Rh1AG426800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005000
Physical Location & Seq
Reverse (-)
65535051 .. 65535824
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG426800.1

Sequence Viewer

Length: 774 bp
ATGTCAGGTGGAGTTGGTCCAACTGCAGACATTAGCCTTCCCAAAGAACAAGAACATGAGTTCAAAGAACACCATGACCCAATTTCGTCCTCAAAACTCAGCCCTAAAACTTCAAAGAGCCAAACCCCACACACCACCACTAACCGAAAACCAGGTTTGTTCTCCTTCCGGCAGCTCAATGCCCTCGCCGTCATCATTGTCCTCTCAGCCAGTGGCATGGTCAGCCCTCAAGACCTGGCCTTTGTTCTCTTCTCCATTGCCTACATGTACTTCATCTCAAAAGTTGCTTTCCCCATGCAATCTTCCACTAAAGACCCTCCAGTCTTCAGCCCCCAAAACAAGATCCTACGCCTCTATGTCCTCTTGGGTGCCATCATAGGCCTAGTACTCCCCATAGCTTACATCTTCGAGGGCATTTTCGAGGGTGACAAGCAAGGAATCAGCGCAGCCTCGCCACATGTTTTCCTTCTTGCAAGTCAAGTGTTCATGGAAGGGTTGGCTTTCACCGACAGGTTTTCGATCCCAATACGCGTTTTCGTGCCGGTTTTTTACAACTCCAGGAGAATTTTCACCATTGTGGAGTGGCTTACAAGTGAGTTTTCAAAAGGGTATGAAGAGTATGGTGGATCTGCTAAGAGATTATACCTTGGCAGAGTTCTTGCTATTGCTAATATGGCTTTTTGGTGCTTCAATCTTTTTGGGTTCTTATTGCCAGTATATCTACCTAGAGCTTTCAAGAAATATTACTCTACGCATAAGGTGAAAGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.88

Weight (kDa)

9.46

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7733 PF24867 54 - 249 1.7e-93 Domain of unknown function (DUF7733)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 1 cut(s) 531
AclWI GGATC 3 cut(s) 337, 514, 634
AcsI RAATTY 1 cut(s) 564
AcuI CTGAAG 1 cut(s) 310
AfaI GTAC 2 cut(s) 269, 387
AflIII ACRYGT 3 cut(s) 264, 457, 529
AgsI TTSAA 5 cut(s) 64, 114, 603, 691, 736
AjnI CCWGG 3 cut(s) 151, 234, 557
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 3 cut(s) 175, 398, 731
AluI AGCT 3 cut(s) 175, 398, 731
AlwI GGATC 3 cut(s) 337, 514, 634
AoxI GGCC 2 cut(s) 237, 379
ApeKI GCWGC 2 cut(s) 172, 446
ApoI RAATTY 1 cut(s) 564
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 446
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 4 cut(s) 437, 496, 562, 772
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 184, 458
BccI CCATC 1 cut(s) 380
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 3 cut(s) 153, 236, 559
BfaI CTAG 2 cut(s) 383, 726
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 173, 447
BlsI GCNGC 2 cut(s) 174, 448
BmcAI AGTACT 1 cut(s) 387
Bme1390I CCNGG 3 cut(s) 153, 236, 559
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 3 cut(s) 153, 236, 559
BpiI GAAGAC 1 cut(s) 316
BpmI CTGGAG 2 cut(s) 303, 541
BpuEI CTTGAG 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 646
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 3 cut(s) 210, 320, 713
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 3 cut(s) 153, 236, 559
BseDI CCNNGG 1 cut(s) 646
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 112, 219
BseNI ACTGG 3 cut(s) 210, 320, 713
BseXI GCAGC 2 cut(s) 184, 458
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 239, 381
BshNI GGYRCC 1 cut(s) 368
BsiSI CCGG 2 cut(s) 169, 542
BsnI GGCC 2 cut(s) 239, 381
Bsp143I GATC 3 cut(s) 342, 519, 626
BspANI GGCC 2 cut(s) 239, 381
BspCNI CTCAG 2 cut(s) 111, 218
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 3 cut(s) 337, 514, 634
BspT107I GGYRCC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 541
BsrI ACTGG 3 cut(s) 210, 320, 713
BssAI RCCGGY 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 3 cut(s) 342, 519, 626
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 3 cut(s) 153, 236, 559
Bst6I CTCTTC 2 cut(s) 254, 609
BstDEI CTNAG 3 cut(s) 98, 205, 633
BstFNI CGCG 1 cut(s) 531
BstHHI GCGC 1 cut(s) 446
BstKTI GATC 3 cut(s) 345, 522, 629
BstMBI GATC 3 cut(s) 342, 519, 626
BstMWI GCNNNNNNNGC 2 cut(s) 222, 674
BstNI CCWGG 3 cut(s) 153, 236, 559
BstNSI RCATGY 2 cut(s) 268, 461
BstSCI CCNGG 3 cut(s) 151, 234, 557
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 184, 458
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 2 cut(s) 342, 626
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 342, 626
BsuRI GGCC 2 cut(s) 239, 381
BtsIMutI CAGTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 151
Csp6I GTAC 2 cut(s) 268, 386
CviAII CATG 7 cut(s) 56, 74, 217, 265, 295, 458, 487
CviQI GTAC 2 cut(s) 268, 386
DdeI CTNAG 3 cut(s) 98, 205, 633
DpnI GATC 3 cut(s) 344, 521, 628
DpnII GATC 3 cut(s) 342, 519, 626
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 254, 609
EarI CTCTTC 2 cut(s) 254, 609
Eco130I CCWWGG 1 cut(s) 646
Eco147I AGGCCT 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 310
EcoRII CCWGG 3 cut(s) 151, 234, 557
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 7 cut(s) 59, 77, 220, 268, 298, 461, 490
FatI CATG 7 cut(s) 55, 73, 216, 264, 294, 457, 486
Fnu4HI GCNGC 2 cut(s) 173, 447
Fsp4HI GCNGC 2 cut(s) 173, 447
FspBI CTAG 2 cut(s) 383, 726
GlaI GCGC 1 cut(s) 445
GluI GCNGC 2 cut(s) 173, 447
GsuI CTGGAG 2 cut(s) 303, 541
HaeIII GGCC 2 cut(s) 239, 381
HapII CCGG 2 cut(s) 169, 542
HhaI GCGC 1 cut(s) 446
Hin1II CATG 7 cut(s) 59, 77, 220, 268, 298, 461, 490
Hin6I GCGC 1 cut(s) 444
HinP1I GCGC 1 cut(s) 444
HinfI GANTC 1 cut(s) 438
HpaII CCGG 2 cut(s) 169, 542
HphI GGTGA 4 cut(s) 437, 496, 562, 772
Hpy188III TCNNGA 2 cut(s) 230, 736
HpyAV CCTTC 4 cut(s) 47, 175, 476, 485
HpyCH4V TGCA 3 cut(s) 26, 298, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 674
HpyF3I CTNAG 3 cut(s) 98, 205, 633
Hsp92II CATG 7 cut(s) 59, 77, 220, 268, 298, 461, 490
HspAI GCGC 1 cut(s) 444
Kzo9I GATC 3 cut(s) 342, 519, 626
Lsp1109I GCAGC 2 cut(s) 184, 458
MabI ACCWGGT 1 cut(s) 151
MaeI CTAG 2 cut(s) 383, 726
MaeIII GTNAC 1 cut(s) 425
MalI GATC 3 cut(s) 344, 521, 628
MboI GATC 3 cut(s) 342, 519, 626
MboII GAAGA 5 cut(s) 241, 294, 316, 397, 626
MflI RGATCY 2 cut(s) 342, 626
MluCI AATT 2 cut(s) 81, 564
MluI ACGCGT 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 575
MspI CCGG 2 cut(s) 169, 542
MspR9I CCNGG 3 cut(s) 153, 236, 559
MvaI CCWGG 3 cut(s) 153, 236, 559
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 222, 674
NdeII GATC 3 cut(s) 342, 519, 626
NlaIII CATG 7 cut(s) 59, 77, 220, 268, 298, 461, 490
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 2 cut(s) 268, 461
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 1 cut(s) 381
PciI ACATGT 2 cut(s) 264, 457
PfeI GAWTC 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 557
PkrI GCNGC 2 cut(s) 174, 448
PscI ACATGT 2 cut(s) 264, 457
Psp6I CCWGG 3 cut(s) 151, 234, 557
PspGI CCWGG 3 cut(s) 151, 234, 557
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 2 cut(s) 342, 626
RsaI GTAC 2 cut(s) 269, 387
RsaNI GTAC 2 cut(s) 268, 386
RseI CAYNNNNRTG 1 cut(s) 575
SatI GCNGC 2 cut(s) 173, 447
Sau3AI GATC 3 cut(s) 342, 519, 626
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 387
ScrFI CCNGG 3 cut(s) 153, 236, 559
SexAI ACCWGGT 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 2 cut(s) 81, 564
SseBI AGGCCT 1 cut(s) 381
SspI AATATT 2 cut(s) 743, 770
SspMI CTAG 2 cut(s) 383, 726
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 151, 234, 557
StyI CCWWGG 1 cut(s) 646
TaqI TCGA 3 cut(s) 408, 420, 518
TasI AATT 2 cut(s) 81, 564
TatI WGTACW 2 cut(s) 267, 385
TfiI GAWTC 1 cut(s) 438
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 2 cut(s) 172, 446
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 3 cut(s) 262, 475, 627
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 564
XceI RCATGY 2 cut(s) 268, 461
XspI CTAG 2 cut(s) 383, 726
ZrmI AGTACT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.