Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Forward (+)

37317765 .. 37329760

Gene Structure 11996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACAATTAACGGGGATTGTAGAGTCCCACGTAATAAGTCCCTTGTTCGGCAAAGAAACCGGAAGGAATATGAAAGAACTGGGACTTTAACACGGGAATATCAAGGGGGATATGTATTAAGCGAAATCCCGCCTCCAAGTTACACCCGAAGAGACGTAACTTTGAAATTCCAAAGGACCACGACGCGTCCATTCCTCGCGATTTCTTCTAATTCCATCACCGATCACCCGGTTTCTTGTGCACCATGGGCTTTCGTTTCTCGTTGTAATCGGGGTTTCATCCAACTCACACTCAAATCACCACGTGGCATTGCTCATATAGCTGTTTTCACACGATTGACATCCTGTCTTGGCATACAATTTATTGTTTTTCAAACAATAAACATACCACCTCGCTCAGTGTATAGTATACTCAATACATTCCAACATTCTCTCTTTCATGACGCCTCTCTAACCCTAGCGCCCTTTTTATTGTCTCCCACCCGGGATCTTAATGCGCACCGACGGATCACGAATCCCAATCCAAACCCCTTATGGGGAGAAACCGAACCCAGCCCATTTCCTCCCCTCGCGGTGCCGATTGCGGGAAATTATTGCCACGACGTTCTCATCCGCTACGACGTCGTTTTGGCCGAGACGCTCGGCGGGGCCGCTTCTTTCATCTCCAACGTGTTCGATGGCATTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

229

Amino Acids

25.67

Weight (kDa)

9.71

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	624
Acc16I	TGCGCA	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	409
AccII	CGCG	3 cut(s)	187, 200, 572
AciI	CCGC	6 cut(s)	131, 572, 584, 613, 645, 651
AclWI	GGATC	2 cut(s)	495, 515
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	305
AcyI	GRCGYC	2 cut(s)	444, 621
AdeI	CACNNNGTG	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	48, 535, 536, 584
AflIII	ACRYGT	2 cut(s)	185, 669
AgsI	TTSAA	2 cut(s)	166, 374
AhdI	GACNNNNNGTC	1 cut(s)	345
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	3 cut(s)	147, 480, 629
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	495, 515
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	630, 648
ApaLI	GTGCAC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	463, 499
AspS9I	GGNCC	2 cut(s)	177, 648
AsuC2I	CCSGG	3 cut(s)	230, 484, 485
AsuHPI	GGTGA	3 cut(s)	211, 218, 291
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	574
BbrPI	CACGTG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	244
BccI	CCATC	2 cut(s)	224, 671
BcnI	CCSGG	3 cut(s)	230, 484, 485
BcoDI	GTCTC	3 cut(s)	147, 480, 629
BfaI	CTAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	464
BisI	GCNGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	652
Bme1390I	CCNGG	3 cut(s)	230, 484, 485
Bme18I	GGWCC	1 cut(s)	177
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	177, 648
BmiI	GGNNCC	2 cut(s)	576, 649
BmrFI	CCNGG	3 cut(s)	230, 484, 485
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
BpuMI	CCSGG	3 cut(s)	230, 484, 485
BsaAI	YACGTR	2 cut(s)	32, 305
BsaBI	GATNNNNATC	1 cut(s)	340
BsaHI	GRCGYC	2 cut(s)	444, 621
BsaJI	CCNNGG	2 cut(s)	245, 483
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 535, 536, 584
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	245, 483
BseGI	GGATG	3 cut(s)	279, 341, 609
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	48, 535, 536, 584
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	551
Bsh1236I	CGCG	3 cut(s)	187, 200, 572
BshFI	GGCC	2 cut(s)	632, 650
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	3 cut(s)	61, 230, 484
BslFI	GGGAC	3 cut(s)	11, 25, 97
BslI	CCNNNNNNNGG	4 cut(s)	48, 535, 536, 584
BsmAI	GTCTC	3 cut(s)	147, 480, 629
BsmBI	CGTCTC	2 cut(s)	147, 629
BsmFI	GGGAC	3 cut(s)	11, 25, 97
BsnI	GGCC	2 cut(s)	632, 650
BsoBI	CYCGRG	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	223, 487, 507
Bsp19I	CCATGG	1 cut(s)	245
Bsp68I	TCGCGA	1 cut(s)	200
BspACI	CCGC	6 cut(s)	131, 572, 584, 613, 645, 651
BspANI	GGCC	2 cut(s)	632, 650
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	3 cut(s)	187, 200, 572
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	576, 649
BspPI	GGATC	2 cut(s)	495, 515
BspT107I	GGYRCC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	245, 483
BssMI	GATC	3 cut(s)	223, 487, 507
BssNAI	GTATAC	1 cut(s)	410
BssNI	GRCGYC	2 cut(s)	444, 621
BssT1I	CCWWGG	1 cut(s)	245
Bst1107I	GTATAC	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	2 cut(s)	444, 621
BstBAI	YACGTR	2 cut(s)	32, 305
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	279, 341, 609
BstFNI	CGCG	3 cut(s)	187, 200, 572
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	463, 499
BstKTI	GATC	3 cut(s)	226, 490, 510
BstMAI	GTCTC	3 cut(s)	147, 480, 629
BstMBI	GATC	3 cut(s)	223, 487, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 320
BstSCI	CCNGG	3 cut(s)	228, 482, 483
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	3 cut(s)	187, 200, 572
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BstZ17I	GTATAC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	632, 650
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	279, 341, 609
BtsIMutI	CAGTG	1 cut(s)	405
BtuMI	TCGCGA	1 cut(s)	200
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	2 cut(s)	463, 499
Cfr13I	GGNCC	2 cut(s)	177, 648
Cfr9I	CCCGGG	1 cut(s)	483
CseI	GACGC	4 cut(s)	176, 193, 452, 646
CviAII	CATG	2 cut(s)	246, 440
CviJI	RGCY	5 cut(s)	251, 323, 555, 632, 650
CviKI_1	RGCY	5 cut(s)	251, 323, 555, 632, 650
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	3 cut(s)	225, 489, 509
DpnII	GATC	3 cut(s)	223, 487, 507
DraIII	CACNNNGTG	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	145
Eam1105I	GACNNNNNGTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
Esp3I	CGTCTC	2 cut(s)	147, 629
FaeI	CATG	2 cut(s)	249, 443
FaqI	GGGAC	3 cut(s)	11, 25, 97
FatI	CATG	2 cut(s)	245, 439
FauI	CCCGC	3 cut(s)	138, 577, 638
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	651
FokI	GGATG	3 cut(s)	266, 328, 596
Fsp4HI	GCNGC	1 cut(s)	651
FspAI	RTGCGCAY	1 cut(s)	498
FspBI	CTAG	1 cut(s)	458
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	462, 498
GluI	GCNGC	1 cut(s)	651
GsaI	CCCAGC	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	632, 650
HapII	CCGG	3 cut(s)	61, 230, 484
HgaI	GACGC	4 cut(s)	176, 193, 452, 646
HhaI	GCGC	2 cut(s)	463, 499
Hin1I	GRCGYC	2 cut(s)	444, 621
Hin1II	CATG	2 cut(s)	249, 443
Hin6I	GCGC	2 cut(s)	461, 497
HinP1I	GCGC	2 cut(s)	461, 497
HinfI	GANTC	2 cut(s)	24, 514
HpaII	CCGG	3 cut(s)	61, 230, 484
HphI	GGTGA	3 cut(s)	211, 218, 291
Hpy166II	GTNNAC	2 cut(s)	242, 410
Hpy188III	TCNNGA	4 cut(s)	199, 440, 511, 687
Hpy8I	GTNNAC	2 cut(s)	242, 410
Hpy99I	CGWCG	5 cut(s)	187, 507, 605, 623, 626
HpyAV	CCTTC	1 cut(s)	58
HpyCH4IV	ACGT	6 cut(s)	31, 156, 304, 603, 621, 669
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 320
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	6 cut(s)	31, 156, 304, 603, 621, 669
Hsp92I	GRCGYC	2 cut(s)	444, 621
Hsp92II	CATG	2 cut(s)	249, 443
HspAI	GCGC	2 cut(s)	461, 497
Kzo9I	GATC	3 cut(s)	223, 487, 507
LpnPI	CCDG	6 cut(s)	66, 74, 243, 358, 497, 565
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	6 cut(s)	31, 156, 304, 603, 621, 669
MaeIII	GTNAC	2 cut(s)	140, 157
MalI	GATC	3 cut(s)	225, 489, 509
MboI	GATC	3 cut(s)	223, 487, 507
MboII	GAAGA	2 cut(s)	162, 198
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	5 cut(s)	6, 167, 211, 359, 589
MluI	ACGCGT	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	3 cut(s)	307, 448, 690
MnlI	CCTC	6 cut(s)	144, 206, 402, 457, 573, 578
MseI	TTAA	4 cut(s)	9, 89, 119, 492
MspI	CCGG	3 cut(s)	61, 230, 484
MspR9I	CCNGG	3 cut(s)	230, 484, 485
MvnI	CGCG	3 cut(s)	187, 200, 572
MwoI	GCNNNNNNNGC	2 cut(s)	248, 320
NciI	CCSGG	3 cut(s)	230, 484, 485
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	3 cut(s)	223, 487, 507
NlaIII	CATG	2 cut(s)	249, 443
NlaIV	GGNNCC	2 cut(s)	576, 649
NmeAIII	GCCGAG	2 cut(s)	621, 658
NruI	TCGCGA	1 cut(s)	200
NsbI	TGCGCA	1 cut(s)	498
PagI	TCATGA	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	652
PleI	GAGTC	1 cut(s)	32
PmaCI	CACGTG	1 cut(s)	305
PmlI	CACGTG	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	32
Ppu21I	YACGTR	2 cut(s)	32, 305
PspCI	CACGTG	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	551
PspN4I	GGNNCC	2 cut(s)	576, 649
PspPI	GGNCC	2 cut(s)	177, 648
PsuI	RGATCY	1 cut(s)	487
RruI	TCGCGA	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	9, 89, 119, 492
SatI	GCNGC	1 cut(s)	651
Sau3AI	GATC	3 cut(s)	223, 487, 507
Sau96I	GGNCC	2 cut(s)	177, 648
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	3 cut(s)	230, 484, 485
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	34, 159, 307, 325, 394, 606, 624, 672
SinI	GGWCC	1 cut(s)	177
SmaI	CCCGGG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	6, 167, 211, 359, 589
SsiI	CCGC	6 cut(s)	131, 572, 584, 613, 645, 651
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	228, 482, 483
StyI	CCWWGG	1 cut(s)	245
TaiI	ACGT	6 cut(s)	34, 159, 307, 606, 624, 672
TaqI	TCGA	1 cut(s)	675
TasI	AATT	5 cut(s)	6, 167, 211, 359, 589
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	4 cut(s)	9, 89, 119, 492
Tru9I	TTAA	4 cut(s)	9, 89, 119, 492
TscAI	CASTG	1 cut(s)	405
TspDTI	ATGAA	4 cut(s)	87, 268, 428, 649
TspGWI	ACGGA	1 cut(s)	520
TspMI	CCCGGG	1 cut(s)	483
TspRI	CASTG	1 cut(s)	405
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	531
XmaI	CCCGGG	1 cut(s)	483
XmiI	GTMKAC	1 cut(s)	409
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.