Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

23723404 .. 23725585

Gene Structure 2182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G58730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACGTTGAATCCTCCTCCGTCGCAGCAAACGTCTCACTCGCCGCGTCGGATTCCCAATCGCCGCGTTCTCATCGTCGGAAATTATTGCCACGACGTTTTAATCCAAAACGGATCCGTCGTAGCTGAAACTCTCGGCGGCGCCGCCTCTTTCATATCTAATGTCTTAGATTCTTCCTCTGTCTCCTGCGATTTGGTCTCCAAAGTAGGACACGACTTCAGATACGAGGTCACCCACTCTCCGATCGTGGCTCCGGAGAAGGAAACAACAGTTTTCGAGGCGTATTTCGATCTGGGAATCGATGGGATCGGTCATGCTGATCGGGTGTTGAAAAGAGTCTCTGCATGTGATCCGATTCTTCCTTCGGATATACCCGATTCGAGATTTGATTTCGGAATGGCCGTTGGAGTCGGCGGCGAGATTTTACCGGAGACGCTTGAGAAAATGGTGGAGATCTGTGACGTTGTTGCTGTGGATATTCAAGCTTTGATTAGGGTTTTTGATCCTGTTGACGGAGCTGTGAAGCTTGTTGATTTGAAAGAAAGTGGATTTTATCACATCTTGCATCGAATTGGATTCTTGAAAGCTTCGTCAGACGAAGCTCTTTTCATGGATGTTGAACAAATGAAGCACTTGTGTTGTGTGGTGGTGACTAATGGTGAAAAAGGGTGTAGGATTTATCATAAGGATGATGAAATGACGGTTCCTCCGTTCTTGGCGAAGCAGGTGGATCCTACCGGTGCCGGAGACAGCTTTCTCGGAGGTTTGATTGTTGGGCTTGTTGAAGGTTTGACTGTTCCTGATGCTGCATTGTTAGGGAACCTCTTTGGTTCCATCACTGTAGAGCATATTGGTCAGCCAAAGTTCGATTTGATGATGCTTCAGAAAGTCAAGGATGAGGTACAGAGAAGGAAGAAGCAGTGTAACATATCTAGCAGCCATAACAACGATCACAACGAGTTCCATGAGCGTCTAAGTCCAGCTCGGTTTTCATGCGTAGACTCTCAACTTCAACCAAAGTTATTGGTCAATGGTCACTCTTGTGATGATCGGTCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

353

Amino Acids

38.65

Weight (kDa)

5.34

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	214 - 285	7e-20	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	715
Acc36I	ACCTGC	1 cut(s)	715
AccB1I	GGYRCC	2 cut(s)	140, 740
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	2 cut(s)	46, 66
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	5 cut(s)	44, 64, 138, 144, 414
AclWI	GGATC	7 cut(s)	108, 121, 314, 344, 497, 725, 738
AcoI	YGGCCR	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	202, 866
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	903
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgeI	ACCGGT	1 cut(s)	737
AgsI	TTSAA	8 cut(s)	10, 331, 482, 538, 583, 620, 785, 1013
AleI	CACNNNNGTG	1 cut(s)	1041
AluBI	AGCT	8 cut(s)	125, 485, 518, 526, 587, 602, 753, 983
AluI	AGCT	8 cut(s)	125, 485, 518, 526, 587, 602, 753, 983
Alw26I	GTCTC	6 cut(s)	39, 187, 202, 343, 425, 741
AlwI	GGATC	7 cut(s)	108, 121, 314, 344, 497, 725, 738
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	25, 806, 936
AsiGI	ACCGGT	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	1053
AsuHPI	GGTGA	3 cut(s)	223, 661, 671
AvaII	GGWCC	1 cut(s)	1053
BamHI	GGATCC	2 cut(s)	113, 730
BanI	GGYRCC	2 cut(s)	140, 740
BbvI	GCAGC	3 cut(s)	37, 793, 948
BccI	CCATC	2 cut(s)	296, 842
BceAI	ACGGC	1 cut(s)	386
BcoDI	GTCTC	6 cut(s)	39, 187, 202, 343, 425, 741
BfaI	CTAG	1 cut(s)	933
BfmI	CTRYAG	1 cut(s)	840
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	715
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	8 cut(s)	26, 44, 64, 139, 144, 415, 807, 937
BlsI	GCNGC	8 cut(s)	27, 45, 65, 140, 145, 416, 808, 938
Bme18I	GGWCC	1 cut(s)	1053
BmgT120I	GGNCC	1 cut(s)	1053
BmiI	GGNNCC	9 cut(s)	115, 142, 252, 705, 732, 742, 821, 832, 1055
BmsI	GCATC	3 cut(s)	574, 793, 867
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	202
BsaWI	WCCGGW	3 cut(s)	253, 427, 737
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 691, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse118I	RCCGGY	1 cut(s)	737
BseAI	TCCGGA	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	300
BseGI	GGATG	3 cut(s)	619, 694, 901
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	37, 793, 948
Bsh1236I	CGCG	2 cut(s)	46, 66
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	2 cut(s)	140, 740
BshTI	ACCGGT	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	254, 428, 738, 744
BslFI	GGGAC	1 cut(s)	1039
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	6 cut(s)	39, 187, 202, 343, 425, 741
BsmBI	CGTCTC	2 cut(s)	39, 425
BsmFI	GGGAC	1 cut(s)	1039
BsnI	GGCC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	253
BspACI	CCGC	5 cut(s)	44, 64, 138, 144, 414
BspANI	GGCC	1 cut(s)	401
BspDI	ATCGAT	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	46, 66
BspLI	GGNNCC	9 cut(s)	115, 142, 252, 705, 732, 742, 821, 832, 1055
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	7 cut(s)	108, 121, 314, 344, 497, 725, 738
BspT107I	GGYRCC	2 cut(s)	140, 740
BspTNI	GGTCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	737
BssAI	RCCGGY	1 cut(s)	737
BssNI	GRCGYC	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	271, 703, 796, 841
BstACI	GRCGYC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	166, 974
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	619, 694, 901
BstFNI	CGCG	2 cut(s)	46, 66
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstMAI	GTCTC	6 cut(s)	39, 187, 202, 343, 425, 741
BstMCI	CGRYCG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	2 cut(s)	46, 66
BstV1I	GCAGC	3 cut(s)	37, 793, 948
BstX2I	RGATCY	3 cut(s)	113, 453, 730
BstYI	RGATCY	3 cut(s)	113, 453, 730
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	401
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	619, 694, 901
BtsI	GCAGTG	1 cut(s)	926
BtsIMutI	CAGTG	2 cut(s)	837, 926
BveI	ACCTGC	1 cut(s)	715
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	1053
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	3 cut(s)	35, 442, 959
Csp6I	GTAC	1 cut(s)	902
CspAI	ACCGGT	1 cut(s)	737
CviAII	CATG	5 cut(s)	314, 345, 610, 965, 993
CviQI	GTAC	1 cut(s)	902
DdeI	CTNAG	2 cut(s)	166, 974
DinI	GGCGCC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	1053
Eco57I	CTGAAG	2 cut(s)	202, 866
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
Esp3I	CGTCTC	2 cut(s)	39, 425
FaeI	CATG	5 cut(s)	317, 348, 613, 968, 996
FaqI	GGGAC	1 cut(s)	1039
FatI	CATG	5 cut(s)	313, 344, 609, 964, 992
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	8 cut(s)	26, 44, 64, 139, 144, 415, 807, 937
FokI	GGATG	3 cut(s)	626, 701, 908
Fsp4HI	GCNGC	8 cut(s)	26, 44, 64, 139, 144, 415, 807, 937
FspBI	CTAG	1 cut(s)	933
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	8 cut(s)	26, 44, 64, 139, 144, 415, 807, 937
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	4 cut(s)	254, 428, 738, 744
HgaI	GACGC	3 cut(s)	35, 442, 959
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	317, 348, 613, 968, 996
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	3 cut(s)	483, 524, 585
HpaII	CCGG	4 cut(s)	254, 428, 738, 744
HphI	GGTGA	3 cut(s)	223, 661, 671
Hpy166II	GTNNAC	2 cut(s)	511, 1000
Hpy188III	TCNNGA	4 cut(s)	254, 381, 580, 800
Hpy8I	GTNNAC	2 cut(s)	511, 1000
Hpy99I	CGWCG	5 cut(s)	25, 51, 80, 98, 122
HpyAV	CCTTC	4 cut(s)	253, 372, 779, 903
HpyCH4III	ACNGT	4 cut(s)	271, 703, 796, 841
HpyCH4IV	ACGT	4 cut(s)	5, 32, 96, 462
HpyCH4V	TGCA	3 cut(s)	344, 565, 809
HpyF3I	CTNAG	2 cut(s)	166, 974
HpySE526I	ACGT	4 cut(s)	5, 32, 96, 462
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	5 cut(s)	317, 348, 613, 968, 996
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	256, 515
Lsp1109I	GCAGC	3 cut(s)	37, 793, 948
LweI	GCATC	3 cut(s)	574, 793, 867
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	4 cut(s)	5, 32, 96, 462
MaeIII	GTNAC	5 cut(s)	229, 458, 649, 923, 1034
MboII	GAAGA	3 cut(s)	165, 350, 925
MflI	RGATCY	3 cut(s)	113, 453, 730
MluCI	AATT	2 cut(s)	82, 570
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	3 cut(s)	345, 417, 995
MmeI	TCCRAC	3 cut(s)	29, 58, 385
MroI	TCCGGA	1 cut(s)	253
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	687, 1041
MspI	CCGG	4 cut(s)	254, 428, 738, 744
MvnI	CGCG	2 cut(s)	46, 66
NarI	GGCGCC	1 cut(s)	141
NlaIII	CATG	5 cut(s)	317, 348, 613, 968, 996
NlaIV	GGNNCC	9 cut(s)	115, 142, 252, 705, 732, 742, 821, 832, 1055
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	4 cut(s)	229, 458, 649, 1034
NspI	RCATGY	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	1041
PaqCI	CACCTGC	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	5 cut(s)	29, 117, 399, 707, 954
PfeI	GAWTC	7 cut(s)	10, 52, 170, 297, 355, 377, 576
PinAI	ACCGGT	1 cut(s)	737
PkrI	GCNGC	8 cut(s)	27, 45, 65, 140, 145, 416, 808, 938
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	3 cut(s)	344, 416, 995
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	3 cut(s)	344, 416, 995
PspEI	GGTNACC	1 cut(s)	229
PspN4I	GGNNCC	9 cut(s)	115, 142, 252, 705, 732, 742, 821, 832, 1055
PspPI	GGNCC	1 cut(s)	1053
PsuI	RGATCY	3 cut(s)	113, 453, 730
PvuI	CGATCG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	903
RsaNI	GTAC	1 cut(s)	902
RseI	CAYNNNNRTG	2 cut(s)	687, 1041
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	8 cut(s)	26, 44, 64, 139, 144, 415, 807, 937
Sau96I	GGNCC	1 cut(s)	1053
SchI	GAGTC	3 cut(s)	345, 417, 995
SfaNI	GCATC	3 cut(s)	574, 793, 867
SfcI	CTRYAG	1 cut(s)	840
SfoI	GGCGCC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	1053
SmiMI	CAYNNNNRTG	2 cut(s)	687, 1041
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	82, 570
SsiI	CCGC	5 cut(s)	44, 64, 138, 144, 414
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	933
TaaI	ACNGT	4 cut(s)	271, 703, 796, 841
TaiI	ACGT	4 cut(s)	8, 35, 99, 465
TaqI	TCGA	6 cut(s)	276, 288, 300, 380, 568, 867
TaqII	GACCGA	2 cut(s)	299, 1041
TasI	AATT	2 cut(s)	82, 570
TauI	GCSGC	5 cut(s)	46, 66, 141, 146, 417
TfiI	GAWTC	7 cut(s)	10, 52, 170, 297, 355, 377, 576
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	844, 926
TseFI	GTSAC	4 cut(s)	229, 458, 649, 1034
TseI	GCWGC	3 cut(s)	25, 806, 936
Tsp45I	GTSAC	4 cut(s)	229, 458, 649, 1034
TspDTI	ATGAA	5 cut(s)	142, 598, 641, 708, 981
TspGWI	ACGGA	5 cut(s)	9, 106, 126, 528, 699
TspRI	CASTG	2 cut(s)	844, 926
VpaK11BI	GGWCC	1 cut(s)	1053
XceI	RCATGY	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.