Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004824.1

Orthogroup ID

OG0005000

Physical Location & Seq

Genomic Coordinates Forward (+)

20625 .. 21398

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004824.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgtcaggtggagttggtccaactgcagacattagccttcccaaagaacaagaacatgagttcaaagaacaccatgacccaatttcgtcctcaaaactcagccctaaaacttcaaagagccaaaccccacacaccaccactaaccgaaaaccaggtttgttctccttccggcagctcaatgccctcgccgtcatcattgtcctctcagccagtggcatggtaagccctcaagacctggcctttgttctcttctccattgcctacatgtacttcatctcaaaagttgctttccccatgcaatcttccactaaagaccctccagtcttcagcccccaaaacaagatcctacgcctctatgtcctcttgggtgccatcataggcctagtactccccatagcttacatcttcgagggcattttcgagggtgacaagcaaggaatcagcgcagcctcgccacatgttttccttcttgcaagtcaagttttcatggaagggttggctttcaccgacaggttttcgatcccaatacgcgttttcgtgccggttttttacaactccaggagaattttcaccattgtggagtggcttacaagtgagttttcaaaagggtatgaagagtatggtggatctgctaagagattataccttggcagagttcttgctattgctaatatggctttttggtgcttcaatctttttgggttcttattgccagtatatctacctagagctttcaagaaatattactctacgcataaggtgaaagaatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.88

Weight (kDa)

9.46

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52420
fragaria_vesca	FvH4_7g29870 FvH4_7g29880
malus_domestica	MD01G1205200.v1.1 MD07G1273600.v1.1 MD07G1273700.v1.1 MD07G1273800.v1.1
prunus_persica	Prupe.2G297600_v2.0.a1 Prupe.2G297700_v2.0.a1 Prupe.2G297800_v2.0.a1
pyrus_communis	pycom07g25020 pycom07g25030
rosa_chinensis	RchiOBHm_Chr1g0377831 RchiOBHm_Chr1g0377841
rosa_laevigata	RLG00000026493 RLG00000026494
rosa_multiflora	Rmu_sc0004824.1_g000007
rosa_roxburghii	Rroxscaffold_4G00281010 Rroxscaffold_4G00281020
rosa_rugosa	Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG426800 Rh1AG426900 Rh1BG382400 Rh1BG382500 Rh1CG396300 Rh1CG396400 Rh1DG413400 Rh1DG413500
rosa_wichuraiana	Rw1G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	1 cut(s)	531
AclWI	GGATC	3 cut(s)	337, 514, 634
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	1 cut(s)	310
AfaI	GTAC	2 cut(s)	269, 387
AflIII	ACRYGT	3 cut(s)	264, 457, 529
AgsI	TTSAA	5 cut(s)	64, 114, 603, 691, 736
AjnI	CCWGG	3 cut(s)	151, 234, 557
AleI	CACNNNNGTG	1 cut(s)	575
AluBI	AGCT	3 cut(s)	175, 398, 731
AluI	AGCT	3 cut(s)	175, 398, 731
AlwI	GGATC	3 cut(s)	337, 514, 634
AoxI	GGCC	2 cut(s)	237, 379
ApeKI	GCWGC	2 cut(s)	172, 446
ApoI	RAATTY	1 cut(s)	564
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	4 cut(s)	437, 496, 562, 772
AvaII	GGWCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	184, 458
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	3 cut(s)	153, 236, 559
BfaI	CTAG	2 cut(s)	383, 726
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	173, 447
BlsI	GCNGC	2 cut(s)	174, 448
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	3 cut(s)	153, 236, 559
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	3 cut(s)	153, 236, 559
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	2 cut(s)	303, 541
BpuEI	CTTGAG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	646
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	3 cut(s)	210, 320, 713
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	3 cut(s)	153, 236, 559
BseDI	CCNNGG	1 cut(s)	646
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	112, 219
BseNI	ACTGG	3 cut(s)	210, 320, 713
BseXI	GCAGC	2 cut(s)	184, 458
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	239, 381
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	169, 542
BsnI	GGCC	2 cut(s)	239, 381
Bsp143I	GATC	3 cut(s)	342, 519, 626
BspANI	GGCC	2 cut(s)	239, 381
BspCNI	CTCAG	2 cut(s)	111, 218
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	3 cut(s)	337, 514, 634
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	3 cut(s)	210, 320, 713
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	3 cut(s)	342, 519, 626
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	3 cut(s)	153, 236, 559
Bst6I	CTCTTC	2 cut(s)	254, 609
BstDEI	CTNAG	3 cut(s)	98, 205, 633
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	3 cut(s)	345, 522, 629
BstMBI	GATC	3 cut(s)	342, 519, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 674
BstNI	CCWGG	3 cut(s)	153, 236, 559
BstNSI	RCATGY	2 cut(s)	268, 461
BstSCI	CCNGG	3 cut(s)	151, 234, 557
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	184, 458
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	342, 626
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	2 cut(s)	342, 626
BsuRI	GGCC	2 cut(s)	239, 381
BtsIMutI	CAGTG	1 cut(s)	217
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	17
CsiI	ACCWGGT	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	268, 386
CviAII	CATG	7 cut(s)	56, 74, 217, 265, 295, 458, 487
CviQI	GTAC	2 cut(s)	268, 386
DdeI	CTNAG	3 cut(s)	98, 205, 633
DpnI	GATC	3 cut(s)	344, 521, 628
DpnII	GATC	3 cut(s)	342, 519, 626
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	254, 609
EarI	CTCTTC	2 cut(s)	254, 609
Eco130I	CCWWGG	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	151, 234, 557
EcoT14I	CCWWGG	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	7 cut(s)	59, 77, 220, 268, 298, 461, 490
FatI	CATG	7 cut(s)	55, 73, 216, 264, 294, 457, 486
Fnu4HI	GCNGC	2 cut(s)	173, 447
Fsp4HI	GCNGC	2 cut(s)	173, 447
FspBI	CTAG	2 cut(s)	383, 726
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	2 cut(s)	173, 447
GsuI	CTGGAG	2 cut(s)	303, 541
HaeIII	GGCC	2 cut(s)	239, 381
HapII	CCGG	2 cut(s)	169, 542
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	7 cut(s)	59, 77, 220, 268, 298, 461, 490
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	438
HpaII	CCGG	2 cut(s)	169, 542
HphI	GGTGA	4 cut(s)	437, 496, 562, 772
Hpy188III	TCNNGA	2 cut(s)	230, 736
HpyAV	CCTTC	4 cut(s)	47, 175, 476, 485
HpyCH4V	TGCA	3 cut(s)	26, 298, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 674
HpyF3I	CTNAG	3 cut(s)	98, 205, 633
Hsp92II	CATG	7 cut(s)	59, 77, 220, 268, 298, 461, 490
HspAI	GCGC	1 cut(s)	444
Kzo9I	GATC	3 cut(s)	342, 519, 626
Lsp1109I	GCAGC	2 cut(s)	184, 458
MabI	ACCWGGT	1 cut(s)	151
MaeI	CTAG	2 cut(s)	383, 726
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	3 cut(s)	344, 521, 628
MboI	GATC	3 cut(s)	342, 519, 626
MboII	GAAGA	5 cut(s)	241, 294, 316, 397, 626
MflI	RGATCY	2 cut(s)	342, 626
MluCI	AATT	2 cut(s)	81, 564
MluI	ACGCGT	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	575
MspI	CCGG	2 cut(s)	169, 542
MspR9I	CCNGG	3 cut(s)	153, 236, 559
MvaI	CCWGG	3 cut(s)	153, 236, 559
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	222, 674
NdeII	GATC	3 cut(s)	342, 519, 626
NlaIII	CATG	7 cut(s)	59, 77, 220, 268, 298, 461, 490
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	2 cut(s)	268, 461
OliI	CACNNNNGTG	1 cut(s)	575
PceI	AGGCCT	1 cut(s)	381
PciI	ACATGT	2 cut(s)	264, 457
PfeI	GAWTC	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	174, 448
PscI	ACATGT	2 cut(s)	264, 457
Psp6I	CCWGG	3 cut(s)	151, 234, 557
PspGI	CCWGG	3 cut(s)	151, 234, 557
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	342, 626
RsaI	GTAC	2 cut(s)	269, 387
RsaNI	GTAC	2 cut(s)	268, 386
RseI	CAYNNNNRTG	1 cut(s)	575
SatI	GCNGC	2 cut(s)	173, 447
Sau3AI	GATC	3 cut(s)	342, 519, 626
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	387
ScrFI	CCNGG	3 cut(s)	153, 236, 559
SexAI	ACCWGGT	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	81, 564
SseBI	AGGCCT	1 cut(s)	381
SspI	AATATT	2 cut(s)	743, 770
SspMI	CTAG	2 cut(s)	383, 726
StuI	AGGCCT	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	151, 234, 557
StyI	CCWWGG	1 cut(s)	646
TaqI	TCGA	3 cut(s)	408, 420, 518
TasI	AATT	2 cut(s)	81, 564
TatI	WGTACW	2 cut(s)	267, 385
TfiI	GAWTC	1 cut(s)	438
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	172, 446
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	262, 475, 627
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	2 cut(s)	268, 461
XspI	CTAG	2 cut(s)	383, 726
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.