Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006422.1

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

90392 .. 92994

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006422.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgcttggcggggccgcttctttcatctccaacgtgttcgacggcgtttccgtgagctacaatctggtatcgaaagtcgggtcgaattttgcttactcggtccaccgcgacccaattgtggtatccgattgcaggacgactctgtcccacgctcattttgattctggaatcgagggggaaggccagcaggatcgggttctgaagcgggtggcctgcgacccgatttgcccctcggatctgcccgaatccatgtttgatttcggaatggcaattggggtcggcggcgagattacggtggagacagttgagaactggtggagatttgcggcactgtacttctgtgttgcagactacagagctccttctagtcctgcaggctactcctgcaaaaggcctgaaaatgttatggtagatgatttcgtatactcgggcctaggcattgctggtgacacctcaaacattgcaagaggtgcaattaccccagggtgcgataatgaggttcctggtttgaatggccttggcatttcaatggctcgtatagacttggcacccggtgggatcggaacacgtacggtgtatctgcaaactatgaagagtggtgatatgtttgttatccctcaagcgttaatgcatttctttgtgaatattggaggtgctaaaccagtccttgcatttgctagctacagtagtgcaacgctacatattcagggtgtggacaatgcactatttggaagcaaatttcccactcaattgatagctaacactactttccttgacatttctgagataaggaaactgaaggctgtctttggtggcactaatttaggcatcgatctcttcacgatgttagtgttagtgcgagtctttgttccctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

292

Amino Acids

31.27

Weight (kDa)

5.18

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	108
AciI	CCGC	6 cut(s)	9, 15, 106, 205, 282, 326
AclWI	GGATC	3 cut(s)	198, 243, 566
AcsI	RAATTY	2 cut(s)	85, 737
AcuI	CTGAAG	2 cut(s)	221, 818
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	2 cut(s)	335, 571
AfiI	CCNNNNNNNGG	3 cut(s)	118, 132, 390
AflIII	ACRYGT	2 cut(s)	33, 566
AgsI	TTSAA	2 cut(s)	511, 528
AjnI	CCWGG	2 cut(s)	481, 502
AluBI	AGCT	4 cut(s)	57, 359, 681, 758
AluI	AGCT	4 cut(s)	57, 359, 681, 758
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	198, 243, 566
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	6 cut(s)	12, 181, 210, 392, 430, 514
ApoI	RAATTY	2 cut(s)	85, 737
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspA2I	CCTAGG	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	12, 100, 430
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	458, 611
AsuNHI	GCTAGC	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	100
AvrII	CCTAGG	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	483, 504
BciVI	GTATCC	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	3 cut(s)	366, 434, 678
BfmI	CTRYAG	3 cut(s)	352, 372, 682
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	15, 283, 327
BlnI	CCTAGG	1 cut(s)	433
BlsI	GCNGC	3 cut(s)	16, 284, 328
Bme1390I	CCNGG	3 cut(s)	483, 504, 552
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	3 cut(s)	12, 100, 430
BmiI	GGNNCC	3 cut(s)	13, 501, 549
BmrFI	CCNGG	3 cut(s)	483, 504, 552
BmsI	GCATC	1 cut(s)	837
BmtI	GCTAGC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	552
Bsa29I	ATCGAT	1 cut(s)	831
BsaAI	YACGTR	1 cut(s)	569
BsaJI	CCNNGG	5 cut(s)	231, 433, 481, 482, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 132, 390
Bse1I	ACTGG	2 cut(s)	317, 662
Bse3DI	GCAATG	2 cut(s)	438, 459
BseBI	CCWGG	2 cut(s)	483, 504
BseCI	ATCGAT	1 cut(s)	831
BseDI	CCNNGG	5 cut(s)	231, 433, 481, 482, 517
BseLI	CCNNNNNNNGG	3 cut(s)	118, 132, 390
BseMI	GCAATG	2 cut(s)	438, 459
BseMII	CTCAG	1 cut(s)	774
BseNI	ACTGG	2 cut(s)	317, 662
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	6 cut(s)	14, 183, 212, 394, 432, 516
BshNI	GGYRCC	1 cut(s)	547
BshVI	ATCGAT	1 cut(s)	831
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	552
BsiWI	CGTACG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	3 cut(s)	118, 132, 390
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	6 cut(s)	14, 183, 212, 394, 432, 516
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	190, 235, 558, 832
BspACI	CCGC	6 cut(s)	9, 15, 106, 205, 282, 326
BspANI	GGCC	6 cut(s)	14, 183, 212, 394, 432, 516
BspCNI	CTCAG	1 cut(s)	775
BspDI	ATCGAT	1 cut(s)	831
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	13, 501, 549
BspMAI	CTGCAG	1 cut(s)	376
BspOI	GCTAGC	1 cut(s)	681
BspPI	GGATC	3 cut(s)	198, 243, 566
BspT107I	GGYRCC	1 cut(s)	547
BsrDI	GCAATG	2 cut(s)	438, 459
BsrI	ACTGG	2 cut(s)	317, 662
BssECI	CCNNGG	5 cut(s)	231, 433, 481, 482, 517
BssMI	GATC	4 cut(s)	190, 235, 558, 832
BssNAI	GTATAC	1 cut(s)	424
BssT1I	CCWWGG	2 cut(s)	433, 517
Bst1107I	GTATAC	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	483, 504
Bst4CI	ACNGT	5 cut(s)	295, 304, 333, 574, 686
Bst6I	CTCTTC	2 cut(s)	587, 842
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	185, 214, 376, 679
BstDEI	CTNAG	1 cut(s)	783
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	4 cut(s)	193, 238, 561, 835
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	190, 235, 558, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 470
BstNI	CCWGG	2 cut(s)	483, 504
BstSCI	CCNGG	3 cut(s)	481, 502, 550
BstSFI	CTRYAG	3 cut(s)	352, 372, 682
BstUI	CGCG	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	831
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	6 cut(s)	14, 183, 212, 394, 432, 516
BsuTUI	ATCGAT	1 cut(s)	831
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	185, 214, 376, 679
Cfr13I	GGNCC	3 cut(s)	12, 100, 430
ClaI	ATCGAT	1 cut(s)	831
Csp6I	GTAC	2 cut(s)	334, 570
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	2 cut(s)	334, 570
DdeI	CTNAG	1 cut(s)	783
DpnI	GATC	4 cut(s)	192, 237, 560, 834
DpnII	GATC	4 cut(s)	190, 235, 558, 832
DraIII	CACNNNGTG	1 cut(s)	554
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	587, 842
EarI	CTCTTC	2 cut(s)	587, 842
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	433, 517
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	2 cut(s)	221, 818
Eco88I	CYCGRG	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	481, 502
EcoT14I	CCWWGG	2 cut(s)	433, 517
EcoT22I	ATGCAT	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	433, 517
FaeI	CATG	1 cut(s)	253
FaiI	YATR	7 cut(s)	251, 407, 424, 539, 590, 605, 702
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	249
FauI	CCCGC	2 cut(s)	2, 198
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	15, 283, 327
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	3 cut(s)	15, 283, 327
FspBI	CTAG	3 cut(s)	366, 434, 678
GluI	GCNGC	3 cut(s)	15, 283, 327
HaeIII	GGCC	6 cut(s)	14, 183, 212, 394, 432, 516
HapII	CCGG	1 cut(s)	552
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	5 cut(s)	139, 161, 168, 245, 861
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	2 cut(s)	458, 611
Hpy166II	GTNNAC	3 cut(s)	103, 424, 715
Hpy188I	TCNGA	6 cut(s)	127, 201, 235, 263, 563, 784
Hpy188III	TCNNGA	2 cut(s)	165, 841
Hpy8I	GTNNAC	3 cut(s)	103, 424, 715
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	173, 372, 793
HpyCH4III	ACNGT	5 cut(s)	295, 304, 333, 574, 686
HpyCH4IV	ACGT	2 cut(s)	33, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 470
HpyF3I	CTNAG	1 cut(s)	783
HpySE526I	ACGT	2 cut(s)	33, 568
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	190, 235, 558, 832
LmnI	GCTCC	1 cut(s)	364
LweI	GCATC	1 cut(s)	837
MaeI	CTAG	3 cut(s)	366, 434, 678
MaeII	ACGT	2 cut(s)	33, 568
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	4 cut(s)	192, 237, 560, 834
MboI	GATC	4 cut(s)	190, 235, 558, 832
MboII	GAAGA	2 cut(s)	604, 829
MfeI	CAATTG	3 cut(s)	114, 270, 749
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	7 cut(s)	85, 114, 270, 474, 737, 749, 820
MlyI	GAGTC	2 cut(s)	133, 870
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	7 cut(s)	166, 241, 461, 463, 490, 627, 644
Mph1103I	ATGCAT	1 cut(s)	633
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	3 cut(s)	483, 504, 552
MunI	CAATTG	3 cut(s)	114, 270, 749
MvaI	CCWGG	2 cut(s)	483, 504
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	384, 470
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	4 cut(s)	190, 235, 558, 832
NheI	GCTAGC	1 cut(s)	677
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	3 cut(s)	13, 501, 549
NmuCI	GTSAC	1 cut(s)	446
NsiI	ATGCAT	1 cut(s)	633
PasI	CCCWGGG	1 cut(s)	482
PceI	AGGCCT	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	161, 168, 245
Pfl23II	CGTACG	1 cut(s)	569
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	16, 284, 328
PleI	GAGTC	2 cut(s)	133, 869
PpsI	GAGTC	2 cut(s)	133, 869
Ppu21I	YACGTR	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	481, 502
PspGI	CCWGG	2 cut(s)	481, 502
PspLI	CGTACG	1 cut(s)	569
PspN4I	GGNNCC	3 cut(s)	13, 501, 549
PspPI	GGNCC	3 cut(s)	12, 100, 430
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	2 cut(s)	335, 571
RsaNI	GTAC	2 cut(s)	334, 570
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	3 cut(s)	15, 283, 327
Sau3AI	GATC	4 cut(s)	190, 235, 558, 832
Sau96I	GGNCC	3 cut(s)	12, 100, 430
SbfI	CCTGCAGG	1 cut(s)	376
SchI	GAGTC	2 cut(s)	133, 870
ScrFI	CCNGG	3 cut(s)	483, 504, 552
SdaI	CCTGCAGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	837
SfcI	CTRYAG	3 cut(s)	352, 372, 682
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse8387I	CCTGCAGG	1 cut(s)	376
Sse9I	AATT	7 cut(s)	85, 114, 270, 474, 737, 749, 820
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	6 cut(s)	9, 15, 106, 205, 282, 326
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	3 cut(s)	366, 434, 678
SstI	GAGCTC	1 cut(s)	361
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	3 cut(s)	481, 502, 550
StyI	CCWWGG	2 cut(s)	433, 517
TaaI	ACNGT	5 cut(s)	295, 304, 333, 574, 686
TaiI	ACGT	2 cut(s)	36, 571
TaqI	TCGA	5 cut(s)	39, 71, 83, 171, 831
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	7 cut(s)	85, 114, 270, 474, 737, 749, 820
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	3 cut(s)	17, 285, 329
TfiI	GAWTC	3 cut(s)	161, 168, 245
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	13, 605
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	2 cut(s)	85, 737
XmaJI	CCTAGG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	3 cut(s)	366, 434, 678
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.