Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

36811770 .. 36812264

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGGAGAAACCGAACCCAGCCCATTTCCTCCCCTCACCGGTGCCTGATTGCCGGAAACTACTGCCACGATGTTCTCATCCGCGACTGCGTCGTTTTGGCCGAGATGCTCGGCGGGGCCGCTTCTTTCATCTCCAACATGTTTGACGACGTTTCGGTGAGCTACAATCTGGTATCGAAAGTCAGGTCAGATTTTGCTTACTCGGTCCACCGCGACCCGATTGTGGTATCCGATTGCAGGACGACTCTGTCCCACGCGCATTTTGATTCTGGAATCGAGGGGGAAGGCCAGCAGGATCGGGTTTTAAAGCGGGTGGACTGCGACCCGATTTGCCCCTCAGATCTGCCCGAATCCAGGTTTGAGTTAGGAATGGCAATTGGGGTCGGCGGCAAGATTATGGTGGAGACGGTTGAGAACTGGTGGAGATTTGCGGCACTGTGTTTGTGGACATTCAAGCTCTGTTTCGGGTTTTTGATGGGGTTGATGGGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

164

Amino Acids

18.24

Weight (kDa)

5.67

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	42
AccII	CGCG	3 cut(s)	84, 213, 257
AciI	CCGC	7 cut(s)	82, 114, 120, 211, 310, 387, 431
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	99
AfiI	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
AflIII	ACRYGT	1 cut(s)	138
AgeI	ACCGGT	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	2 cut(s)	162, 457
AluI	AGCT	2 cut(s)	162, 457
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	3 cut(s)	99, 117, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsiGI	ACCGGT	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	117, 205
AsuHPI	GGTGA	2 cut(s)	29, 169
AvaII	GGWCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	42
BccI	CCATC	2 cut(s)	469, 478
BciT130I	CCWGG	1 cut(s)	355
BciVI	GTATCC	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	238
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	120, 388, 432
BlsI	GCNGC	3 cut(s)	121, 389, 433
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	117, 205
BmiI	GGNNCC	2 cut(s)	44, 118
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	422
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	3 cut(s)	84, 213, 257
BshFI	GGCC	3 cut(s)	101, 119, 288
BshNI	GGYRCC	1 cut(s)	42
BshTI	ACCGGT	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	40, 54
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	101, 119, 288
Bsp143I	GATC	2 cut(s)	295, 340
BspACI	CCGC	7 cut(s)	82, 114, 120, 211, 310, 387, 431
BspANI	GGCC	3 cut(s)	101, 119, 288
BspCNI	CTCAG	1 cut(s)	350
BspFNI	CGCG	3 cut(s)	84, 213, 257
BspLI	GGNNCC	2 cut(s)	44, 118
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	39
BssMI	GATC	2 cut(s)	295, 340
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	409, 438
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	3 cut(s)	84, 213, 257
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	298, 343
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	295, 340
BstNI	CCWGG	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	353
BstUI	CGCG	3 cut(s)	84, 213, 257
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	101, 119, 288
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	117, 205
CseI	GACGC	1 cut(s)	79
CspAI	ACCGGT	1 cut(s)	39
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	7 cut(s)	22, 101, 119, 162, 288, 457, 490
CviKI_1	RGCY	7 cut(s)	22, 101, 119, 162, 288, 457, 490
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	2 cut(s)	297, 342
DpnII	GATC	2 cut(s)	295, 340
DraI	TTTAAA	1 cut(s)	306
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 398
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	138
FauI	CCCGC	2 cut(s)	107, 303
Fnu4HI	GCNGC	3 cut(s)	120, 388, 432
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	120, 388, 432
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	120, 388, 432
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	3 cut(s)	101, 119, 288
HapII	CCGG	2 cut(s)	40, 54
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	4 cut(s)	244, 266, 273, 350
HpaII	CCGG	2 cut(s)	40, 54
HphI	GGTGA	2 cut(s)	29, 169
Hpy166II	GTNNAC	3 cut(s)	208, 316, 447
Hpy188I	TCNGA	3 cut(s)	190, 232, 340
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	3 cut(s)	208, 316, 447
Hpy99I	CGWCG	2 cut(s)	95, 152
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	409, 438
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	295, 340
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	150
MalI	GATC	2 cut(s)	297, 342
MboI	GATC	2 cut(s)	295, 340
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	40, 45, 271, 346
MseI	TTAA	1 cut(s)	305
MspI	CCGG	2 cut(s)	40, 54
MspR9I	CCNGG	1 cut(s)	355
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	355
MvnI	CGCG	3 cut(s)	84, 213, 257
NdeII	GATC	2 cut(s)	295, 340
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	44, 118
NmeAIII	GCCGAG	2 cut(s)	90, 127
NspI	RCATGY	1 cut(s)	142
PciI	ACATGT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	266, 273, 350
PflFI	GACNNNGTC	2 cut(s)	89, 247
PinAI	ACCGGT	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	121, 389, 433
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	44, 118
PspPI	GGNCC	2 cut(s)	117, 205
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	2 cut(s)	89, 247
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	3 cut(s)	120, 388, 432
Sau3AI	GATC	2 cut(s)	295, 340
Sau96I	GGNCC	2 cut(s)	117, 205
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	5 cut(s)	153, 164, 188, 359, 459
SfaNI	GCATC	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	7 cut(s)	82, 114, 120, 211, 310, 387, 431
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	409, 438
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	176, 276
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	375
TauI	GCSGC	3 cut(s)	122, 390, 434
TfiI	GAWTC	3 cut(s)	266, 273, 350
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	441
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	1 cut(s)	441
Tth111I	GACNNNGTC	2 cut(s)	89, 247
VpaK11BI	GGWCC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.