FvH4_7g29870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005000
Physical Location & Seq
Forward (+)
21867780 .. 21868583
804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29870.t1

Sequence Viewer

Length: 768 bp
ATGTCTTCTGGTGATGAAGCTGGTGACCCAAAAATCACAGAGAAAGAGTACCATGAACTCAAACAAAGCGAAGATCCGGTTACTTCAGCCTTCAAACTCGGCCCCCAAAATGGCCAAACCTTCAATACTGTCCACAAACATAACTACATACCCTTTTGGCAGCTCAACTGCCTCATGGTCATGGTAGTCCTCTCAGCCAGTGGCTTGGTTAGTCCTCAGGATTTTGCTTTTGTTGTCTTCTCCATCATCTACCTCTTCTTCCTCTCGAAATTTGCTTTTCCAAAGCTCACTGATCCTATGGAAGAGCCCCCGGTGTTCAACCCCGAAAGCTATCTAGTTCGGCTTGGTCCTCTCTTTGGTGGCATCATAGGCATTGTGATCCCAATTGCTTACATATTTGAAGGGTTTATAGAGGGAGACAAAGAAGGAATCAGGGCTGCTGCGCCCCATGTTTTCCTTCTTGCGAGCCAAGTCTTCATGGATGGAGTGGCTTTTAGTGACAGGTTTTCGATACCCATAAGGGTTTTCGTGCCGGTTTTCTACAATGCCAAGAGGATTTTTACCCTTGTGGATTGGGTTAAGAGAGAGTTTTCGAAAGCTGGTGATCAAGAGTATGGTGGATCTGCAAGTGAAAGGAGACTGTTTCTTGGCAGAGTACTTGCTGTTGTTAACTTGGTGTTTTGGTCCTATGACCTCTTCTTCTTCATGTTGCCTGTTTATCTTCCTAGAGCTTTCAGGAAATATTATGCTGCAGCAAAATCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.91

Weight (kDa)

6.11

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 52 - 249 1.1e-82 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 68, 287, 373, 628
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 2 cut(s) 50, 657
AfiI CCNNNNNNNGG 2 cut(s) 110, 356
AgsI TTSAA 4 cut(s) 94, 124, 319, 401
AluBI AGCT 6 cut(s) 20, 163, 286, 330, 599, 731
AluI AGCT 6 cut(s) 20, 163, 286, 330, 599, 731
Alw26I GTCTC 2 cut(s) 411, 631
AlwI GGATC 4 cut(s) 68, 287, 373, 628
AoxI GGCC 2 cut(s) 100, 112
ApeKI GCWGC 5 cut(s) 160, 437, 440, 749, 752
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 101, 347, 684
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 23, 35, 614
AsuII TTCGAA 1 cut(s) 593
AvaII GGWCC 2 cut(s) 347, 684
AxyI CCTNAGG 1 cut(s) 216
BalI TGGCCA 1 cut(s) 114
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 2 cut(s) 229, 466
BbvI GCAGC 5 cut(s) 172, 424, 427, 736, 764
BccI CCATC 2 cut(s) 251, 476
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 2 cut(s) 411, 631
BfaI CTAG 2 cut(s) 335, 726
BfmI CTRYAG 1 cut(s) 750
BisI GCNGC 5 cut(s) 161, 438, 441, 750, 753
BlsI GCNGC 5 cut(s) 162, 439, 442, 751, 754
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 2 cut(s) 347, 684
BmgT120I GGNCC 3 cut(s) 101, 347, 684
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 372
BpiI GAAGAC 2 cut(s) 229, 466
Bpu14I TTCGAA 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 356
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 198
Bse21I CCTNAGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 110, 356
BseMII CTCAG 2 cut(s) 207, 230
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 5 cut(s) 172, 424, 427, 736, 764
BshFI GGCC 2 cut(s) 102, 114
BsiSI CCGG 3 cut(s) 77, 311, 533
BslI CCNNNNNNNGG 2 cut(s) 110, 356
BsmAI GTCTC 2 cut(s) 411, 631
BsnI GGCC 2 cut(s) 102, 114
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 5 cut(s) 73, 292, 378, 604, 620
BspANI GGCC 2 cut(s) 102, 114
BspCNI CTCAG 2 cut(s) 206, 229
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 4 cut(s) 68, 287, 373, 628
BspQI GCTCTTC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 5 cut(s) 73, 292, 378, 604, 620
Bst4CI ACNGT 2 cut(s) 130, 642
Bst6I CTCTTC 3 cut(s) 260, 297, 701
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 193, 216
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 5 cut(s) 76, 295, 381, 607, 623
BstMAI GTCTC 2 cut(s) 411, 631
BstMBI GATC 5 cut(s) 73, 292, 378, 604, 620
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 750
BstV1I GCAGC 5 cut(s) 172, 424, 427, 736, 764
BstV2I GAAGAC 2 cut(s) 229, 466
BstX2I RGATCY 2 cut(s) 73, 620
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 2 cut(s) 73, 620
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 2 cut(s) 102, 114
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 2 cut(s) 205, 288
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 3 cut(s) 101, 347, 684
Csp6I GTAC 2 cut(s) 49, 656
CviAII CATG 6 cut(s) 53, 175, 181, 449, 478, 706
CviQI GTAC 2 cut(s) 49, 656
DdeI CTNAG 2 cut(s) 193, 216
DpnI GATC 5 cut(s) 75, 294, 380, 606, 622
DpnII GATC 5 cut(s) 73, 292, 378, 604, 620
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 3 cut(s) 260, 297, 701
EarI CTCTTC 3 cut(s) 260, 297, 701
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 347, 684
Eco57I CTGAAG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 309
FaeI CATG 6 cut(s) 56, 178, 184, 452, 481, 709
FatI CATG 6 cut(s) 52, 174, 180, 448, 477, 705
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 5 cut(s) 161, 438, 441, 750, 753
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 5 cut(s) 161, 438, 441, 750, 753
FspBI CTAG 2 cut(s) 335, 726
GlaI GCGC 1 cut(s) 444
GluI GCNGC 5 cut(s) 161, 438, 441, 750, 753
HaeIII GGCC 2 cut(s) 102, 114
HapII CCGG 3 cut(s) 77, 311, 533
HhaI GCGC 1 cut(s) 445
Hin1II CATG 6 cut(s) 56, 178, 184, 452, 481, 709
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 1 cut(s) 429
HpaI GTTAAC 1 cut(s) 670
HpaII CCGG 3 cut(s) 77, 311, 533
HphI GGTGA 3 cut(s) 23, 35, 614
Hpy166II GTNNAC 2 cut(s) 133, 670
Hpy188I TCNGA 1 cut(s) 763
Hpy188III TCNNGA 4 cut(s) 218, 265, 608, 736
Hpy8I GTNNAC 2 cut(s) 133, 670
HpyAV CCTTC 5 cut(s) 100, 130, 395, 419, 467
HpyCH4III ACNGT 2 cut(s) 130, 642
HpyCH4V TGCA 2 cut(s) 626, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 2 cut(s) 193, 216
Hsp92II CATG 6 cut(s) 56, 178, 184, 452, 481, 709
HspAI GCGC 1 cut(s) 443
Ksp22I TGATCA 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 670
Kzo9I GATC 5 cut(s) 73, 292, 378, 604, 620
LguI GCTCTTC 1 cut(s) 297
Lsp1109I GCAGC 5 cut(s) 172, 424, 427, 736, 764
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 335, 726
MaeIII GTNAC 3 cut(s) 23, 79, 497
MalI GATC 5 cut(s) 75, 294, 380, 606, 622
MboI GATC 5 cut(s) 73, 292, 378, 604, 620
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 2 cut(s) 73, 620
MhlI GDGCHC 1 cut(s) 309
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 2 cut(s) 269, 384
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 9 cut(s) 182, 200, 225, 263, 272, 360, 406, 546, 704
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 2 cut(s) 579, 669
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 3 cut(s) 77, 311, 533
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 311
NdeII GATC 5 cut(s) 73, 292, 378, 604, 620
NlaIII CATG 6 cut(s) 56, 178, 184, 452, 481, 709
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 23, 497
NspV TTCGAA 1 cut(s) 593
PciSI GCTCTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 429
PkrI GCNGC 5 cut(s) 162, 439, 442, 751, 754
PspEI GGTNACC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 3 cut(s) 101, 347, 684
PstI CTGCAG 1 cut(s) 754
PsuI RGATCY 2 cut(s) 73, 620
RsaI GTAC 2 cut(s) 50, 657
RsaNI GTAC 2 cut(s) 49, 656
RseI CAYNNNNRTG 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 579, 669
SatI GCNGC 5 cut(s) 161, 438, 441, 750, 753
Sau3AI GATC 5 cut(s) 73, 292, 378, 604, 620
Sau96I GGNCC 3 cut(s) 101, 347, 684
ScaI AGTACT 1 cut(s) 657
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 750
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 2 cut(s) 347, 684
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 2 cut(s) 269, 384
SspI AATATT 1 cut(s) 743
SspMI CTAG 2 cut(s) 335, 726
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 130, 642
TaqI TCGA 3 cut(s) 266, 509, 593
TasI AATT 2 cut(s) 269, 384
TatI WGTACW 1 cut(s) 655
TfiI GAWTC 1 cut(s) 429
Tru1I TTAA 2 cut(s) 579, 669
Tru9I TTAA 2 cut(s) 579, 669
TscAI CASTG 2 cut(s) 205, 295
TseFI GTSAC 2 cut(s) 23, 497
TseI GCWGC 5 cut(s) 160, 437, 440, 749, 752
Tsp45I GTSAC 2 cut(s) 23, 497
TspDTI ATGAA 4 cut(s) 30, 69, 466, 694
TspRI CASTG 2 cut(s) 205, 295
VpaK11BI GGWCC 2 cut(s) 347, 684
XapI RAATTY 1 cut(s) 269
XspI CTAG 2 cut(s) 335, 726
ZrmI AGTACT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.