629
EarI CTCTTC 2 cut(s) 225, 629
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 2 cut(s) 60, 237
Eco47I GGWCC 1 cut(s) 612
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoT38I GRGCYC 2 cut(s) 60, 237
FaeI CATG 4 cut(s) 178, 184, 380, 409
FatI CATG 4 cut(s) 174, 180, 376, 405
Fnu4HI GCNGC 6 cut(s) 161, 366, 369, 374, 681, 684
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 2 cut(s) 60, 237
Fsp4HI GCNGC 6 cut(s) 161, 366, 369, 374, 681, 684
FspBI CTAG 2 cut(s) 21, 263
GlaI GCGC 1 cut(s) 372
GluI GCNGC 6 cut(s) 161, 366, 369, 374, 681, 684
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 3 cut(s) 102, 114, 276
HapII CCGG 5 cut(s) 9, 38, 77, 239, 461
HhaI GCGC 1 cut(s) 373
Hin1II CATG 4 cut(s) 178, 184, 380, 409
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 567
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 5 cut(s) 9, 38, 77, 239, 461
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 31, 133, 598
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 2 cut(s) 536, 667
Hpy8I GTNNAC 3 cut(s) 31, 133, 598
HpyAV CCTTC 4 cut(s) 100, 234, 323, 395
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 27, 33
HpyCH4V TGCA 3 cut(s) 392, 554, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 689
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 2 cut(s) 27, 33
Hsp92II CATG 4 cut(s) 178, 184, 380, 409
HspAI GCGC 1 cut(s) 371
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 4 cut(s) 73, 220, 548, 619
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 9 cut(s) 22, 51, 90, 252, 346, 415, 474, 652, 657
Lsp1109I GCAGC 4 cut(s) 172, 380, 667, 695
MaeI CTAG 2 cut(s) 21, 263
MaeII ACGT 2 cut(s) 27, 33
MaeIII GTNAC 3 cut(s) 23, 79, 425
MalI GATC 4 cut(s) 75, 222, 550, 621
MboI GATC 4 cut(s) 73, 220, 548, 619
MboII GAAGA 7 cut(s) 242, 394, 616, 619, 622, 625, 644
MflI RGATCY 2 cut(s) 73, 548
MhlI GDGCHC 3 cut(s) 60, 237, 309
MluCI AATT 3 cut(s) 142, 201, 444
MlyI GAGTC 1 cut(s) 561
MnlI CCTC 7 cut(s) 64, 131, 182, 288, 334, 474, 555
MseI TTAA 2 cut(s) 30, 507
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 5 cut(s) 9, 38, 77, 239, 461
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 362, 689
NciI CCSGG 1 cut(s) 239
NdeII GATC 4 cut(s) 73, 220, 548, 619
NlaIII CATG 4 cut(s) 178, 184, 380, 409
NlaIV GGNNCC 2 cut(s) 75, 103
NmeAIII GCCGAG 2 cut(s) 78, 252
NmuCI GTSAC 2 cut(s) 23, 425
NspI RCATGY 1 cut(s) 380
NspV TTCGAA 2 cut(s) 437, 521
PciSI GCTCTTC 1 cut(s) 225
PkrI GCNGC 6 cut(s) 162, 367, 370, 375, 682, 685
PleI GAGTC 1 cut(s) 561
PpsI GAGTC 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 75, 103
PspPI GGNCC 4 cut(s) 101, 112, 275, 612
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 2 cut(s) 73, 548
RsaI GTAC 3 cut(s) 50, 320, 585
RsaNI GTAC 3 cut(s) 49, 319, 584
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 30, 507
SatI GCNGC 6 cut(s) 161, 366, 369, 374, 681, 684
Sau3AI GATC 4 cut(s) 73, 220, 548, 619
Sau96I GGNCC 4 cut(s) 101, 112, 275, 612
ScaI AGTACT 1 cut(s) 585
SchI GAGTC 1 cut(s) 561
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 3 cut(s) 60, 237, 309
SfcI CTRYAG 3 cut(s) 591, 657, 681
SfuI TTCGAA 2 cut(s) 437, 521
SinI GGWCC 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 3 cut(s) 142, 201, 444
SsiI CCGC 2 cut(s) 365, 374
SspI AATATT 1 cut(s) 674
SspMI CTAG 2 cut(s) 21, 263
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 30, 36
TaqI TCGA 2 cut(s) 437, 521
TasI AATT 3 cut(s) 142, 201, 444
TatI WGTACW 1 cut(s) 583
TauI GCSGC 2 cut(s) 368, 376
Tru1I TTAA 2 cut(s) 30, 507
Tru9I TTAA 2 cut(s) 30, 507
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 23, 425
TseI GCWGC 4 cut(s) 160, 368, 680, 683
Tsp45I GTSAC 2 cut(s) 23, 425
TspDTI ATGAA 3 cut(s) 30, 283, 394
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 380
XspI CTAG 2 cut(s) 21, 263
ZrmI AGTACT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.