Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005000

Physical Location & Seq

Genomic Coordinates Forward (+)

28764590 .. 28765909

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G297800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCAGGTGGGGTTGGTCCAACTTGCAATGACATAAGCCTGCCAAAAGAACAAGAACATGAATTCAAAGAACACCATGACCCAGCTTCCTCAAAGCTCAGCCCCGGCCAAAAGCCCTCAGTCCAACGCAAACCCGGTTTGTTCTCCTTCCGGCAGCTCAACGCCCTGGCAGTCATCGTTGTCCTCGCGGCCAGCGGCATGGTAAGCCCTACAGACTTTGCTTTCGTTCTCTTCTCCATGATCTACATCCACTTCATCTCCAAAGTTGCTTTCCCCACAACCCTCAATTCTCCTAAAGACCCTGCAGTGTTTAACCCTCAAAACAAGATTCTGCGCCTCTATGTTCTCGTGGGAGCCATCGTAGGCCTTTTGCTGCCCATAGCTTATATACTTGAGGGCATTGTGGAGGGTGACAAAGAAGGCATCAGCGCTGCTTCCCCACATGTTTTCCTTCTTGCCAGTCAAGTGTTCATGGAAGGAGTGGCTTTCACTGACAGGTTTTCGACCCCTATACGCGTTTTCGTGCCGGTTTTCTATAATTCCAGGAGGATTTTCACCATTGTGGAGTGGCTCAGAAGTGAGTTTTCCAAAGAGTATGAAGAGTATGGTGGATCTGCAAAGAGATTGTATCTTGGGAGAGGGCTTGCAATTGCTAACATGGCCTTTTGGTGCTTCAACCTTTTTGGGTTCTTATTGCCTGTTTATCTTCCTAGAGCTTTCAAGAAATATTACTCTCTGCAAAAAGTGAAAGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.25

Weight (kDa)

9.22

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52420
fragaria_vesca	FvH4_7g29870 FvH4_7g29880
malus_domestica	MD01G1205200.v1.1 MD07G1273600.v1.1 MD07G1273700.v1.1 MD07G1273800.v1.1
prunus_persica	Prupe.2G297600_v2.0.a1 Prupe.2G297700_v2.0.a1 Prupe.2G297800_v2.0.a1
pyrus_communis	pycom07g25020 pycom07g25030
rosa_chinensis	RchiOBHm_Chr1g0377831 RchiOBHm_Chr1g0377841
rosa_laevigata	RLG00000026493 RLG00000026494
rosa_multiflora	Rmu_sc0004824.1_g000007
rosa_roxburghii	Rroxscaffold_4G00281010 Rroxscaffold_4G00281020
rosa_rugosa	Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG426800 Rh1AG426900 Rh1BG382400 Rh1BG382500 Rh1CG396300 Rh1CG396400 Rh1DG413400 Rh1DG413500
rosa_wichuraiana	Rw1G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	188, 516
AciI	CCGC	2 cut(s)	188, 195
AclWI	GGATC	1 cut(s)	619
AcoI	YGGCCR	2 cut(s)	106, 189
AcsI	RAATTY	1 cut(s)	62
AfeI	AGCGCT	1 cut(s)	430
AflIII	ACRYGT	2 cut(s)	442, 514
AgsI	TTSAA	3 cut(s)	67, 676, 721
AjnI	CCWGG	2 cut(s)	165, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AleI	CACNNNNGTG	1 cut(s)	560
AluBI	AGCT	5 cut(s)	86, 97, 157, 383, 716
AluI	AGCT	5 cut(s)	86, 97, 157, 383, 716
AlwI	GGATC	1 cut(s)	619
Aor51HI	AGCGCT	1 cut(s)	430
AoxI	GGCC	4 cut(s)	106, 189, 364, 660
ApeKI	GCWGC	3 cut(s)	154, 373, 431
ApoI	RAATTY	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	2 cut(s)	336, 431
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	2 cut(s)	105, 135
AsuHPI	GGTGA	2 cut(s)	422, 547
AvaII	GGWCC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	166, 360, 418
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	2 cut(s)	167, 544
BcnI	CCSGG	2 cut(s)	105, 135
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	2 cut(s)	210, 303
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	5 cut(s)	155, 189, 196, 374, 432
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	5 cut(s)	156, 190, 197, 375, 433
Bme1390I	CCNGG	4 cut(s)	105, 135, 167, 544
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	4 cut(s)	105, 135, 167, 544
BmsI	GCATC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	105, 135
BsaBI	GATNNNNATC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	103, 165
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 345, 375
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	167, 544
BseDI	CCNNGG	2 cut(s)	103, 165
BseGI	GGATG	1 cut(s)	246
BseJI	GATNNNNATC	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	112, 132, 586
BseNI	ACTGG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	166, 360, 418
BseYI	CCCAGC	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	188, 516
BshFI	GGCC	4 cut(s)	108, 191, 366, 662
BsiSI	CCGG	4 cut(s)	105, 135, 151, 527
BsnI	GGCC	4 cut(s)	108, 191, 366, 662
Bsp143I	GATC	2 cut(s)	240, 611
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	2 cut(s)	188, 195
BspANI	GGCC	4 cut(s)	108, 191, 366, 662
BspCNI	CTCAG	3 cut(s)	111, 131, 585
BspFNI	CGCG	2 cut(s)	188, 516
BspLI	GGNNCC	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	103, 165
BssMI	GATC	2 cut(s)	240, 611
BssSI	CACGAG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	347
Bst2UI	CCWGG	2 cut(s)	167, 544
Bst6I	CTCTTC	2 cut(s)	236, 594
BstC8I	GCNNGC	3 cut(s)	41, 193, 645
BstDEI	CTNAG	3 cut(s)	98, 118, 572
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	2 cut(s)	188, 516
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	336, 431
BstKTI	GATC	2 cut(s)	243, 614
BstMBI	GATC	2 cut(s)	240, 611
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 659
BstNI	CCWGG	2 cut(s)	167, 544
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	4 cut(s)	103, 133, 165, 542
BstSFI	CTRYAG	2 cut(s)	210, 303
BstUI	CGCG	2 cut(s)	188, 516
BstV1I	GCAGC	3 cut(s)	166, 360, 418
BstX2I	RGATCY	1 cut(s)	611
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	611
BsuRI	GGCC	4 cut(s)	108, 191, 366, 662
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	312, 489
Cac8I	GCNNGC	3 cut(s)	41, 193, 645
CfoI	GCGC	2 cut(s)	336, 431
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	17
CviAII	CATG	7 cut(s)	59, 77, 199, 238, 443, 472, 658
DdeI	CTNAG	3 cut(s)	98, 118, 572
DpnI	GATC	2 cut(s)	242, 613
DpnII	GATC	2 cut(s)	240, 611
EaeI	YGGCCR	2 cut(s)	106, 189
Eam1104I	CTCTTC	2 cut(s)	236, 594
EarI	CTCTTC	2 cut(s)	236, 594
Eco147I	AGGCCT	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	165, 542
FaeI	CATG	7 cut(s)	62, 80, 202, 241, 446, 475, 661
FatI	CATG	7 cut(s)	58, 76, 198, 237, 442, 471, 657
Fnu4HI	GCNGC	5 cut(s)	155, 189, 196, 374, 432
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	5 cut(s)	155, 189, 196, 374, 432
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	2 cut(s)	335, 430
GluI	GCNGC	5 cut(s)	155, 189, 196, 374, 432
GsaI	CCCAGC	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	108, 191, 366, 662
HapII	CCGG	4 cut(s)	105, 135, 151, 527
HhaI	GCGC	2 cut(s)	336, 431
Hin1II	CATG	7 cut(s)	62, 80, 202, 241, 446, 475, 661
Hin6I	GCGC	2 cut(s)	334, 429
HinP1I	GCGC	2 cut(s)	334, 429
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	4 cut(s)	105, 135, 151, 527
HphI	GGTGA	2 cut(s)	422, 547
Hpy188I	TCNGA	1 cut(s)	575
Hpy188III	TCNNGA	1 cut(s)	721
HpyAV	CCTTC	4 cut(s)	157, 413, 461, 470
HpyCH4V	TGCA	5 cut(s)	27, 305, 617, 647, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 659
HpyF3I	CTNAG	3 cut(s)	98, 118, 572
Hsp92II	CATG	7 cut(s)	62, 80, 202, 241, 446, 475, 661
HspAI	GCGC	2 cut(s)	334, 429
Kzo9I	GATC	2 cut(s)	240, 611
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	3 cut(s)	166, 360, 418
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	711
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	242, 613
MboI	GATC	2 cut(s)	240, 611
MboII	GAAGA	3 cut(s)	223, 611, 698
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	611
MluCI	AATT	4 cut(s)	62, 286, 538, 648
MluI	ACGCGT	1 cut(s)	514
MmeI	TCCRAC	2 cut(s)	44, 148
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	4 cut(s)	105, 135, 151, 527
MspR9I	CCNGG	4 cut(s)	105, 135, 167, 544
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	2 cut(s)	167, 544
MvnI	CGCG	2 cut(s)	188, 516
MwoI	GCNNNNNNNGC	2 cut(s)	204, 659
NciI	CCSGG	2 cut(s)	105, 135
NdeII	GATC	2 cut(s)	240, 611
NlaIII	CATG	7 cut(s)	62, 80, 202, 241, 446, 475, 661
NlaIV	GGNNCC	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	366
PciI	ACATGT	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	156, 190, 197, 375, 433
PscI	ACATGT	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	165, 542
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	2 cut(s)	165, 542
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	611
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	5 cut(s)	155, 189, 196, 374, 432
Sau3AI	GATC	2 cut(s)	240, 611
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	4 cut(s)	105, 135, 167, 544
SetI	ASST	8 cut(s)	10, 88, 99, 159, 385, 500, 681, 718
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	2 cut(s)	210, 303
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	4 cut(s)	62, 286, 538, 648
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	2 cut(s)	188, 195
SspI	AATATT	2 cut(s)	728, 755
SspMI	CTAG	1 cut(s)	711
StuI	AGGCCT	1 cut(s)	366
StyD4I	CCNGG	4 cut(s)	103, 133, 165, 542
TaqI	TCGA	1 cut(s)	503
TasI	AATT	4 cut(s)	62, 286, 538, 648
TauI	GCSGC	2 cut(s)	191, 198
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	2 cut(s)	312, 496
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	154, 373, 431
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	75, 244, 460, 612
TspRI	CASTG	2 cut(s)	312, 496
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.