Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

14521178 .. 14523733

Gene Structure 2556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGTTGTCCGTGAGTTACAATCTGGTGTCCAAAGTCGGGTCGGATTTTGCTTACTCGGTCCATCGCGACCCGATTGTGGTATCCGATTGCAGGACGACTCTGTTCCACGCGCATTTTGATTCTGGAATCGAGGGGGAGGGCCAGCAGGATCGGGTTCTGAAGCGGGTCAATGCCTGCGACCCGATTCGGCCCTCGGATCTGCCAGAATCCAGGTTTGATTTAGGAATGGCCGTTGGGGTCGGCGGCGAGATTACGGTGGAGACGGTTGAGAAACTGATGGAGATTTGCGGCACTGTGTTTGTGGACATTCAGGCTCTGATTCGGGTTTTCGATGGGGTTGATGGGGCTGTGAAGCTTGTGGGTTTGAAAGAGAGTGGCTTCTTTCATCTCTTGCCCAGAATTGGGTTTATAAAGGCGTCGGCGGAGGAGGCTTTGTTTATGGATGTTGAGGAGGTCAGGAAGGTGTGTTGTGTTGTGGTGACGAATGGGAAGCGTGGGTGTAGAGTGTATTGGAGAGATGGGGAAGTAGAAGTCGGGCCGTTTCCGACGAGCCAGGTTGATCCAACCGGTGCCGGAGATAGTTTTCTCGGTGGGTTTGTTGCGGGGCTTGTTAATGGGTTGGCTGTGCCTGATGCTGCATTGCTTGGGAACTTGTTTGGGTCATTGACTGTGGGGCAAATTGGACTGCCCAAGTTCGACTTGAAGTTGCTACAGAGAGTTCTTGAAGAGGTGCAGAAGAGAAAGGTACAGTGTATCAGCTGCCACGAAAGAAAAGACGAGAAGTTCAGGTTTATGAATGTAGCAGGACATGAACAGTTTCATGCATCCCTCATAGCAGCCAAACAGATACCAAGGTGCCTTCCTCGTGAATGTGAATGGGATCTGCCAAATTCTCCTTCCAGAGCAGTGGAGCAGGGTTTGAATGTCCTCCCCCATTTCACAACCCAGCCAAAACTTTTACCCGATGCCGTCTACGAGGAGCCAATTCGAACAGCGGATGGTAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

337

Amino Acids

36.95

Weight (kDa)

5.57

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	158 - 229	3.4e-19	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccB1I	GGYRCC	2 cut(s)	572, 858
AccI	GTMKAC	1 cut(s)	975
AccII	CGCG	2 cut(s)	69, 113
AciI	CCGC	6 cut(s)	166, 246, 291, 425, 605, 998
AclWI	GGATC	4 cut(s)	159, 207, 557, 891
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	1 cut(s)	750
AfiI	CCNNNNNNNGG	5 cut(s)	39, 79, 93, 404, 405
AgeI	ACCGGT	1 cut(s)	569
AgsI	TTSAA	4 cut(s)	370, 706, 728, 925
AjnI	CCWGG	2 cut(s)	212, 555
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AluBI	AGCT	2 cut(s)	358, 762
AluI	AGCT	2 cut(s)	358, 762
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	4 cut(s)	159, 207, 557, 891
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	4 cut(s)	142, 191, 231, 539
ApeKI	GCWGC	3 cut(s)	638, 762, 839
ApoI	RAATTY	1 cut(s)	892
AsiGI	ACCGGT	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	819
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	4 cut(s)	61, 142, 192, 539
AsuHPI	GGTGA	1 cut(s)	493
AsuII	TTCGAA	1 cut(s)	991
AvaII	GGWCC	1 cut(s)	61
BaeI	ACNNNNGTAYC	2 cut(s)	842, 875
BanI	GGYRCC	2 cut(s)	572, 858
BauI	CACGAG	1 cut(s)	867
BbvI	GCAGC	3 cut(s)	625, 749, 851
BccI	CCATC	6 cut(s)	72, 274, 329, 338, 515, 995
BceAI	ACGGC	3 cut(s)	218, 526, 956
BciT130I	CCWGG	2 cut(s)	214, 557
BciVI	GTATCC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	5 cut(s)	247, 292, 639, 763, 840
BlsI	GCNGC	5 cut(s)	248, 293, 640, 764, 841
Bme1390I	CCNGG	2 cut(s)	214, 557
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	4 cut(s)	61, 142, 192, 539
BmiI	GGNNCC	3 cut(s)	574, 860, 984
BmrFI	CCNGG	2 cut(s)	214, 557
BmsI	GCATC	3 cut(s)	625, 836, 958
Bpu14I	TTCGAA	1 cut(s)	991
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	195, 854
BsaWI	WCCGGW	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 79, 93, 404, 405
Bse118I	RCCGGY	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	641
BseBI	CCWGG	2 cut(s)	214, 557
BseDI	CCNNGG	2 cut(s)	195, 854
BseGI	GGATG	3 cut(s)	451, 827, 1006
BseLI	CCNNNNNNNGG	5 cut(s)	39, 79, 93, 404, 405
BseMI	GCAATG	1 cut(s)	641
BseRI	GAGGAG	3 cut(s)	443, 467, 995
BseXI	GCAGC	3 cut(s)	625, 749, 851
BseYI	CCCAGC	1 cut(s)	948
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	2 cut(s)	69, 113
BshFI	GGCC	4 cut(s)	144, 193, 233, 541
BshNI	GGYRCC	2 cut(s)	572, 858
BshTI	ACCGGT	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	570, 576
BslI	CCNNNNNNNGG	5 cut(s)	39, 79, 93, 404, 405
BsmAI	GTCTC	1 cut(s)	257
BsmBI	CGTCTC	1 cut(s)	257
BsnI	GGCC	4 cut(s)	144, 193, 233, 541
Bsp119I	TTCGAA	1 cut(s)	991
Bsp143I	GATC	4 cut(s)	151, 199, 562, 883
Bsp68I	TCGCGA	1 cut(s)	69
BspACI	CCGC	6 cut(s)	166, 246, 291, 425, 605, 998
BspANI	GGCC	4 cut(s)	144, 193, 233, 541
BspFNI	CGCG	2 cut(s)	69, 113
BspLI	GGNNCC	3 cut(s)	574, 860, 984
BspPI	GGATC	4 cut(s)	159, 207, 557, 891
BspT104I	TTCGAA	1 cut(s)	991
BspT107I	GGYRCC	2 cut(s)	572, 858
BsrDI	GCAATG	1 cut(s)	641
BsrFI	RCCGGY	1 cut(s)	569
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	195, 854
BssMI	GATC	4 cut(s)	151, 199, 562, 883
BssNI	GRCGYC	1 cut(s)	419
BssSI	CACGAG	1 cut(s)	867
BssT1I	CCWWGG	1 cut(s)	854
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	2 cut(s)	214, 557
Bst4CI	ACNGT	6 cut(s)	259, 268, 298, 673, 753, 819
Bst6I	CTCTTC	2 cut(s)	723, 734
BstACI	GRCGYC	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	991
BstC8I	GCNNGC	2 cut(s)	146, 178
BstF5I	GGATG	3 cut(s)	451, 827, 1006
BstFNI	CGCG	2 cut(s)	69, 113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	4 cut(s)	154, 202, 565, 886
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	4 cut(s)	151, 199, 562, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	2 cut(s)	214, 557
BstSCI	CCNGG	2 cut(s)	212, 555
BstSFI	CTRYAG	1 cut(s)	713
BstUI	CGCG	2 cut(s)	69, 113
BstV1I	GCAGC	3 cut(s)	625, 749, 851
BstX2I	RGATCY	2 cut(s)	199, 883
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstYI	RGATCY	2 cut(s)	199, 883
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	4 cut(s)	144, 193, 233, 541
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	451, 827, 1006
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	3 cut(s)	294, 758, 915
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	146, 178
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	4 cut(s)	61, 142, 192, 539
CseI	GACGC	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	749
CspAI	ACCGGT	1 cut(s)	569
CviAII	CATG	2 cut(s)	812, 824
CviQI	GTAC	1 cut(s)	749
DpnI	GATC	4 cut(s)	153, 201, 564, 885
DpnII	GATC	4 cut(s)	151, 199, 562, 883
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	723, 734
EarI	CTCTTC	2 cut(s)	723, 734
EciI	GGCGGA	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	212, 555
EcoT14I	CCWWGG	1 cut(s)	854
EcoT22I	ATGCAT	1 cut(s)	829
ErhI	CCWWGG	1 cut(s)	854
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	2 cut(s)	815, 827
FaiI	YATR	6 cut(s)	413, 443, 797, 813, 825, 836
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FatI	CATG	2 cut(s)	811, 823
FauI	CCCGC	2 cut(s)	159, 598
FblI	GTMKAC	1 cut(s)	975
Fnu4HI	GCNGC	5 cut(s)	247, 292, 639, 763, 840
FokI	GGATG	2 cut(s)	458, 814
Fsp4HI	GCNGC	5 cut(s)	247, 292, 639, 763, 840
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	5 cut(s)	247, 292, 639, 763, 840
GsaI	CCCAGC	1 cut(s)	952
HaeIII	GGCC	4 cut(s)	144, 193, 233, 541
HapII	CCGG	2 cut(s)	570, 576
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	815, 827
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	6 cut(s)	100, 122, 129, 187, 209, 322
HpaII	CCGG	2 cut(s)	570, 576
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	3 cut(s)	307, 976, 1007
Hpy188I	TCNGA	6 cut(s)	46, 88, 162, 199, 321, 549
Hpy188III	TCNNGA	6 cut(s)	68, 126, 460, 725, 869, 903
Hpy8I	GTNNAC	3 cut(s)	307, 976, 1007
Hpy99I	CGWCG	2 cut(s)	424, 553
HpyAV	CCTTC	3 cut(s)	457, 872, 909
HpyCH4III	ACNGT	6 cut(s)	259, 268, 298, 673, 753, 819
HpyCH4V	TGCA	4 cut(s)	93, 641, 736, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	815, 827
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	4 cut(s)	151, 199, 562, 883
LmnI	GCTCC	2 cut(s)	913, 982
Lsp1109I	GCAGC	3 cut(s)	625, 749, 851
LweI	GCATC	3 cut(s)	625, 836, 958
MaeIII	GTNAC	2 cut(s)	17, 481
MalI	GATC	4 cut(s)	153, 201, 564, 885
MboI	GATC	4 cut(s)	151, 199, 562, 883
MboII	GAAGA	2 cut(s)	740, 751
MflI	RGATCY	2 cut(s)	199, 883
MluCI	AATT	4 cut(s)	402, 681, 892, 987
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	3 cut(s)	24, 572, 590
Mph1103I	ATGCAT	1 cut(s)	829
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	762, 998
MspI	CCGG	2 cut(s)	570, 576
MspR9I	CCNGG	2 cut(s)	214, 557
MvaI	CCWGG	2 cut(s)	214, 557
MvnI	CGCG	2 cut(s)	69, 113
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	4 cut(s)	151, 199, 562, 883
NlaIII	CATG	2 cut(s)	815, 827
NlaIV	GGNNCC	3 cut(s)	574, 860, 984
NmuCI	GTSAC	1 cut(s)	481
NruI	TCGCGA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	829
NspV	TTCGAA	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	5 cut(s)	122, 129, 187, 209, 322
PinAI	ACCGGT	1 cut(s)	569
PkrI	GCNGC	5 cut(s)	248, 293, 640, 764, 841
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	212, 555
PspFI	CCCAGC	1 cut(s)	948
PspGI	CCWGG	2 cut(s)	212, 555
PspN4I	GGNNCC	3 cut(s)	574, 860, 984
PspPI	GGNCC	4 cut(s)	61, 142, 192, 539
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	199, 883
PvuII	CAGCTG	1 cut(s)	762
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	1 cut(s)	750
RsaNI	GTAC	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	5 cut(s)	247, 292, 639, 763, 840
Sau3AI	GATC	4 cut(s)	151, 199, 562, 883
Sau96I	GGNCC	4 cut(s)	61, 142, 192, 539
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	214, 557
SfaNI	GCATC	3 cut(s)	625, 836, 958
SfcI	CTRYAG	1 cut(s)	713
SfuI	TTCGAA	1 cut(s)	991
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	4 cut(s)	402, 681, 892, 987
SsiI	CCGC	6 cut(s)	166, 246, 291, 425, 605, 998
StyD4I	CCNGG	2 cut(s)	212, 555
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	6 cut(s)	259, 268, 298, 673, 753, 819
TaqI	TCGA	4 cut(s)	132, 333, 699, 991
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	4 cut(s)	402, 681, 892, 987
TauI	GCSGC	2 cut(s)	249, 294
TfiI	GAWTC	5 cut(s)	122, 129, 187, 209, 322
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	3 cut(s)	301, 758, 915
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	3 cut(s)	638, 762, 839
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	4 cut(s)	377, 812, 812, 828
TspRI	CASTG	3 cut(s)	301, 758, 915
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	975
XmnI	GAANNNNTTC	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.