FvH4_7g29880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005000
Physical Location & Seq
Forward (+)
21868963 .. 21870130
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29880.t1

Sequence Viewer

Length: 774 bp
ATGTCAGGTGGAGTTGGTCCAACTAGTGACATTAGCCTTCCCAAAGAACAAGAACAGGAGTTCAAAGAACACCATGATCCTATTTCTTCATCTAAACTCAGCCCCAAATCTCAAAAGAACCAAACCCAACAAAGCACCACTAACCGGAAACCGGGTTCATTCTCCTTCCGGCAGCTCAATGCCCTCGCCGTCATTGTTGTCCTCTCAGCCAGTGGCATGGTAAGCCCTCAAGACCTAGCCTTTGTTCTCTTCTCCATTGCATACATGTACTTCATCTCCAAAGTTGCCTTCCCCATCCAATCTTCCATTAAAGACCCTGCAGTCTTCGGCCCCCAAAACAAGATCCTACGCCTCTACGTCCTCTTGGGTGCCATCATAGGCCTAGTGCTCCCCATAGCTTACATATTCGAGGGCATTTTCGAGAGTGACAAGCAAGGAATCAGCGCAGCCTCGCCACACGTGTTCCTTCTTGCAAGCCAAGTCTTCATGGAAGGGTTGGCTTTCTCTGACCAGTTTTCGACACCAATACGCGTTTTCGTGCCGGTTTTCTACAACTCCAGGAGGATTTTCACCATTGTGGAGTGGCTTACAAGTGAGTTTTCAAAAGACTACGCAGAGTATGGTGGATCTGCCAAGAGATTGTACCTTGGCAGAGCTCTTGCTATTGCTAATATGGCTTTCTGGAGCTTCAATCTTTTTGGGTTCTTATTGCCAGTATATCTTCCTAGAGCTTTCAAGAAATATTACTCTACACATAAAGTGAAAGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.78

Weight (kDa)

9.43

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 54 - 249 4.1e-91 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 1 cut(s) 531
AclWI GGATC 3 cut(s) 71, 337, 634
AcvI CACGTG 1 cut(s) 460
AfaI GTAC 2 cut(s) 269, 644
AfiI CCNNNNNNNGG 2 cut(s) 144, 151
AflIII ACRYGT 4 cut(s) 264, 457, 459, 529
AgsI TTSAA 4 cut(s) 64, 603, 691, 736
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 557
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AleI CACNNNNGTG 1 cut(s) 575
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 5 cut(s) 175, 398, 656, 687, 731
AluI AGCT 5 cut(s) 175, 398, 656, 687, 731
Alw21I GWGCWC 2 cut(s) 390, 658
AlwI GGATC 3 cut(s) 71, 337, 634
AoxI GGCC 2 cut(s) 328, 379
ApeKI GCWGC 2 cut(s) 172, 446
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 2 cut(s) 17, 329
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 562
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 658
BbrPI CACGTG 1 cut(s) 460
BbsI GAAGAC 2 cut(s) 316, 475
Bbv12I GWGCWC 2 cut(s) 390, 658
BbvI GCAGC 2 cut(s) 184, 458
BccI CCATC 2 cut(s) 302, 380
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 559
BcnI CCSGG 1 cut(s) 153
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 24, 236, 383, 726
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 2 cut(s) 173, 447
BlsI GCNGC 2 cut(s) 174, 448
Bme1390I CCNGG 2 cut(s) 153, 559
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 17, 329
BmiI GGNNCC 2 cut(s) 331, 370
BmrFI CCNGG 2 cut(s) 153, 559
BpiI GAAGAC 2 cut(s) 316, 475
BpmI CTGGAG 2 cut(s) 541, 703
BpuEI CTTGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 646
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 151
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 3 cut(s) 210, 511, 713
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 559
BseDI CCNNGG 1 cut(s) 646
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 144, 151
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 112, 219
BseNI ACTGG 3 cut(s) 210, 511, 713
BseXI GCAGC 2 cut(s) 184, 458
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 330, 381
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 2 cut(s) 390, 658
BsiSI CCGG 4 cut(s) 145, 152, 169, 542
BslI CCNNNNNNNGG 2 cut(s) 144, 151
BsnI GGCC 2 cut(s) 330, 381
Bsp1286I GDGCHC 2 cut(s) 390, 658
Bsp143I GATC 3 cut(s) 76, 342, 626
BspANI GGCC 2 cut(s) 330, 381
BspCNI CTCAG 2 cut(s) 111, 218
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 2 cut(s) 331, 370
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 71, 337, 634
BspT107I GGYRCC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 3 cut(s) 210, 511, 713
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 3 cut(s) 76, 342, 626
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 2 cut(s) 98, 205
BstF5I GGATG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 531
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 3 cut(s) 79, 345, 629
BstMBI GATC 3 cut(s) 76, 342, 626
BstMWI GCNNNNNNNGC 2 cut(s) 222, 674
BstNI CCWGG 1 cut(s) 559
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 151, 557
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 184, 458
BstV2I GAAGAC 2 cut(s) 316, 475
BstX2I RGATCY 2 cut(s) 342, 626
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 342, 626
BsuRI GGCC 2 cut(s) 330, 381
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 475
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 17, 329
Csp6I GTAC 2 cut(s) 268, 643
CviAII CATG 4 cut(s) 74, 217, 265, 487
CviQI GTAC 2 cut(s) 268, 643
DdeI CTNAG 2 cut(s) 98, 205
DpnI GATC 3 cut(s) 78, 344, 628
DpnII GATC 3 cut(s) 76, 342, 626
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 656
Eco130I CCWWGG 1 cut(s) 646
Eco147I AGGCCT 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 656
Eco72I CACGTG 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 4 cut(s) 77, 220, 268, 490
FatI CATG 4 cut(s) 73, 216, 264, 486
Fnu4HI GCNGC 2 cut(s) 173, 447
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 2 cut(s) 173, 447
FspBI CTAG 4 cut(s) 24, 236, 383, 726
GlaI GCGC 1 cut(s) 445
GluI GCNGC 2 cut(s) 173, 447
GsuI CTGGAG 2 cut(s) 541, 703
HaeIII GGCC 2 cut(s) 330, 381
HapII CCGG 4 cut(s) 145, 152, 169, 542
HhaI GCGC 1 cut(s) 446
Hin1II CATG 4 cut(s) 77, 220, 268, 490
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 1 cut(s) 438
HpaII CCGG 4 cut(s) 145, 152, 169, 542
HphI GGTGA 1 cut(s) 562
Hpy188I TCNGA 1 cut(s) 508
Hpy188III TCNNGA 4 cut(s) 230, 421, 682, 736
HpyAV CCTTC 5 cut(s) 47, 175, 298, 476, 485
HpyCH4IV ACGT 2 cut(s) 357, 459
HpyCH4V TGCA 3 cut(s) 260, 320, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 674
HpyF3I CTNAG 2 cut(s) 98, 205
HpySE526I ACGT 2 cut(s) 357, 459
Hsp92II CATG 4 cut(s) 77, 220, 268, 490
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 3 cut(s) 76, 342, 626
LmnI GCTCC 2 cut(s) 393, 684
Lsp1109I GCAGC 2 cut(s) 184, 458
MaeI CTAG 4 cut(s) 24, 236, 383, 726
MaeII ACGT 2 cut(s) 357, 459
MaeIII GTNAC 2 cut(s) 26, 425
MalI GATC 3 cut(s) 78, 344, 628
MboI GATC 3 cut(s) 76, 342, 626
MboII GAAGA 6 cut(s) 78, 241, 294, 316, 475, 713
MflI RGATCY 2 cut(s) 342, 626
MhlI GDGCHC 2 cut(s) 390, 658
MluI ACGCGT 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 8 cut(s) 194, 212, 237, 362, 371, 403, 460, 555
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 575
MspI CCGG 4 cut(s) 145, 152, 169, 542
MspR9I CCNGG 2 cut(s) 153, 559
MvaI CCWGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 222, 674
NciI CCSGG 1 cut(s) 153
NdeII GATC 3 cut(s) 76, 342, 626
NlaIII CATG 4 cut(s) 77, 220, 268, 490
NlaIV GGNNCC 2 cut(s) 331, 370
NmuCI GTSAC 2 cut(s) 26, 425
NspI RCATGY 1 cut(s) 268
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 1 cut(s) 381
PciI ACATGT 1 cut(s) 264
PfeI GAWTC 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 557
PkrI GCNGC 2 cut(s) 174, 448
PmaCI CACGTG 1 cut(s) 460
PmlI CACGTG 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 460
PscI ACATGT 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 557
PspCI CACGTG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 2 cut(s) 331, 370
PspPI GGNCC 2 cut(s) 17, 329
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 342, 626
RsaI GTAC 2 cut(s) 269, 644
RsaNI GTAC 2 cut(s) 268, 643
RseI CAYNNNNRTG 1 cut(s) 575
SacI GAGCTC 1 cut(s) 658
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 173, 447
Sau3AI GATC 3 cut(s) 76, 342, 626
Sau96I GGNCC 2 cut(s) 17, 329
ScrFI CCNGG 2 cut(s) 153, 559
SduI GDGCHC 2 cut(s) 390, 658
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SpeI ACTAGT 1 cut(s) 23
SseBI AGGCCT 1 cut(s) 381
SspI AATATT 1 cut(s) 743
SspMI CTAG 4 cut(s) 24, 236, 383, 726
SstI GAGCTC 1 cut(s) 658
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 151, 557
StyI CCWWGG 1 cut(s) 646
TaiI ACGT 2 cut(s) 360, 462
TaqI TCGA 3 cut(s) 408, 420, 518
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 2 cut(s) 26, 425
TseI GCWGC 2 cut(s) 172, 446
Tsp45I GTSAC 2 cut(s) 26, 425
TspDTI ATGAA 4 cut(s) 78, 147, 262, 475
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 1 cut(s) 268
XspI CTAG 4 cut(s) 24, 236, 383, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.