MD11G1074700.v1.1

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
6338965 .. 6341876
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1074700.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGGCCGAGACGGGAATCGATCCAATTCAGCTCCCCGGGTCCTAATCGCCGGCAACTACTGCCACGACGTTTTAATCAAAGACGGTGTCGTTTTGGCTGAGACTCTCGGCGGGGCCGCCTCCTTCATCTCCAATGTATTCGATGGAGTATCCGTTCCCTACGATTTGGTCTCCAAAGTCGGGTCGGACTTTGCTTACTCTGTCCCGCGTGACCCGATTGTCGTACCCGATTGCAAAACCACTCTCTTCCACGCGCATTTTGATTCCGGCGTCGGCGGTGATGAACGTCAGGACCGGGTTCTGCAACGGGTAAGAGCTTGCCACCCTATTAGGCCCTCGGATCTCCCCGACTCGAGGTTTGATTTCGGAATGGCGGTTGGAGTCGGCGGCGAGATTACCGTTGAGACGGTGGAGAAGTTGGTTGAGACTTGCGACACTGTGTTCATGGACATTCAGGCTCTGATTCGAGGGTTCGATGGAGTCGACGGGACTGTGAAGCTTGTGGGTTTGAAGGAGAGTGGATTCTTCCACCTCTTGCCTCGAATTGGATTTTTGAAGGCGTCGGCTGAGGAGGCATTGCTTATGGAGGTGGAGGAGGTGAGGACGCTCTGCTGTGTTGTGGTGACGAACGGGAGGCGTGGGTGTAAAGTTTATTGGAGAGACGGTGAGGTGGAAGTTGCGCCTTTTCCGACGAACCAGGTTGATCCGACGGGCGCAGGAGACAGTTTCCTTGGTGGGTTTGTTGCCGGGCTTGTTAATGGCTTGACTGTGCCTGATGCTGCATTGCTCGGCAACCTTTTCGGATCACTGACTGTTGGGCAAATTGGATTGCCCAAGTTTGATTCCAAGTTGTTGCAGAGAGTTCGTGAAGAGGTGCAGAGGAGAAAAATGCAGTGCGCTAATTGCCACGAAAGAAAAGATGACAGGTTTAGGTTTGTGAACATAGAAGGACATGAGCAATTTCAAGCATCCCTAGGAGCAGCTAAGCAGACAACAAAGTGCCTTGCTCAGGAACCTCAATGGGATCTGCCAAGTTCTCCTCCCAAGTCAATGGAACAGGGTGTCCTCCCTCAATACGCGACACAGCCTAAATTGTTGCCCGTCTCTGTCAATGAAGAACCAGTTCAAATCGTTGACACTGCCGGTAAGCCATGA

Protein Analysis

385

Amino Acids

41.7

Weight (kDa)

5.31

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 205 - 276 2.2e-19 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 483
AccII CGCG 3 cut(s) 208, 254, 1079
AciI CCGC 6 cut(s) 111, 117, 206, 276, 374, 387
AclWI GGATC 5 cut(s) 15, 348, 698, 811, 1032
AcyI GRCGYC 2 cut(s) 270, 560
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 4 cut(s) 180, 354, 545, 1009
AgsI TTSAA 4 cut(s) 511, 556, 965, 1127
AjnI CCWGG 1 cut(s) 696
AloI GAACNNNNNNTCC 4 cut(s) 138, 170, 1047, 1079
AluBI AGCT 4 cut(s) 32, 317, 499, 983
AluI AGCT 4 cut(s) 32, 317, 499, 983
Alw26I GTCTC 8 cut(s) 3, 95, 175, 398, 419, 654, 714, 1108
AlwI GGATC 5 cut(s) 15, 348, 698, 811, 1032
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 2 cut(s) 36, 352
AoxI GGCC 3 cut(s) 4, 114, 332
ApeKI GCWGC 2 cut(s) 779, 980
ArsI GACNNNNNNTTYG 4 cut(s) 72, 104, 341, 373
Asp700I GAANNNNTTC 1 cut(s) 1122
AspA2I CCTAGG 1 cut(s) 973
AspLEI GCGC 4 cut(s) 256, 682, 716, 899
AspS9I GGNCC 5 cut(s) 4, 40, 114, 292, 333
AsuC2I CCSGG 4 cut(s) 37, 38, 296, 748
AsuHPI GGTGA 4 cut(s) 290, 610, 634, 677
AvaI CYCGRG 2 cut(s) 36, 352
AvaII GGWCC 2 cut(s) 40, 292
AvrII CCTAGG 1 cut(s) 973
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 766, 992
BccI CCATC 2 cut(s) 137, 470
BcgI CGANNNNNNTGC 4 cut(s) 781, 815, 845, 879
BciT130I CCWGG 1 cut(s) 698
BciVI GTATCC 1 cut(s) 160
BcnI CCSGG 4 cut(s) 37, 38, 296, 748
BcoDI GTCTC 8 cut(s) 3, 95, 175, 398, 419, 654, 714, 1108
BfaI CTAG 1 cut(s) 974
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 4 cut(s) 117, 388, 780, 981
BlnI CCTAGG 1 cut(s) 973
BlpI GCTNAGC 1 cut(s) 984
BlsI GCNGC 4 cut(s) 118, 389, 781, 982
Bme1390I CCNGG 5 cut(s) 37, 38, 296, 698, 748
Bme18I GGWCC 2 cut(s) 40, 292
BmeT110I CYCGRG 2 cut(s) 36, 352
BmgT120I GGNCC 5 cut(s) 4, 40, 114, 292, 333
BmiI GGNNCC 3 cut(s) 41, 115, 1014
BmrFI CCNGG 5 cut(s) 37, 38, 296, 698, 748
BmsI GCATC 2 cut(s) 766, 977
Bpu10I CCTNAGC 2 cut(s) 567, 1008
Bpu1102I GCTNAGC 1 cut(s) 984
BpuMI CCSGG 4 cut(s) 37, 38, 296, 748
Bsa29I ATCGAT 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 270, 560
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 5 cut(s) 35, 36, 336, 730, 973
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 649, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 354, 545, 1009
Bse118I RCCGGY 2 cut(s) 50, 1142
Bse1I ACTGG 1 cut(s) 1121
Bse3DI GCAATG 2 cut(s) 575, 782
BseBI CCWGG 1 cut(s) 698
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 35, 36, 336, 730, 973
BseGI GGATG 1 cut(s) 968
BseLI CCNNNNNNNGG 4 cut(s) 180, 354, 545, 1009
BseMI GCAATG 2 cut(s) 575, 782
BseMII CTCAG 3 cut(s) 90, 558, 1022
BseNI ACTGG 1 cut(s) 1121
BseRI GAGGAG 4 cut(s) 584, 608, 895, 1029
BseXI GCAGC 2 cut(s) 766, 992
BsgI GTGCAG 1 cut(s) 896
Bsh1236I CGCG 3 cut(s) 208, 254, 1079
BshFI GGCC 3 cut(s) 6, 116, 334
BshVI ATCGAT 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 36, 352
BsiSI CCGG 6 cut(s) 37, 51, 267, 295, 747, 1143
BslFI GGGAC 2 cut(s) 188, 502
BslI CCNNNNNNNGG 4 cut(s) 180, 354, 545, 1009
BsmAI GTCTC 8 cut(s) 3, 95, 175, 398, 419, 654, 714, 1108
BsmBI CGTCTC 4 cut(s) 3, 398, 654, 1108
BsmFI GGGAC 2 cut(s) 188, 502
BsnI GGCC 3 cut(s) 6, 116, 334
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 2 cut(s) 36, 352
Bsp143I GATC 5 cut(s) 20, 340, 703, 803, 1024
Bsp1720I GCTNAGC 1 cut(s) 984
BspACI CCGC 6 cut(s) 111, 117, 206, 276, 374, 387
BspANI GGCC 3 cut(s) 6, 116, 334
BspCNI CTCAG 3 cut(s) 91, 559, 1021
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 3 cut(s) 208, 254, 1079
BspLI GGNNCC 3 cut(s) 41, 115, 1014
BspPI GGATC 5 cut(s) 15, 348, 698, 811, 1032
BspTNI GGTCTC 1 cut(s) 175
BsrDI GCAATG 2 cut(s) 575, 782
BsrFI RCCGGY 2 cut(s) 50, 1142
BsrI ACTGG 1 cut(s) 1121
BssAI RCCGGY 2 cut(s) 50, 1142
BssECI CCNNGG 5 cut(s) 35, 36, 336, 730, 973
BssMI GATC 5 cut(s) 20, 340, 703, 803, 1024
BssNI GRCGYC 2 cut(s) 270, 560
BssT1I CCWWGG 2 cut(s) 730, 973
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 9 cut(s) 86, 400, 409, 439, 493, 665, 725, 769, 814
Bst6I CTCTTC 2 cut(s) 251, 864
BstACI GRCGYC 2 cut(s) 270, 560
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 52, 319
BstDEI CTNAG 4 cut(s) 99, 567, 984, 1008
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstF5I GGATG 1 cut(s) 968
BstFNI CGCG 3 cut(s) 208, 254, 1079
BstHHI GCGC 4 cut(s) 256, 682, 716, 899
BstKTI GATC 5 cut(s) 23, 343, 706, 806, 1027
BstMAI GTCTC 8 cut(s) 3, 95, 175, 398, 419, 654, 714, 1108
BstMBI GATC 5 cut(s) 20, 340, 703, 803, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 60, 572, 903
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 5 cut(s) 35, 36, 294, 696, 746
BstUI CGCG 3 cut(s) 208, 254, 1079
BstV1I GCAGC 2 cut(s) 766, 992
BstX2I RGATCY 2 cut(s) 340, 1024
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 2 cut(s) 340, 1024
Bsu15I ATCGAT 1 cut(s) 19
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 3 cut(s) 6, 116, 334
BsuTUI ATCGAT 1 cut(s) 19
BtsCI GGATG 1 cut(s) 968
BtsI GCAGTG 2 cut(s) 899, 1137
BtsIMutI CAGTG 4 cut(s) 435, 806, 899, 1137
Cac8I GCNNGC 2 cut(s) 52, 319
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 4 cut(s) 256, 682, 716, 899
Cfr10I RCCGGY 2 cut(s) 50, 1142
Cfr13I GGNCC 5 cut(s) 4, 40, 114, 292, 333
Cfr9I CCCGGG 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 3 cut(s) 259, 549, 613
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 1 cut(s) 224
CviAII CATG 3 cut(s) 445, 953, 1152
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 4 cut(s) 99, 567, 984, 1008
DpnI GATC 5 cut(s) 22, 342, 705, 805, 1026
DpnII GATC 5 cut(s) 20, 340, 703, 803, 1024
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 251, 864
EarI CTCTTC 2 cut(s) 251, 864
Eco130I CCWWGG 2 cut(s) 730, 973
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 40, 292
Eco88I CYCGRG 2 cut(s) 36, 352
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoO109I RGGNCCY 2 cut(s) 40, 333
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 2 cut(s) 730, 973
ErhI CCWWGG 2 cut(s) 730, 973
Esp3I CGTCTC 4 cut(s) 3, 398, 654, 1108
FaeI CATG 3 cut(s) 448, 956, 1155
FaiI YATR 5 cut(s) 446, 584, 944, 954, 1153
FaqI GGGAC 2 cut(s) 188, 502
FatI CATG 3 cut(s) 444, 952, 1151
FauI CCCGC 2 cut(s) 104, 213
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 4 cut(s) 117, 388, 780, 981
FokI GGATG 1 cut(s) 955
Fsp4HI GCNGC 4 cut(s) 117, 388, 780, 981
FspBI CTAG 1 cut(s) 974
GlaI GCGC 4 cut(s) 255, 681, 715, 898
GluI GCNGC 4 cut(s) 117, 388, 780, 981
HaeIII GGCC 3 cut(s) 6, 116, 334
HapII CCGG 6 cut(s) 37, 51, 267, 295, 747, 1143
HgaI GACGC 3 cut(s) 259, 549, 613
HhaI GCGC 4 cut(s) 256, 682, 716, 899
Hin1I GRCGYC 2 cut(s) 270, 560
Hin1II CATG 3 cut(s) 448, 956, 1155
Hin6I GCGC 4 cut(s) 254, 680, 714, 897
HinP1I GCGC 4 cut(s) 254, 680, 714, 897
HincII GTYRAC 2 cut(s) 484, 1135
HindII GTYRAC 2 cut(s) 484, 1135
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 9 cut(s) 16, 103, 263, 350, 381, 463, 480, 522, 842
HpaII CCGG 6 cut(s) 37, 51, 267, 295, 747, 1143
HphI GGTGA 4 cut(s) 290, 610, 634, 677
Hpy166II GTNNAC 3 cut(s) 484, 940, 1135
Hpy188I TCNGA 7 cut(s) 187, 340, 368, 462, 690, 708, 803
Hpy188III TCNNGA 3 cut(s) 290, 866, 1010
Hpy8I GTNNAC 3 cut(s) 484, 940, 1135
Hpy99I CGWCG 6 cut(s) 71, 275, 488, 565, 694, 712
HpyAV CCTTC 4 cut(s) 133, 505, 550, 941
HpyCH4III ACNGT 9 cut(s) 86, 400, 409, 439, 493, 665, 725, 769, 814
HpyCH4IV ACGT 2 cut(s) 69, 286
HpyCH4V TGCA 6 cut(s) 234, 304, 782, 856, 877, 892
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 572, 903
HpyF3I CTNAG 4 cut(s) 99, 567, 984, 1008
HpySE526I ACGT 2 cut(s) 69, 286
Hsp92I GRCGYC 2 cut(s) 270, 560
Hsp92II CATG 3 cut(s) 448, 956, 1155
HspAI GCGC 4 cut(s) 254, 680, 714, 897
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 20, 340, 703, 803, 1024
LmnI GCTCC 2 cut(s) 37, 977
Lsp1109I GCAGC 2 cut(s) 766, 992
LweI GCATC 2 cut(s) 766, 977
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 1 cut(s) 974
MaeII ACGT 2 cut(s) 69, 286
MaeIII GTNAC 2 cut(s) 209, 622
MalI GATC 5 cut(s) 22, 342, 705, 805, 1026
MboI GATC 5 cut(s) 20, 340, 703, 803, 1024
MboII GAAGA 4 cut(s) 238, 517, 881, 1127
MflI RGATCY 2 cut(s) 340, 1024
MluCI AATT 6 cut(s) 25, 543, 822, 901, 959, 1091
MlyI GAGTC 4 cut(s) 97, 344, 390, 489
MmeI TCCRAC 4 cut(s) 165, 358, 713, 731
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 1122
MseI TTAA 2 cut(s) 74, 756
MspI CCGG 6 cut(s) 37, 51, 267, 295, 747, 1143
MspR9I CCNGG 5 cut(s) 37, 38, 296, 698, 748
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 3 cut(s) 208, 254, 1079
MwoI GCNNNNNNNGC 3 cut(s) 60, 572, 903
NaeI GCCGGC 1 cut(s) 52
NciI CCSGG 4 cut(s) 37, 38, 296, 748
NdeII GATC 5 cut(s) 20, 340, 703, 803, 1024
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 3 cut(s) 448, 956, 1155
NlaIV GGNNCC 3 cut(s) 41, 115, 1014
NmeAIII GCCGAG 3 cut(s) 32, 87, 768
NmuCI GTSAC 2 cut(s) 209, 622
PaeR7I CTCGAG 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 1122
PfeI GAWTC 5 cut(s) 16, 263, 463, 522, 842
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 118, 389, 781, 982
PleI GAGTC 4 cut(s) 97, 344, 389, 488
PpsI GAGTC 4 cut(s) 97, 344, 389, 488
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 3 cut(s) 41, 115, 1014
PspPI GGNCC 5 cut(s) 4, 40, 114, 292, 333
PspPPI RGGWCCY 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 2 cut(s) 340, 1024
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 74, 756
SatI GCNGC 4 cut(s) 117, 388, 780, 981
Sau3AI GATC 5 cut(s) 20, 340, 703, 803, 1024
Sau96I GGNCC 5 cut(s) 4, 40, 114, 292, 333
SchI GAGTC 4 cut(s) 97, 344, 390, 489
ScrFI CCNGG 5 cut(s) 37, 38, 296, 698, 748
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 2 cut(s) 766, 977
Sfr274I CTCGAG 1 cut(s) 352
SinI GGWCC 2 cut(s) 40, 292
SlaI CTCGAG 1 cut(s) 352
SmaI CCCGGG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 6 cut(s) 25, 543, 822, 901, 959, 1091
SsiI CCGC 6 cut(s) 111, 117, 206, 276, 374, 387
SspMI CTAG 1 cut(s) 974
StyD4I CCNGG 5 cut(s) 35, 36, 294, 696, 746
StyI CCWWGG 2 cut(s) 730, 973
TaaI ACNGT 9 cut(s) 86, 400, 409, 439, 493, 665, 725, 769, 814
TaiI ACGT 2 cut(s) 72, 289
TaqI TCGA 7 cut(s) 19, 141, 353, 466, 474, 483, 541
TasI AATT 6 cut(s) 25, 543, 822, 901, 959, 1091
TauI GCSGC 2 cut(s) 119, 390
TfiI GAWTC 5 cut(s) 16, 263, 463, 522, 842
Tru1I TTAA 2 cut(s) 74, 756
Tru9I TTAA 2 cut(s) 74, 756
TscAI CASTG 4 cut(s) 442, 813, 899, 1144
TseFI GTSAC 2 cut(s) 209, 622
TseI GCWGC 2 cut(s) 779, 980
Tsp45I GTSAC 2 cut(s) 209, 622
TspDTI ATGAA 4 cut(s) 115, 297, 433, 1128
TspGWI ACGGA 1 cut(s) 142
TspMI CCCGGG 1 cut(s) 36
TspRI CASTG 4 cut(s) 442, 813, 899, 1144
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 40, 292
XagI CCTNNNNNAGG 1 cut(s) 1007
XhoI CTCGAG 1 cut(s) 352
XmaI CCCGGG 1 cut(s) 36
XmaJI CCTAGG 1 cut(s) 973
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 1122
XspI CTAG 1 cut(s) 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.