Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005000

Physical Location & Seq

Genomic Coordinates Forward (+)

28761776 .. 28763037

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCTGCTGCAACTCACGAAGACCTTAGCCTTCAAGAAGAACAAGAACAGGATCATGAATGTGTATTCAAACAACAAAACGACGACGTCCCAGCAAGCTCCCTGAAATACCTCAACCCAGAAAAGGGTCAAACCATGGAAACTGTACGCAAAGTTAACCTCATCTCTCTGTGGCAGCTCAATGCCCTCATAGTCATGCTTGTCTTCTCAGCCAGCGGCATGGTCAGCCTGCAAGACTTGGCCTTTGTTTTCTTCTCCATCGTCTACATCTTTATCCTCTCCAAATTCTCCTTCCCAACTATTTCCAGAGACCCATCTCAGGACATACCAGTCTTCAACCCGCAAAGCAAAATGGTCAGACTTGGCCCAATCTTTGGAGCCGTCATCGGCCTCGTCCTCCCCATAGCCTATATCTTCGATGGCTTCTTGGAAGGAGATAAAGAAGGTATCAGAGCGGCTGCCCCGCACGTGTTTCTTCTTGCCAGTCAAGCCTTTGTCGACGGAGTGGCTTTCTCCGACAGGTTCTCGACTCCGATTCGGGTTTTCGTGCCGGTTTTCTTTAACGCGAAGAGGATTTTCACGCTTGTGGATTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.28

Weight (kDa)

4.99

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52420
fragaria_vesca	FvH4_7g29870 FvH4_7g29880
malus_domestica	MD01G1205200.v1.1 MD07G1273600.v1.1 MD07G1273700.v1.1 MD07G1273800.v1.1
prunus_persica	Prupe.2G297600_v2.0.a1 Prupe.2G297700_v2.0.a1 Prupe.2G297800_v2.0.a1
pyrus_communis	pycom07g25020 pycom07g25030
rosa_chinensis	RchiOBHm_Chr1g0377831 RchiOBHm_Chr1g0377841
rosa_laevigata	RLG00000026493 RLG00000026494
rosa_multiflora	Rmu_sc0004824.1_g000007
rosa_roxburghii	Rroxscaffold_4G00281010 Rroxscaffold_4G00281020
rosa_rugosa	Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG426800 Rh1AG426900 Rh1BG382400 Rh1BG382500 Rh1CG396300 Rh1CG396400 Rh1DG413400 Rh1DG413500
rosa_wichuraiana	Rw1G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AatII	GACGTC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccBSI	CCGCTC	1 cut(s)	455
AccI	GTMKAC	2 cut(s)	264, 498
AccII	CGCG	1 cut(s)	566
AciI	CCGC	4 cut(s)	216, 341, 455, 464
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	284
AcvI	CACGTG	1 cut(s)	469
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	4 cut(s)	124, 125, 319, 374
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	35, 70, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	2 cut(s)	99, 178
AluI	AGCT	2 cut(s)	99, 178
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	3 cut(s)	240, 364, 388
ApeKI	GCWGC	4 cut(s)	5, 8, 175, 458
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	469
BbsI	GAAGAC	3 cut(s)	27, 196, 325
BbvI	GCAGC	2 cut(s)	187, 445
BccI	CCATC	3 cut(s)	266, 322, 413
BceAI	ACGGC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	303
BisI	GCNGC	6 cut(s)	6, 9, 176, 217, 456, 459
BlsI	GCNGC	6 cut(s)	7, 10, 177, 218, 457, 460
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	379
BpiI	GAAGAC	3 cut(s)	27, 196, 325
Bpu10I	CCTNAGC	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	469
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 125, 319, 374
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	329, 483
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	4 cut(s)	124, 125, 319, 374
BseMII	CTCAG	2 cut(s)	222, 332
BseNI	ACTGG	2 cut(s)	329, 483
BseXI	GCAGC	2 cut(s)	187, 445
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	3 cut(s)	242, 366, 390
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	4 cut(s)	124, 125, 319, 374
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	242, 366, 390
Bso31I	GGTCTC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	52
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	4 cut(s)	216, 341, 455, 464
BspANI	GGCC	3 cut(s)	242, 366, 390
BspCNI	CTCAG	2 cut(s)	221, 331
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	303
BsrBI	CCGCTC	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	329, 483
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	3 cut(s)	97, 214, 230
BstDEI	CTNAG	3 cut(s)	26, 208, 318
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 488
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	187, 445
BstV2I	GAAGAC	3 cut(s)	27, 196, 325
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	242, 366, 390
BtgI	CCRYGG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	97, 214, 230
CciI	TCATGA	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	4 cut(s)	56, 136, 196, 220
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	3 cut(s)	26, 208, 318
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	303
Eco72I	CACGTG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	4 cut(s)	59, 139, 199, 223
FaiI	YATR	8 cut(s)	57, 137, 191, 197, 221, 326, 404, 411
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	4 cut(s)	55, 135, 195, 219
FauI	CCCGC	2 cut(s)	348, 471
FblI	GTMKAC	2 cut(s)	264, 498
Fnu4HI	GCNGC	6 cut(s)	6, 9, 176, 217, 456, 459
Fsp4HI	GCNGC	6 cut(s)	6, 9, 176, 217, 456, 459
GluI	GCNGC	6 cut(s)	6, 9, 176, 217, 456, 459
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	3 cut(s)	242, 366, 390
HapII	CCGG	1 cut(s)	551
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	59, 139, 199, 223
HincII	GTYRAC	2 cut(s)	157, 499
HindII	GTYRAC	2 cut(s)	157, 499
HinfI	GANTC	2 cut(s)	529, 535
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	551
Hpy166II	GTNNAC	3 cut(s)	157, 265, 499
Hpy188I	TCNGA	4 cut(s)	359, 452, 517, 534
Hpy188III	TCNNGA	6 cut(s)	17, 35, 56, 306, 320, 526
Hpy8I	GTNNAC	3 cut(s)	157, 265, 499
Hpy99I	CGWCG	3 cut(s)	86, 89, 503
HpyAV	CCTTC	4 cut(s)	41, 301, 425, 437
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	87, 468
HpyCH4V	TGCA	2 cut(s)	11, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 488
HpyF3I	CTNAG	3 cut(s)	26, 208, 318
HpySE526I	ACGT	2 cut(s)	87, 468
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	59, 139, 199, 223
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	104, 377
Lsp1109I	GCAGC	2 cut(s)	187, 445
MaeII	ACGT	2 cut(s)	87, 468
MalI	GATC	1 cut(s)	54
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	1 cut(s)	52
MboII	GAAGA	8 cut(s)	32, 50, 196, 244, 325, 406, 467, 580
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	7 cut(s)	122, 170, 197, 287, 401, 407, 564
MseI	TTAA	2 cut(s)	156, 561
MslI	CAYNNNNRTG	3 cut(s)	60, 194, 584
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	225, 488
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	59, 139, 199, 223
NlaIV	GGNNCC	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	584
PagI	TCATGA	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	535
PflFI	GACNNNGTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	6 cut(s)	7, 10, 177, 218, 457, 460
PleI	GAGTC	1 cut(s)	523
PmaCI	CACGTG	1 cut(s)	469
PmlI	CACGTG	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	469
PspCI	CACGTG	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	365
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	3 cut(s)	60, 194, 584
SalI	GTCGAC	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	156, 561
SatI	GCNGC	6 cut(s)	6, 9, 176, 217, 456, 459
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	523
SetI	ASST	9 cut(s)	27, 90, 101, 114, 162, 180, 448, 471, 524
SmiMI	CAYNNNNRTG	3 cut(s)	60, 194, 584
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	4 cut(s)	216, 341, 455, 464
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	90, 471
TaqI	TCGA	3 cut(s)	417, 498, 527
TasI	AATT	1 cut(s)	284
TauI	GCSGC	2 cut(s)	219, 458
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	156, 561
Tru9I	TTAA	2 cut(s)	156, 561
TseI	GCWGC	4 cut(s)	5, 8, 175, 458
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	374
XapI	RAATTY	1 cut(s)	284
XmiI	GTMKAC	2 cut(s)	264, 498
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.