Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010739.1

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

8837 .. 9199

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010739.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcgagaaaccgaacccagcccatttcctcccttcgccgatgcctaattgccggaaactactgccacgacattctcatccttgactgcgtcgttttggccgagacgctcggcggggccgcttctttcatctccaacgtgttcgacgacgtttccgtgagctacaatctggtattgaaagtcgggtcagattttgcttactcggtccaccgcgacccgattgtggtatccgattgcaggacgactttgtcccacgcgcattttgattctggaatggaggggggaaggccagcaggatcgggttctgaaacgggtggcctgcgacccaatttgcccctcggatctgcccgaatccaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

120

Amino Acids

12.76

Weight (kDa)

6.38

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccII	CGCG	2 cut(s)	213, 257
AciI	CCGC	3 cut(s)	114, 120, 211
AclWI	GGATC	2 cut(s)	304, 349
AcoI	YGGCCR	1 cut(s)	99
AfiI	CCNNNNNNNGG	3 cut(s)	223, 237, 355
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	304, 349
AoxI	GGCC	4 cut(s)	99, 117, 287, 316
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	117, 205
AvaII	GGWCC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	117, 205
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 237, 355
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	223, 237, 355
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	213, 257
BshFI	GGCC	4 cut(s)	101, 119, 289, 318
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	223, 237, 355
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	4 cut(s)	101, 119, 289, 318
Bsp143I	GATC	2 cut(s)	296, 341
BspACI	CCGC	3 cut(s)	114, 120, 211
BspANI	GGCC	4 cut(s)	101, 119, 289, 318
BspFNI	CGCG	2 cut(s)	213, 257
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	304, 349
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	296, 341
Bst2UI	CCWGG	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	291, 320
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	2 cut(s)	213, 257
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	299, 344
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	296, 341
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	2 cut(s)	213, 257
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	101, 119, 289, 318
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	291, 320
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	117, 205
CseI	GACGC	2 cut(s)	79, 115
CviJI	RGCY	6 cut(s)	22, 101, 119, 162, 289, 318
CviKI_1	RGCY	6 cut(s)	22, 101, 119, 162, 289, 318
DpnI	GATC	2 cut(s)	298, 343
DpnII	GATC	2 cut(s)	296, 341
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	235
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	4 cut(s)	101, 119, 289, 318
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	2 cut(s)	79, 115
HhaI	GCGC	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	2 cut(s)	266, 351
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	190, 232, 307, 341
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	3 cut(s)	95, 149, 152
HpyAV	CCTTC	2 cut(s)	44, 279
HpyCH4IV	ACGT	2 cut(s)	138, 150
HpyCH4V	TGCA	1 cut(s)	237
HpySE526I	ACGT	2 cut(s)	138, 150
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	296, 341
LpnPI	CCDG	9 cut(s)	32, 67, 155, 223, 255, 279, 303, 332, 341
LweI	GCATC	1 cut(s)	32
MaeII	ACGT	2 cut(s)	138, 150
MalI	GATC	2 cut(s)	298, 343
MboI	GATC	2 cut(s)	296, 341
MflI	RGATCY	1 cut(s)	341
MluCI	AATT	2 cut(s)	48, 328
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	40, 271, 347
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	2 cut(s)	213, 257
NdeII	GATC	2 cut(s)	296, 341
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	2 cut(s)	90, 127
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 144, 153
PfeI	GAWTC	2 cut(s)	266, 351
PflFI	GACNNNGTC	2 cut(s)	89, 247
PkrI	GCNGC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	117, 205
PsuI	RGATCY	1 cut(s)	341
PsyI	GACNNNGTC	2 cut(s)	89, 247
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	296, 341
Sau96I	GGNCC	2 cut(s)	117, 205
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	4 cut(s)	141, 153, 164, 360
SfaNI	GCATC	1 cut(s)	32
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	2 cut(s)	48, 328
SsiI	CCGC	3 cut(s)	114, 120, 211
StyD4I	CCNGG	1 cut(s)	354
TaiI	ACGT	2 cut(s)	141, 153
TaqI	TCGA	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	48, 328
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	266, 351
TspDTI	ATGAA	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	2 cut(s)	89, 247
VpaK11BI	GGWCC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.