Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022597.1

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Forward (+)

15920 .. 16431

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022597.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggatcacgaatcccaatccaccccttatgggagaaaccgaacccagcccatttcctcccctcgccggtgcctgattgccggaaactactgccacgacattctcatccgtgactgcgtcgttttggccgagatgttcggcggggccgcttctttcatctccaacgtgttcgacggcgtttccgtgagctacaatctgactactctgtcccacgcgcattttgattctggaatcgaaggggaaggccagcaggatcgggttctgaagcaggtggcctgcgacccgatttgcccctctgatctgctcgaatccaggtttgatttcggaatggcaattggggtcggcggcgagattacggtggagacggttgagaacgggtggagatttgcggcactgtgtttgtggacattcaagctctatttcgggtttttgatggggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

147

Amino Acids

16.21

Weight (kDa)

4.89

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
AasI	GACNNNNNNGTC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	1 cut(s)	215
AciI	CCGC	4 cut(s)	141, 147, 345, 389
AclWI	GGATC	2 cut(s)	12, 261
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	30, 66
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	2 cut(s)	189, 415
AluI	AGCT	2 cut(s)	189, 415
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	2 cut(s)	12, 261
AoxI	GGCC	4 cut(s)	126, 144, 244, 273
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	69
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	3 cut(s)	147, 346, 390
BlsI	GCNGC	3 cut(s)	148, 347, 391
Bme1390I	CCNGG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	71, 145
BmrFI	CCNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 66
Bse118I	RCCGGY	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	30, 66
BseYI	CCCAGC	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	128, 146, 246, 275
BshNI	GGYRCC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	67, 81
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	30, 66
BsmAI	GTCTC	1 cut(s)	356
BsmBI	CGTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	128, 146, 246, 275
Bsp143I	GATC	3 cut(s)	4, 253, 298
BspACI	CCGC	4 cut(s)	141, 147, 345, 389
BspANI	GGCC	4 cut(s)	128, 146, 246, 275
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	71, 145
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	12, 261
BspT107I	GGYRCC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	3 cut(s)	4, 253, 298
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	3 cut(s)	358, 367, 396
BstC8I	GCNNGC	2 cut(s)	248, 277
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	7, 256, 301
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	3 cut(s)	4, 253, 298
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	215
BsuRI	GGCC	4 cut(s)	128, 146, 246, 275
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	392
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	248, 277
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	1 cut(s)	106
CviJI	RGCY	8 cut(s)	49, 128, 146, 189, 246, 275, 415, 439
CviKI_1	RGCY	8 cut(s)	49, 128, 146, 189, 246, 275, 415, 439
DpnI	GATC	3 cut(s)	6, 255, 300
DpnII	GATC	3 cut(s)	4, 253, 298
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	356
FaiI	YATR	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	193
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	147, 346, 390
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	147, 346, 390
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	3 cut(s)	147, 346, 390
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	4 cut(s)	128, 146, 246, 275
HapII	CCGG	2 cut(s)	67, 81
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	4 cut(s)	11, 224, 231, 308
HpaII	CCGG	2 cut(s)	67, 81
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	4 cut(s)	198, 264, 298, 326
Hpy188III	TCNNGA	2 cut(s)	8, 228
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	2 cut(s)	122, 176
HpyAV	CCTTC	2 cut(s)	230, 236
HpyCH4III	ACNGT	3 cut(s)	358, 367, 396
HpyCH4IV	ACGT	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	165
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	4, 253, 298
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	6, 255, 300
MboI	GATC	3 cut(s)	4, 253, 298
MfeI	CAATTG	1 cut(s)	333
MluCI	AATT	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	3 cut(s)	67, 72, 304
MspI	CCGG	2 cut(s)	67, 81
MspR9I	CCNGG	1 cut(s)	313
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	313
MvnI	CGCG	1 cut(s)	215
NdeII	GATC	3 cut(s)	4, 253, 298
NlaIV	GGNNCC	2 cut(s)	71, 145
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 180
PfeI	GAWTC	4 cut(s)	11, 224, 231, 308
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	148, 347, 391
Psp6I	CCWGG	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	71, 145
PspPI	GGNCC	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	116
SatI	GCNGC	3 cut(s)	147, 346, 390
Sau3AI	GATC	3 cut(s)	4, 253, 298
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	5 cut(s)	168, 191, 273, 317, 417
SgrAI	CRCCGGYG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	4 cut(s)	141, 147, 345, 389
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	3 cut(s)	358, 367, 396
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	171, 234, 306
TasI	AATT	1 cut(s)	333
TauI	GCSGC	3 cut(s)	149, 348, 392
TfiI	GAWTC	4 cut(s)	11, 224, 231, 308
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	145
TspGWI	ACGGA	2 cut(s)	98, 172
TspRI	CASTG	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.