Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

61725470 .. 61726229

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGGAGAAACCGAACCCAGCCCATTTCCTCCCCTTGCGGATGCTTGATTGCCGGAAACTACTGCCACGACGTTCTCATCCGCGACTGCGTCGTTTTGGCCGAGATGCTCGGCGGGGCCGCTTCTTTCATCTCCAACGTGTTCGACGGCGTTTCCGTGAGCTACAATCTGGTATCGAAAGTCGGGTTGGATTTTGCTTACTCGGTCCACCGCGACCCGATTGTGGTATCTGATTGCAGGACGACTCTGTCCCACGCGCATTTTGATTCTGGAATCGAGGGGGAAGGACAGCAAGATCGAGTTCTGAAGTGGGTGGCATGCGACCCGATTTGCCCCTCGGATCTACCCGAATCCAGGTTTGATTTCGGAATGGCAATTGGGATTTGCGGCACTGTGCTTGTGGACATTCAAGCTCTGTTTCTGGTTTTTGATGGGGTTGATGGGGCTGTGAAGCTTGTGGGTTTGAAAGAGAGTGGGTTCTTTCACCTCTTGCCCAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGACCTTGGTGAAGATCATAAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACCTTGGTGAAAAGATCCAAAAGAGGGTGTTTTAGGAAGTATAAAGATAGAGACATGAAATATTATTTAAAAAATGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

225

Amino Acids

25.68

Weight (kDa)

8.84

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccII	CGCG	3 cut(s)	84, 213, 257
AciI	CCGC	6 cut(s)	39, 82, 114, 120, 211, 387
AclWI	GGATC	2 cut(s)	348, 603
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	223, 354, 618
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	410, 466
AjnI	CCWGG	1 cut(s)	353
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	3 cut(s)	162, 413, 454
AluI	AGCT	3 cut(s)	162, 413, 454
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	2 cut(s)	348, 603
AoxI	GGCC	2 cut(s)	99, 117
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	4 cut(s)	117, 205, 537, 594
AsuHPI	GGTGA	3 cut(s)	476, 556, 613
AvaII	GGWCC	3 cut(s)	205, 537, 594
BccI	CCATC	2 cut(s)	425, 434
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	639
BisI	GCNGC	2 cut(s)	120, 388
BlsI	GCNGC	2 cut(s)	121, 389
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	3 cut(s)	205, 537, 594
BmgT120I	GGNCC	4 cut(s)	117, 205, 537, 594
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	2 cut(s)	32, 96
BsaJI	CCNNGG	3 cut(s)	336, 540, 597
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 354, 618
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	3 cut(s)	336, 540, 597
BseGI	GGATG	2 cut(s)	47, 78
BseLI	CCNNNNNNNGG	3 cut(s)	223, 354, 618
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	3 cut(s)	84, 213, 257
BshFI	GGCC	2 cut(s)	101, 119
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	223, 354, 618
BsmAI	GTCTC	1 cut(s)	639
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	101, 119
Bsp143I	GATC	4 cut(s)	295, 340, 549, 608
BspACI	CCGC	6 cut(s)	39, 82, 114, 120, 211, 387
BspANI	GGCC	2 cut(s)	101, 119
BspFNI	CGCG	3 cut(s)	84, 213, 257
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	348, 603
BssECI	CCNNGG	3 cut(s)	336, 540, 597
BssMI	GATC	4 cut(s)	295, 340, 549, 608
BssT1I	CCWWGG	2 cut(s)	540, 597
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	493, 554
BstC8I	GCNNGC	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	47, 78
BstFNI	CGCG	3 cut(s)	84, 213, 257
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	298, 343, 552, 611
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	4 cut(s)	295, 340, 549, 608
BstNI	CCWGG	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	353
BstUI	CGCG	3 cut(s)	84, 213, 257
BstX2I	RGATCY	2 cut(s)	340, 608
BstYI	RGATCY	2 cut(s)	340, 608
BsuRI	GGCC	2 cut(s)	101, 119
BtsCI	GGATG	2 cut(s)	47, 78
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	4 cut(s)	117, 205, 537, 594
CseI	GACGC	1 cut(s)	79
CviAII	CATG	2 cut(s)	318, 649
CviJI	RGCY	7 cut(s)	22, 101, 119, 162, 413, 446, 454
CviKI_1	RGCY	7 cut(s)	22, 101, 119, 162, 413, 446, 454
DpnI	GATC	4 cut(s)	297, 342, 551, 610
DpnII	GATC	4 cut(s)	295, 340, 549, 608
DraI	TTTAAA	1 cut(s)	663
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	493, 554
EarI	CTCTTC	2 cut(s)	493, 554
Eco130I	CCWWGG	2 cut(s)	540, 597
Eco47I	GGWCC	3 cut(s)	205, 537, 594
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	2 cut(s)	537, 594
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	2 cut(s)	540, 597
ErhI	CCWWGG	2 cut(s)	540, 597
FaeI	CATG	2 cut(s)	321, 652
FaiI	YATR	4 cut(s)	319, 554, 636, 650
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	317, 648
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	120, 388
FokI	GGATG	2 cut(s)	54, 65
Fsp4HI	GCNGC	2 cut(s)	120, 388
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	120, 388
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	101, 119
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	321, 652
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	4 cut(s)	244, 266, 273, 350
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	476, 556, 613
Hpy166II	GTNNAC	2 cut(s)	208, 403
Hpy188I	TCNGA	4 cut(s)	232, 306, 340, 368
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	2 cut(s)	208, 403
Hpy99I	CGWCG	3 cut(s)	74, 95, 149
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	2 cut(s)	72, 138
HpyCH4V	TGCA	1 cut(s)	237
HpySE526I	ACGT	2 cut(s)	72, 138
Hsp92II	CATG	2 cut(s)	321, 652
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	295, 340, 549, 608
LpnPI	CCDG	9 cut(s)	32, 67, 155, 223, 255, 340, 367, 407, 508
LweI	GCATC	2 cut(s)	32, 96
MaeII	ACGT	2 cut(s)	72, 138
MalI	GATC	4 cut(s)	297, 342, 551, 610
MboI	GATC	4 cut(s)	295, 340, 549, 608
MboII	GAAGA	3 cut(s)	510, 559, 571
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	340, 608
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	159, 168
MnlI	CCTC	7 cut(s)	40, 271, 346, 497, 528, 585, 611
MseI	TTAA	1 cut(s)	662
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	355
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	355
MvnI	CGCG	3 cut(s)	84, 213, 257
NdeII	GATC	4 cut(s)	295, 340, 549, 608
NlaIII	CATG	2 cut(s)	321, 652
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	2 cut(s)	90, 127
NspI	RCATGY	1 cut(s)	321
PaeI	GCATGC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 153
PfeI	GAWTC	3 cut(s)	266, 273, 350
PflFI	GACNNNGTC	2 cut(s)	89, 247
PkrI	GCNGC	2 cut(s)	121, 389
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PpuMI	RGGWCCY	2 cut(s)	537, 594
Psp5II	RGGWCCY	2 cut(s)	537, 594
Psp6I	CCWGG	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	4 cut(s)	117, 205, 537, 594
PspPPI	RGGWCCY	2 cut(s)	537, 594
PsuI	RGATCY	2 cut(s)	340, 608
PsyI	GACNNNGTC	2 cut(s)	89, 247
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	2 cut(s)	120, 388
Sau3AI	GATC	4 cut(s)	295, 340, 549, 608
Sau96I	GGNCC	4 cut(s)	117, 205, 537, 594
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	9 cut(s)	75, 141, 164, 359, 415, 456, 489, 542, 599
SfaNI	GCATC	2 cut(s)	32, 96
SinI	GGWCC	3 cut(s)	205, 537, 594
SphI	GCATGC	1 cut(s)	321
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	6 cut(s)	39, 82, 114, 120, 211, 387
SspI	AATATT	1 cut(s)	656
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	2 cut(s)	540, 597
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	2 cut(s)	75, 141
TaqI	TCGA	4 cut(s)	144, 176, 276, 298
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	375
TauI	GCSGC	2 cut(s)	122, 390
TfiI	GAWTC	3 cut(s)	266, 273, 350
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	118, 665
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	2 cut(s)	89, 247
VpaK11BI	GGWCC	3 cut(s)	205, 537, 594
XceI	RCATGY	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.