Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000201.1

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Forward (+)

9229 .. 11579

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000201.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgacactgattcaaattaaaggccaaaaccaaaaccaaaatctcctcacactccctactgcgtctccccaaaaccaaaacctacaaccttcaccgcctacacttcaaatccatcggatccaagacctctgttctacgccgacaccaaattcatcggatccaaaacctagatctctctcctctctccctcttatcttctacacggctacacctataccccaaatccatctctccgacaaccaaactagtagtaaactaaacttgttgctcatggcttctactttggccacttcctttgcttctgccccacccaaagcggggaagagtaattccaatcctccgccgacgacgaggagccctaacaaaagcagtaaagcagcagaagaagaagaagccgttgaagaagtggaagaggatctaccctggattcaagaaaaggccttggacctggtggagttcaccagctctgtcacgcaggccattcctggacccagagttggcaccagctccctcccttggattttggctattcctctcgcttatgccggtctcaattttgtcatcgctgttgtcaagaccgtgaaaaagttctcttcccctcgacataaacgcaagaaactgacaggttttggcatggaggagattttgcgcaagtgcatccgttatactttgaatgaaaagccattcaactcagacatggtttccaatttaattcagctcagaaaagcttctttgtttgatgattctcaggtggctaaaattctaaatgaaatttcaagaagaattgtgcgagacaaaggcccagttgtaatggatatggcaggttatactgaacagggtttcaaaagaaaattagccgttcaagccctatatggaaaggtgttctatctgtcagagggttatggcattgatgataactgtgacatatctattattgatggccattgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

34.83

Weight (kDa)

8.91

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	812
AccB1I	GGYRCC	1 cut(s)	500
AciI	CCGC	3 cut(s)	95, 317, 341
AclWI	GGATC	5 cut(s)	112, 125, 152, 165, 423
AcoI	YGGCCR	2 cut(s)	285, 940
AcsI	RAATTY	3 cut(s)	148, 759, 771
AfiI	CCNNNNNNNGG	4 cut(s)	317, 318, 497, 516
AgsI	TTSAA	9 cut(s)	14, 107, 401, 431, 673, 688, 777, 844, 863
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	3 cut(s)	422, 447, 484
AluBI	AGCT	4 cut(s)	465, 507, 718, 728
AluI	AGCT	4 cut(s)	465, 507, 718, 728
Alw26I	GTCTC	3 cut(s)	69, 554, 786
AlwI	GGATC	5 cut(s)	112, 125, 152, 165, 423
AoxI	GGCC	6 cut(s)	22, 285, 438, 477, 799, 940
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	3 cut(s)	148, 759, 771
Asp700I	GAANNNNTTC	2 cut(s)	587, 727
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	3 cut(s)	445, 488, 800
AsuHPI	GGTGA	2 cut(s)	84, 451
AvaII	GGWCC	2 cut(s)	445, 488
BalI	TGGCCA	2 cut(s)	287, 942
BamHI	GGATCC	2 cut(s)	117, 157
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	402, 434
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	3 cut(s)	120, 234, 932
BceAI	ACGGC	3 cut(s)	219, 380, 842
BciT130I	CCWGG	3 cut(s)	424, 449, 486
BcoDI	GTCTC	3 cut(s)	69, 554, 786
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	168, 246
BfuAI	ACCTGC	1 cut(s)	812
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	3 cut(s)	424, 449, 486
Bme18I	GGWCC	2 cut(s)	445, 488
BmgT120I	GGNCC	3 cut(s)	445, 488, 800
BmiI	GGNNCC	5 cut(s)	119, 159, 356, 490, 502
BmrFI	CCNGG	3 cut(s)	424, 449, 486
BmrI	ACTGGG	1 cut(s)	797
BmsI	GCATC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	797
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	422, 441, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 318, 497, 516
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	803
BseBI	CCWGG	3 cut(s)	424, 449, 486
BseDI	CCNNGG	3 cut(s)	422, 441, 515
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	4 cut(s)	317, 318, 497, 516
BseMII	CTCAG	3 cut(s)	705, 733, 761
BseNI	ACTGG	1 cut(s)	803
BseRI	GAGGAG	4 cut(s)	35, 169, 367, 653
BseXI	GCAGC	1 cut(s)	389
BshFI	GGCC	6 cut(s)	24, 287, 440, 479, 801, 942
BshNI	GGYRCC	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	546
BslI	CCNNNNNNNGG	4 cut(s)	317, 318, 497, 516
BsmAI	GTCTC	3 cut(s)	69, 554, 786
BsmBI	CGTCTC	1 cut(s)	69
BsnI	GGCC	6 cut(s)	24, 287, 440, 479, 801, 942
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	117, 157, 170, 415
BspACI	CCGC	3 cut(s)	95, 317, 341
BspANI	GGCC	6 cut(s)	24, 287, 440, 479, 801, 942
BspCNI	CTCAG	3 cut(s)	704, 732, 760
BspLI	GGNNCC	5 cut(s)	119, 159, 356, 490, 502
BspMI	ACCTGC	1 cut(s)	812
BspPI	GGATC	5 cut(s)	112, 125, 152, 165, 423
BspT107I	GGYRCC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	803
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	3 cut(s)	422, 441, 515
BssMI	GATC	4 cut(s)	117, 157, 170, 415
BssT1I	CCWWGG	2 cut(s)	441, 515
Bst2UI	CCWGG	3 cut(s)	424, 449, 486
Bst4CI	ACNGT	2 cut(s)	580, 920
Bst6I	CTCTTC	3 cut(s)	317, 405, 598
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	691, 719, 747
BstF5I	GGATG	1 cut(s)	657
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	4 cut(s)	120, 160, 173, 418
BstMAI	GTCTC	3 cut(s)	69, 554, 786
BstMBI	GATC	4 cut(s)	117, 157, 170, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	863
BstNI	CCWGG	3 cut(s)	424, 449, 486
BstSCI	CCNGG	3 cut(s)	422, 447, 484
BstV1I	GCAGC	1 cut(s)	389
BstX2I	RGATCY	4 cut(s)	117, 157, 170, 415
BstYI	RGATCY	4 cut(s)	117, 157, 170, 415
BsuRI	GGCC	6 cut(s)	24, 287, 440, 479, 801, 942
BtgZI	GCGATG	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	5
BveI	ACCTGC	1 cut(s)	812
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	651
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	3 cut(s)	445, 488, 800
CseI	GACGC	1 cut(s)	51
CsiI	ACCWGGT	1 cut(s)	447
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	3 cut(s)	271, 634, 697
DdeI	CTNAG	3 cut(s)	691, 719, 747
DpnI	GATC	4 cut(s)	119, 159, 172, 417
DpnII	GATC	4 cut(s)	117, 157, 170, 415
EaeI	YGGCCR	2 cut(s)	285, 940
Eam1104I	CTCTTC	3 cut(s)	317, 405, 598
EarI	CTCTTC	3 cut(s)	317, 405, 598
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	441, 515
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	445, 488
EcoRII	CCWGG	3 cut(s)	422, 447, 484
EcoT14I	CCWWGG	2 cut(s)	441, 515
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	441, 515
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	3 cut(s)	274, 637, 700
FatI	CATG	3 cut(s)	270, 633, 696
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	2 cut(s)	168, 246
FspI	TGCGCA	1 cut(s)	650
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	6 cut(s)	24, 287, 440, 479, 801, 942
HapII	CCGG	1 cut(s)	546
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	651
Hin1II	CATG	3 cut(s)	274, 637, 700
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	3 cut(s)	10, 427, 743
HpaII	CCGG	1 cut(s)	546
HphI	GGTGA	2 cut(s)	84, 451
Hpy166II	GTNNAC	2 cut(s)	254, 459
Hpy188I	TCNGA	6 cut(s)	117, 157, 235, 694, 722, 895
Hpy188III	TCNNGA	3 cut(s)	431, 574, 777
Hpy8I	GTNNAC	2 cut(s)	254, 459
Hpy99I	CGWCG	2 cut(s)	349, 352
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	580, 920
HpyCH4V	TGCA	1 cut(s)	657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	863
HpyF3I	CTNAG	3 cut(s)	691, 719, 747
Hsp92II	CATG	3 cut(s)	274, 637, 700
HspAI	GCGC	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	117, 157, 170, 415
LmnI	GCTCC	2 cut(s)	354, 512
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	666
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	2 cut(s)	168, 246
MaeIII	GTNAC	2 cut(s)	469, 920
MalI	GATC	4 cut(s)	119, 159, 172, 417
MboI	GATC	4 cut(s)	117, 157, 170, 415
MboII	GAAGA	9 cut(s)	187, 334, 395, 398, 401, 413, 422, 585, 792
MflI	RGATCY	4 cut(s)	117, 157, 170, 415
MhlI	GDGCHC	1 cut(s)	359
MlsI	TGGCCA	2 cut(s)	287, 942
MluNI	TGGCCA	2 cut(s)	287, 942
MmeI	TCCRAC	1 cut(s)	258
Mox20I	TGGCCA	2 cut(s)	287, 942
MroXI	GAANNNNTTC	2 cut(s)	587, 727
MscI	TGGCCA	2 cut(s)	287, 942
MseI	TTAA	3 cut(s)	18, 710, 949
Msp20I	TGGCCA	2 cut(s)	287, 942
MspI	CCGG	1 cut(s)	546
MspR9I	CCNGG	3 cut(s)	424, 449, 486
MvaI	CCWGG	3 cut(s)	424, 449, 486
MwoI	GCNNNNNNNGC	1 cut(s)	863
NdeII	GATC	4 cut(s)	117, 157, 170, 415
NlaIII	CATG	3 cut(s)	274, 637, 700
NlaIV	GGNNCC	5 cut(s)	119, 159, 356, 490, 502
NmuCI	GTSAC	2 cut(s)	469, 920
NsbI	TGCGCA	1 cut(s)	650
PceI	AGGCCT	1 cut(s)	440
PdmI	GAANNNNTTC	2 cut(s)	587, 727
PfeI	GAWTC	3 cut(s)	10, 427, 743
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	422, 447, 484
PspGI	CCWGG	3 cut(s)	422, 447, 484
PspN4I	GGNNCC	5 cut(s)	119, 159, 356, 490, 502
PspPI	GGNCC	3 cut(s)	445, 488, 800
PsuI	RGATCY	4 cut(s)	117, 157, 170, 415
SaqAI	TTAA	3 cut(s)	18, 710, 949
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	4 cut(s)	117, 157, 170, 415
Sau96I	GGNCC	3 cut(s)	445, 488, 800
ScrFI	CCNGG	3 cut(s)	424, 449, 486
SduI	GDGCHC	1 cut(s)	359
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	1 cut(s)	666
SinI	GGWCC	2 cut(s)	445, 488
SpeI	ACTAGT	1 cut(s)	245
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	3 cut(s)	95, 317, 341
SspMI	CTAG	2 cut(s)	168, 246
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	3 cut(s)	422, 447, 484
StyI	CCWWGG	2 cut(s)	441, 515
TaaI	ACNGT	2 cut(s)	580, 920
TaqI	TCGA	1 cut(s)	601
TfiI	GAWTC	3 cut(s)	10, 427, 743
Tru1I	TTAA	3 cut(s)	18, 710, 949
Tru9I	TTAA	3 cut(s)	18, 710, 949
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	469, 920
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	2 cut(s)	469, 920
TspDTI	ATGAA	3 cut(s)	141, 690, 783
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	445, 488
XapI	RAATTY	3 cut(s)	148, 759, 771
XmnI	GAANNNNTTC	2 cut(s)	587, 727
XspI	CTAG	2 cut(s)	168, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.