MD07G1273600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0005000
Physical Location & Seq
Forward (+)
33938536 .. 33938736
201 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1273600.v1.1.491

Sequence Viewer

Length: 201 bp
ATGGATTGGGTTAGGAACGAATTCTCCAAAGTGTGTGTTGGTGGTGGTTGTGACGCAGCTGCAGAAAGAAGAGTGCTTCTTGGGAGAGGACTTGCTGTTGCTAACTTGGTGTTTTGGAGTTTAGATCTTTTTTGTTTTATGTTACCTATTTATCTTCCTAGAGCTTTCAAGAAATATTACTCATCTGCGAAAACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.47

Weight (kDa)

8.96

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 1 - 60 9.8e-20 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 20
AgsI TTSAA 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 59, 164
AluI AGCT 2 cut(s) 59, 164
ApeKI GCWGC 2 cut(s) 56, 59
ApoI RAATTY 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 46, 68
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 124
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
BseXI GCAGC 2 cut(s) 46, 68
Bsp143I GATC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 64
BssMI GATC 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 64
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 46, 68
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
CseI GACGC 1 cut(s) 62
CviJI RGCY 2 cut(s) 59, 164
CviKI_1 RGCY 2 cut(s) 59, 164
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 20
FaiI YATR 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 57, 60
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 1 cut(s) 159
GluI GCNGC 2 cut(s) 57, 60
HgaI GACGC 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 62
Kzo9I GATC 1 cut(s) 124
Lsp1109I GCAGC 2 cut(s) 46, 68
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 50, 141
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 2 cut(s) 81, 146
MflI RGATCY 1 cut(s) 124
MluCI AATT 1 cut(s) 20
MnlI CCTC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 59
NdeII GATC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 58, 61
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 59
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 1 cut(s) 124
SetI ASST 3 cut(s) 61, 148, 166
SfcI CTRYAG 1 cut(s) 60
SgeI CNNG 5 cut(s) 92, 104, 118, 171, 181
Sse9I AATT 1 cut(s) 20
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 159
TasI AATT 1 cut(s) 20
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 56, 59
Tsp45I GTSAC 1 cut(s) 50
XapI RAATTY 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.