Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004181.1

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

95801 .. 96190

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004181.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgctcggtggggccgcttctttcatctccaacgtgttcgacggcgtttccgtgagctacaatctggtatctaaagtcgagtcgaattttgcttactcggtccaccgcgacccaattgtggtattcgattgcaggacgactctgtcccacgcgcattttgattctggaatcgagggggaaggcaagcaggatcgggttctgaagcgggtggcctgcgacccgatttgccggtcggatatgctcgaatccatgtttgatttcggaatggcaattggggtcggcggcgagattacggtggagacggttgagaactggtggagatttgcggcactgtgtttgtggacattcaagctctatttcgggtttttgatggggttgatggggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

129

Amino Acids

14.34

Weight (kDa)

5.02

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AccII	CGCG	2 cut(s)	108, 152
AciI	CCGC	5 cut(s)	15, 106, 205, 282, 326
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	2 cut(s)	57, 352
AluI	AGCT	2 cut(s)	57, 352
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	2 cut(s)	12, 210
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	12, 100
AvaII	GGWCC	1 cut(s)	100
BccI	CCATC	2 cut(s)	364, 373
BceAI	ACGGC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	293
BisI	GCNGC	3 cut(s)	15, 283, 327
BlsI	GCNGC	3 cut(s)	16, 284, 328
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	12, 100
BmiI	GGNNCC	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	108, 152
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	14, 212
BsiEI	CGRYCG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	14, 212
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	5 cut(s)	15, 106, 205, 282, 326
BspANI	GGCC	2 cut(s)	14, 212
BspFNI	CGCG	2 cut(s)	108, 152
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	295, 304, 333
BstC8I	GCNNGC	2 cut(s)	185, 214
BstFNI	CGCG	2 cut(s)	108, 152
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	233
BstUI	CGCG	2 cut(s)	108, 152
BsuRI	GGCC	2 cut(s)	14, 212
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	185, 214
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	12, 100
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	5 cut(s)	14, 57, 212, 352, 385
CviKI_1	RGCY	5 cut(s)	14, 57, 212, 352, 385
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	239, 251
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	15, 283, 327
Fsp4HI	GCNGC	3 cut(s)	15, 283, 327
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	15, 283, 327
HaeIII	GGCC	2 cut(s)	14, 212
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	5 cut(s)	80, 139, 161, 168, 245
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	103, 342
Hpy188I	TCNGA	3 cut(s)	201, 235, 263
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	2 cut(s)	103, 342
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	3 cut(s)	295, 304, 333
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	50, 118, 150, 173, 226, 242, 298
MaeII	ACGT	1 cut(s)	33
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MfeI	CAATTG	2 cut(s)	114, 270
MluCI	AATT	3 cut(s)	85, 114, 270
MlyI	GAGTC	2 cut(s)	89, 133
MmeI	TCCRAC	2 cut(s)	54, 213
MnlI	CCTC	1 cut(s)	166
MspI	CCGG	1 cut(s)	229
MunI	CAATTG	2 cut(s)	114, 270
MvnI	CGCG	2 cut(s)	108, 152
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	161, 168, 245
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	16, 284, 328
PleI	GAGTC	2 cut(s)	88, 133
PpsI	GAGTC	2 cut(s)	88, 133
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	12, 100
PsyI	GACNNNGTC	1 cut(s)	142
SatI	GCNGC	3 cut(s)	15, 283, 327
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	12, 100
SchI	GAGTC	2 cut(s)	89, 133
SetI	ASST	3 cut(s)	36, 59, 354
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	3 cut(s)	85, 114, 270
SsiI	CCGC	5 cut(s)	15, 106, 205, 282, 326
TaaI	ACNGT	3 cut(s)	295, 304, 333
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	6 cut(s)	39, 78, 83, 126, 171, 243
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	3 cut(s)	85, 114, 270
TauI	GCSGC	3 cut(s)	17, 285, 329
TfiI	GAWTC	3 cut(s)	161, 168, 245
TscAI	CASTG	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.