Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Forward (+)

18728270 .. 18728689

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGGAGAAACCGAACCCAGCCCATTTCCTCCCCTCCCCGGTGCCTGATTGCCAGAAACTACTGCCACGACATTCTCATCCGCTACTGCATCATTTCGGCCGAGATGCTCGACGGGGCTGCTTCTTTCATCTCCAACGTGTTCGACGGCGTTTCCGTGAGCTACAATCTGGTATCGAAAGTCGGGTCAGATTTTGCTTACTCGGTCCGCCGCGACCCGATTGTGGTATCCGATTGCAGGATGACTCTGTCCCACGCGCATTTTGATTCTGGAATCAAGGGGGAAGGCCAGCAGGATCGGGTTCTGAAGCGGGTGGCCTGCGACCCGATTTGCCCCTCGAATCTGCCCGAATCTAGGTTTGATTTCGGAATGGCAATTGGGGTCGGCAGCGAGATTACGGTGGAGACGGTTGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

139

Amino Acids

15.26

Weight (kDa)

5.87

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccII	CGCG	2 cut(s)	213, 257
AciI	CCGC	4 cut(s)	82, 208, 211, 310
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
AflIII	ACRYGT	1 cut(s)	138
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	3 cut(s)	99, 286, 315
ApeKI	GCWGC	2 cut(s)	119, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	106, 399
BceAI	ACGGC	1 cut(s)	163
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	354, 418
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	120, 211, 388
BlsI	GCNGC	3 cut(s)	121, 212, 389
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	96, 99
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	78, 246
BseLI	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	106, 399
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	213, 257
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	101, 288, 317
BshNI	GGYRCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	4 cut(s)	39, 223, 237, 354
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	101, 288, 317
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	4 cut(s)	82, 208, 211, 310
BspANI	GGCC	3 cut(s)	101, 288, 317
BspFNI	CGCG	2 cut(s)	213, 257
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	400, 409
BstC8I	GCNNGC	2 cut(s)	290, 319
BstF5I	GGATG	2 cut(s)	78, 246
BstFNI	CGCG	2 cut(s)	213, 257
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	295
BstMCI	CGRYCG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	38
BstUI	CGCG	2 cut(s)	213, 257
BstV1I	GCAGC	2 cut(s)	106, 399
BstZI	CGGCCG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	101, 288, 317
BtsCI	GGATG	2 cut(s)	78, 246
Cac8I	GCNNGC	2 cut(s)	290, 319
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	205
CpoI	CGGWCCG	1 cut(s)	205
CspI	CGGWCCG	1 cut(s)	205
CviJI	RGCY	6 cut(s)	22, 101, 119, 162, 288, 317
CviKI_1	RGCY	6 cut(s)	22, 101, 119, 162, 288, 317
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	205
Eco52I	CGGCCG	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	326
Esp3I	CGTCTC	1 cut(s)	398
FaqI	GGGAC	1 cut(s)	235
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	120, 211, 388
FokI	GGATG	2 cut(s)	65, 253
Fsp4HI	GCNGC	3 cut(s)	120, 211, 388
FspBI	CTAG	2 cut(s)	354, 418
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	120, 211, 388
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	3 cut(s)	101, 288, 317
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	5 cut(s)	244, 266, 273, 340, 350
HpaII	CCGG	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	190, 232, 306, 368
Hpy188III	TCNNGA	1 cut(s)	270
Hpy99I	CGWCG	2 cut(s)	116, 149
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	400, 409
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	90, 237
HpySE526I	ACGT	1 cut(s)	138
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	106, 399
LweI	GCATC	2 cut(s)	96, 99
MaeI	CTAG	2 cut(s)	354, 418
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MfeI	CAATTG	1 cut(s)	375
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	40, 45, 346
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	375
MvnI	CGCG	2 cut(s)	213, 257
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	4 cut(s)	266, 273, 340, 350
PflFI	GACNNNGTC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	121, 212, 389
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	247
Rsr2I	CGGWCCG	1 cut(s)	205
RsrII	CGGWCCG	1 cut(s)	205
SatI	GCNGC	3 cut(s)	120, 211, 388
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	3 cut(s)	141, 164, 359
SfaNI	GCATC	2 cut(s)	96, 99
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	4 cut(s)	82, 208, 211, 310
SspMI	CTAG	2 cut(s)	354, 418
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	400, 409
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	111, 144, 176, 338
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	375
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	4 cut(s)	266, 273, 340, 350
TseI	GCWGC	2 cut(s)	119, 387
TspDTI	ATGAA	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	205
XspI	CTAG	2 cut(s)	354, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.