RLG00000026493

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005000
Physical Location & Seq
Reverse (-)
3385710 .. 3386631
922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026493

Sequence Viewer

Length: 792 bp
ATGTCAGGTGGAGTTGGTCCAACTGCAGACATTAGCCTTCCCAAAGAACAAGAACATGAGTTCAAAGAACACCATGACCCAATTTCTTCCTCAAAACTCAGCCCTAAAACTTCAAAGAGCCAAACCCCATACACCACCACTAACCGAAAACCAGGTTTGTTCTCCTTCCGGCAGCTCAATGCCCTCGCCGTCATCATTGTCCTCTCAGCCAGTGGCATGGTAAGCCCTCAAGACCTGGCCTTTGTTCTCTTCTCTATTGCCTACATGTACTTCATCTCAAAAGTTGCTTTCCCCATGCAATCTTCCACTAAAGACCCTCCAGTCTTCAGCCCCCAAAACAAGATCCTACGCCTCTATGTCCTCTTGGGTGCCATCATAGGCCTAGTGCTCCCCATAGCTTACATCTTCGAGGGCATTTTCGAGGGTGACAAGCAAGGAATCAGCGCAGCCTCGCCACATGTTTTCCTTCTTGCAAGTCAAGTTTTCATGGAAGGGTTGGCTTTCACCGACAGGTTTTCGATACCAATACGCGTTTTCGTGCCCGTTTTTTACAACTCCAGGAGGATTTTCACCATTGTGGAGTGGATTACAAGTGAGTTTTCAAAAGGGTATGAAGAGTATGGTGGATCTGCTAAGAGATTATACCTTGGCAGAGTTCTTGCTATTGCTAATATGGCTTTTTGGTGCTTCAATCTTTTTGGGTTCTTATTGCCAGTATATCTACCTAGAGCTTTCAAGAAATATTACTCTACGCATAAGCATGTTGCTTCGTTTGAGCTGTTAGTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.45

Weight (kDa)

9.39

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 54 - 249 2.1e-93 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 1 cut(s) 531
AclWI GGATC 2 cut(s) 337, 634
AcuI CTGAAG 1 cut(s) 310
AfaI GTAC 1 cut(s) 269
AflIII ACRYGT 3 cut(s) 264, 457, 529
AgsI TTSAA 5 cut(s) 64, 114, 603, 691, 736
AjnI CCWGG 3 cut(s) 151, 234, 557
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 5 cut(s) 175, 398, 731, 778, 788
AluI AGCT 5 cut(s) 175, 398, 731, 778, 788
Alw21I GWGCWC 1 cut(s) 390
AlwI GGATC 2 cut(s) 337, 634
AoxI GGCC 2 cut(s) 237, 379
ApeKI GCWGC 2 cut(s) 172, 446
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 437, 496, 562
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 543
BanI GGYRCC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 184, 458
BccI CCATC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 3 cut(s) 153, 236, 559
BfaI CTAG 2 cut(s) 383, 726
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 173, 447
BlsI GCNGC 2 cut(s) 174, 448
Bme1390I CCNGG 3 cut(s) 153, 236, 559
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 3 cut(s) 153, 236, 559
BpiI GAAGAC 1 cut(s) 316
BpmI CTGGAG 2 cut(s) 303, 541
BpuEI CTTGAG 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 646
Bse1I ACTGG 3 cut(s) 210, 320, 713
BseBI CCWGG 3 cut(s) 153, 236, 559
BseDI CCNNGG 1 cut(s) 646
BseMII CTCAG 2 cut(s) 112, 219
BseNI ACTGG 3 cut(s) 210, 320, 713
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 2 cut(s) 184, 458
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 239, 381
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 1 cut(s) 169
BsnI GGCC 2 cut(s) 239, 381
Bsp1286I GDGCHC 2 cut(s) 390, 543
Bsp143I GATC 2 cut(s) 342, 626
BspANI GGCC 2 cut(s) 239, 381
BspCNI CTCAG 2 cut(s) 111, 218
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 2 cut(s) 337, 634
BspT107I GGYRCC 1 cut(s) 368
BsrI ACTGG 3 cut(s) 210, 320, 713
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 2 cut(s) 342, 626
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 3 cut(s) 153, 236, 559
Bst6I CTCTTC 2 cut(s) 254, 609
BstDEI CTNAG 4 cut(s) 98, 205, 633, 789
BstFNI CGCG 1 cut(s) 531
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 2 cut(s) 345, 629
BstMBI GATC 2 cut(s) 342, 626
BstMWI GCNNNNNNNGC 2 cut(s) 222, 674
BstNI CCWGG 3 cut(s) 153, 236, 559
BstNSI RCATGY 3 cut(s) 268, 461, 764
BstSCI CCNGG 3 cut(s) 151, 234, 557
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 184, 458
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 342, 626
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 342, 626
BsuRI GGCC 2 cut(s) 239, 381
BtsIMutI CAGTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 151
Csp6I GTAC 1 cut(s) 268
CviAII CATG 8 cut(s) 56, 74, 217, 265, 295, 458, 487, 761
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 4 cut(s) 98, 205, 633, 789
DpnI GATC 2 cut(s) 344, 628
DpnII GATC 2 cut(s) 342, 626
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 254, 609
EarI CTCTTC 2 cut(s) 254, 609
Eco130I CCWWGG 1 cut(s) 646
Eco147I AGGCCT 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 310
EcoRII CCWGG 3 cut(s) 151, 234, 557
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 8 cut(s) 59, 77, 220, 268, 298, 461, 490, 764
FatI CATG 8 cut(s) 55, 73, 216, 264, 294, 457, 486, 760
Fnu4HI GCNGC 2 cut(s) 173, 447
Fsp4HI GCNGC 2 cut(s) 173, 447
FspBI CTAG 2 cut(s) 383, 726
GlaI GCGC 1 cut(s) 445
GluI GCNGC 2 cut(s) 173, 447
GsuI CTGGAG 2 cut(s) 303, 541
HaeIII GGCC 2 cut(s) 239, 381
HapII CCGG 1 cut(s) 169
HhaI GCGC 1 cut(s) 446
Hin1II CATG 8 cut(s) 59, 77, 220, 268, 298, 461, 490, 764
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 1 cut(s) 438
HpaII CCGG 1 cut(s) 169
HphI GGTGA 3 cut(s) 437, 496, 562
Hpy188III TCNNGA 2 cut(s) 230, 736
HpyAV CCTTC 4 cut(s) 47, 175, 476, 485
HpyCH4V TGCA 3 cut(s) 26, 298, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 674
HpyF3I CTNAG 4 cut(s) 98, 205, 633, 789
Hsp92II CATG 8 cut(s) 59, 77, 220, 268, 298, 461, 490, 764
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 342, 626
LmnI GCTCC 1 cut(s) 393
Lsp1109I GCAGC 2 cut(s) 184, 458
MabI ACCWGGT 1 cut(s) 151
MaeI CTAG 2 cut(s) 383, 726
MaeIII GTNAC 1 cut(s) 425
MalI GATC 2 cut(s) 344, 628
MboI GATC 2 cut(s) 342, 626
MboII GAAGA 6 cut(s) 78, 241, 294, 316, 397, 626
MflI RGATCY 2 cut(s) 342, 626
MhlI GDGCHC 2 cut(s) 390, 543
MluCI AATT 1 cut(s) 81
MluI ACGCGT 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 44
MslI CAYNNNNRTG 2 cut(s) 575, 759
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 153, 236, 559
MvaI CCWGG 3 cut(s) 153, 236, 559
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 222, 674
NdeII GATC 2 cut(s) 342, 626
NlaIII CATG 8 cut(s) 59, 77, 220, 268, 298, 461, 490, 764
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 3 cut(s) 268, 461, 764
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 1 cut(s) 381
PciI ACATGT 2 cut(s) 264, 457
PfeI GAWTC 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 557
PkrI GCNGC 2 cut(s) 174, 448
PscI ACATGT 2 cut(s) 264, 457
Psp6I CCWGG 3 cut(s) 151, 234, 557
PspGI CCWGG 3 cut(s) 151, 234, 557
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 2 cut(s) 342, 626
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 2 cut(s) 575, 759
SatI GCNGC 2 cut(s) 173, 447
Sau3AI GATC 2 cut(s) 342, 626
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 3 cut(s) 153, 236, 559
SduI GDGCHC 2 cut(s) 390, 543
SexAI ACCWGGT 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 2 cut(s) 575, 759
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 1 cut(s) 81
SseBI AGGCCT 1 cut(s) 381
SspI AATATT 1 cut(s) 743
SspMI CTAG 2 cut(s) 383, 726
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 151, 234, 557
StyI CCWWGG 1 cut(s) 646
TaqI TCGA 3 cut(s) 408, 420, 518
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 438
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 2 cut(s) 172, 446
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 3 cut(s) 262, 475, 627
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 3 cut(s) 268, 461, 764
XspI CTAG 2 cut(s) 383, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.