Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

4519769 .. 4520742

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTTCGGTTCTTAGACATAACAATATATAAAAATACACAAACTTCAAAAGTTAACACACTCTCTCTCTCTCTCTCTCTCTCCTCATTTCTTCAATGGATCCCTAAATCCACCTGCGGATCACACAATCGAATCCAAACCCGCCAAATCCCGCATGGTCGAGGCCCGAATCAACCCAATTCAGCTCCCAGGGTCCTAATCGCCGGCAACTACTGCCACGACATTTTATTCAAAGACGACGTCATTTTGGCAGAGACTCTCGGCGGGGCCGCCTCCTTCATCTCCAATGTCTTCGATGGAGTTTCCGTTCCCTGTAATTTGGTCTCCAAAGTCGGGCCGGACTTCGCTTACTCGGTCCCGCGTGACCCGATTGTTGTACCCGATTGCAAAACCACTCTCTGCCACGCGCATTTTGATTCCGGCGTCGGCGGTGGCGAACGGCGTGACCGGGTTCTGCAACGGGTAAGAGCTTGCGACCCGATTAGGCCCTCGGATCTCCCCGAATACAGATTTGATTTCGGAATGGCTGTCGGTGTCGCCGGTGAGATCACCGTTGAGACGGTGGAGAAGTTGGTTGAGACTTGCAGCACTGTGGTTGTCGACATTCAGGCTCTGATTCGAGCTTTCGACGGAGTCGACGGGACCGTGAAGCTTGTGGGTTTGAAGGAGAGTGGCTTCTTCCACCTCTTGCCGCGAATTGGGTTTTTGAAGGCTTCGGCGGAGGAGGCGTTGTTTTTGGAGCTGGAGGAGGTGAGGAAGCTCTGCTGTGTTGTGGTGACGAACGGGAGGCGTGGGTGTAAAGTTTATTGGGGAGACGGTGAGGTGGAAGTTGGACTTTTCCGACGAACCAGGTTGATCGATCGACGGGCGCAGGAGACAGTTTCCTTGGTGGGTTTGTCGCCGGACTTGTTAATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

307

Amino Acids

33.63

Weight (kDa)

6.99

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
AatII	GACGTC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	600, 636
AccII	CGCG	3 cut(s)	361, 407, 694
AciI	CCGC	9 cut(s)	117, 142, 152, 264, 270, 359, 429, 692, 719
AclWI	GGATC	4 cut(s)	94, 107, 127, 501
AcyI	GRCGYC	2 cut(s)	240, 423
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	333, 698
AgsI	TTSAA	5 cut(s)	48, 95, 232, 664, 709
AjnI	CCWGG	2 cut(s)	188, 848
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	6 cut(s)	185, 470, 623, 652, 742, 760
AluI	AGCT	6 cut(s)	185, 470, 623, 652, 742, 760
Alw26I	GTCTC	6 cut(s)	248, 328, 551, 572, 807, 869
AlwI	GGATC	4 cut(s)	94, 107, 127, 501
AlwNI	CAGNNNCTG	1 cut(s)	613
AoxI	GGCC	4 cut(s)	163, 267, 335, 485
ApeKI	GCWGC	1 cut(s)	585
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspLEI	GCGC	2 cut(s)	409, 871
AspS9I	GGNCC	7 cut(s)	164, 193, 267, 335, 355, 486, 642
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	5 cut(s)	541, 554, 763, 787, 830
AvaII	GGWCC	3 cut(s)	193, 355, 642
BamHI	GGATCC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	190, 850
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	6 cut(s)	248, 328, 551, 572, 807, 869
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	270, 586, 692
BlsI	GCNGC	3 cut(s)	271, 587, 693
Bme1390I	CCNGG	3 cut(s)	190, 449, 850
Bme18I	GGWCC	3 cut(s)	193, 355, 642
BmgT120I	GGNCC	7 cut(s)	164, 193, 267, 335, 355, 486, 642
BmiI	GGNNCC	5 cut(s)	101, 194, 268, 357, 643
BmrFI	CCNGG	3 cut(s)	190, 449, 850
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	449
Bsa29I	ATCGAT	1 cut(s)	858
BsaHI	GRCGYC	2 cut(s)	240, 423
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	4 cut(s)	188, 189, 489, 885
BsaXI	ACNNNNNCTCC	6 cut(s)	291, 321, 713, 716, 743, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 698
Bse118I	RCCGGY	2 cut(s)	203, 539
BseBI	CCWGG	2 cut(s)	190, 850
BseCI	ATCGAT	1 cut(s)	858
BseDI	CCNNGG	4 cut(s)	188, 189, 489, 885
BseLI	CCNNNNNNNGG	2 cut(s)	333, 698
BseRI	GAGGAG	3 cut(s)	73, 737, 761
BseXI	GCAGC	1 cut(s)	597
Bsh1236I	CGCG	3 cut(s)	361, 407, 694
Bsh1285I	CGRYCG	1 cut(s)	862
BshFI	GGCC	4 cut(s)	165, 269, 337, 487
BshVI	ATCGAT	1 cut(s)	858
BsiEI	CGRYCG	1 cut(s)	862
BsiSI	CCGG	6 cut(s)	204, 338, 420, 448, 540, 902
BslFI	GGGAC	2 cut(s)	341, 655
BslI	CCNNNNNNNGG	2 cut(s)	333, 698
BsmAI	GTCTC	6 cut(s)	248, 328, 551, 572, 807, 869
BsmBI	CGTCTC	2 cut(s)	551, 807
BsmFI	GGGAC	2 cut(s)	341, 655
BsnI	GGCC	4 cut(s)	165, 269, 337, 487
Bso31I	GGTCTC	1 cut(s)	328
Bsp143I	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
BspACI	CCGC	9 cut(s)	117, 142, 152, 264, 270, 359, 429, 692, 719
BspANI	GGCC	4 cut(s)	165, 269, 337, 487
BspDI	ATCGAT	1 cut(s)	858
BspFNI	CGCG	3 cut(s)	361, 407, 694
BspLI	GGNNCC	5 cut(s)	101, 194, 268, 357, 643
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	4 cut(s)	94, 107, 127, 501
BspTNI	GGTCTC	1 cut(s)	328
BsrFI	RCCGGY	2 cut(s)	203, 539
BssAI	RCCGGY	2 cut(s)	203, 539
BssECI	CCNNGG	4 cut(s)	188, 189, 489, 885
BssMI	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
BssNI	GRCGYC	2 cut(s)	240, 423
BssT1I	CCWWGG	1 cut(s)	885
Bst2UI	CCWGG	2 cut(s)	190, 850
Bst4CI	ACNGT	6 cut(s)	553, 562, 592, 646, 818, 880
BstACI	GRCGYC	2 cut(s)	240, 423
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	205, 472
BstDEI	CTNAG	1 cut(s)	13
BstFNI	CGCG	3 cut(s)	361, 407, 694
BstHHI	GCGC	2 cut(s)	409, 871
BstKTI	GATC	6 cut(s)	102, 122, 496, 549, 858, 862
BstMAI	GTCTC	6 cut(s)	248, 328, 551, 572, 807, 869
BstMBI	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
BstMCI	CGRYCG	1 cut(s)	862
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 725
BstNI	CCWGG	2 cut(s)	190, 850
BstSCI	CCNGG	3 cut(s)	188, 447, 848
BstUI	CGCG	3 cut(s)	361, 407, 694
BstV1I	GCAGC	1 cut(s)	597
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	99, 493
BstYI	RGATCY	2 cut(s)	99, 493
Bsu15I	ATCGAT	1 cut(s)	858
BsuRI	GGCC	4 cut(s)	165, 269, 337, 487
BsuTUI	ATCGAT	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	588
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	205, 472
CaiI	CAGNNNCTG	1 cut(s)	613
CfoI	GCGC	2 cut(s)	409, 871
Cfr10I	RCCGGY	2 cut(s)	203, 539
Cfr13I	GGNCC	7 cut(s)	164, 193, 267, 335, 355, 486, 642
ClaI	ATCGAT	1 cut(s)	858
CseI	GACGC	1 cut(s)	412
CsiI	ACCWGGT	1 cut(s)	848
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	1 cut(s)	155
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	6 cut(s)	101, 121, 495, 548, 857, 861
DpnII	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
EciI	GGCGGA	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	3 cut(s)	193, 355, 642
EcoO109I	RGGNCCY	2 cut(s)	193, 486
EcoRII	CCWGG	2 cut(s)	188, 848
EcoT14I	CCWWGG	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	885
Esp3I	CGTCTC	2 cut(s)	551, 807
FaeI	CATG	1 cut(s)	158
FaiI	YATR	4 cut(s)	20, 28, 30, 156
FalI	AAGNNNNNCTT	2 cut(s)	819, 851
FaqI	GGGAC	2 cut(s)	341, 655
FatI	CATG	1 cut(s)	154
FauI	CCCGC	4 cut(s)	149, 159, 257, 366
FblI	GTMKAC	2 cut(s)	600, 636
Fnu4HI	GCNGC	3 cut(s)	270, 586, 692
Fsp4HI	GCNGC	3 cut(s)	270, 586, 692
GlaI	GCGC	2 cut(s)	408, 870
GluI	GCNGC	3 cut(s)	270, 586, 692
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	4 cut(s)	165, 269, 337, 487
HapII	CCGG	6 cut(s)	204, 338, 420, 448, 540, 902
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	2 cut(s)	409, 871
Hin1I	GRCGYC	2 cut(s)	240, 423
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	2 cut(s)	407, 869
HinP1I	GCGC	2 cut(s)	407, 869
HincII	GTYRAC	3 cut(s)	55, 601, 637
HindII	GTYRAC	3 cut(s)	55, 601, 637
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	6 cut(s)	132, 169, 256, 416, 616, 633
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	6 cut(s)	204, 338, 420, 448, 540, 902
HphI	GGTGA	5 cut(s)	541, 554, 763, 787, 830
Hpy166II	GTNNAC	3 cut(s)	55, 601, 637
Hpy188I	TCNGA	4 cut(s)	493, 521, 615, 842
Hpy8I	GTNNAC	3 cut(s)	55, 601, 637
Hpy99I	CGWCG	6 cut(s)	242, 428, 632, 641, 846, 867
HpyAV	CCTTC	3 cut(s)	286, 658, 703
HpyCH4III	ACNGT	6 cut(s)	553, 562, 592, 646, 818, 880
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	387, 457, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 725
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	2 cut(s)	240, 423
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	2 cut(s)	407, 869
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
LmnI	GCTCC	2 cut(s)	190, 739
Lsp1109I	GCAGC	1 cut(s)	597
MabI	ACCWGGT	1 cut(s)	848
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	362, 443, 775
MalI	GATC	6 cut(s)	101, 121, 495, 548, 857, 861
MboI	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
MboII	GAAGA	3 cut(s)	83, 283, 670
MflI	RGATCY	2 cut(s)	99, 493
MluCI	AATT	3 cut(s)	178, 316, 696
MlyI	GAGTC	2 cut(s)	250, 642
MmeI	TCCRAC	2 cut(s)	811, 865
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	2 cut(s)	54, 911
MspI	CCGG	6 cut(s)	204, 338, 420, 448, 540, 902
MspR9I	CCNGG	3 cut(s)	190, 449, 850
MvaI	CCWGG	2 cut(s)	190, 850
MvnI	CGCG	3 cut(s)	361, 407, 694
MwoI	GCNNNNNNNGC	2 cut(s)	213, 725
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	5 cut(s)	101, 194, 268, 357, 643
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	3 cut(s)	362, 443, 775
PaqCI	CACCTGC	1 cut(s)	122
PasI	CCCWGGG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	3 cut(s)	432, 633, 642
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	4 cut(s)	132, 169, 416, 616
PflFI	GACNNNGTC	2 cut(s)	239, 632
PkrI	GCNGC	3 cut(s)	271, 587, 693
Ple19I	CGATCG	1 cut(s)	862
PleI	GAGTC	2 cut(s)	250, 641
PpsI	GAGTC	2 cut(s)	250, 641
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	188, 848
PspGI	CCWGG	2 cut(s)	188, 848
PspN4I	GGNNCC	5 cut(s)	101, 194, 268, 357, 643
PspPI	GGNCC	7 cut(s)	164, 193, 267, 335, 355, 486, 642
PspPPI	RGGWCCY	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	99, 493
PsyI	GACNNNGTC	2 cut(s)	239, 632
PvuI	CGATCG	1 cut(s)	862
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SalI	GTCGAC	2 cut(s)	599, 635
SaqAI	TTAA	2 cut(s)	54, 911
SatI	GCNGC	3 cut(s)	270, 586, 692
Sau3AI	GATC	6 cut(s)	99, 119, 493, 546, 855, 859
Sau96I	GGNCC	7 cut(s)	164, 193, 267, 335, 355, 486, 642
SchI	GAGTC	2 cut(s)	250, 642
ScrFI	CCNGG	3 cut(s)	190, 449, 850
SexAI	ACCWGGT	1 cut(s)	848
SgrAI	CRCCGGYG	1 cut(s)	539
SinI	GGWCC	3 cut(s)	193, 355, 642
Sse9I	AATT	3 cut(s)	178, 316, 696
SsiI	CCGC	9 cut(s)	117, 142, 152, 264, 270, 359, 429, 692, 719
StyD4I	CCNGG	3 cut(s)	188, 447, 848
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	6 cut(s)	553, 562, 592, 646, 818, 880
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	9 cut(s)	130, 160, 294, 600, 619, 627, 636, 858, 862
TaqII	GACCGA	1 cut(s)	343
TasI	AATT	3 cut(s)	178, 316, 696
TauI	GCSGC	2 cut(s)	272, 694
TfiI	GAWTC	4 cut(s)	132, 169, 416, 616
Tru1I	TTAA	2 cut(s)	54, 911
Tru9I	TTAA	2 cut(s)	54, 911
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	3 cut(s)	362, 443, 775
TseI	GCWGC	1 cut(s)	585
Tsp45I	GTSAC	3 cut(s)	362, 443, 775
TspDTI	ATGAA	1 cut(s)	268
TspGWI	ACGGA	2 cut(s)	295, 645
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	2 cut(s)	239, 632
VpaK11BI	GGWCC	3 cut(s)	193, 355, 642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmiI	GTMKAC	2 cut(s)	600, 636
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.