MD03G1070700.v1.1

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
5773425 .. 5775033
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1070700.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGGTCGAGGCCCGAATCAATCCAATTCAGCTCCCCGGGTCCTAATCGCCGGCAACTACTGCCACGACGTTTTATTCAAAGACGGCGTCGTTTTGGCCGAGACTCCCGGCGGGGCCGCCTCCTTCATCTCCAATGTCTTCGATGGAGTTTCCGTTCCCTACAATTTGGTGTCCAAAGTCGGGTCGGACTTCGCTTACTCGGTCCCGCGTGACCCGATTGTTGTACCCGATTGCAATACCACTCTCTTCCACGCGCATTTTGATTCCGGCGTCGGCGGTGACGAACGGCGTGACCGGGTTCTGCAACGGGTAAGAGCTTGCGGCCCGATTAGGCCCTCGGATCTCCCCGGATACAGATTTGATTTCGGAATGGCTGTCGGTGTTGGCGGCGAGATCACCGTTGAGACGGTGGAGAAGTTGGTTGAGACTTGCAGCACTGTGTTTGTGGACATTCAGGCTCTGATTCGAGCTTTCGACGGAGTCGACGGGACCGTGAAGCTTGTGGGTTTGAAGGAGAGTGGCTTCTTCCACCTCTTGCCTCGAATTGGGTTTTTGAAGGCTTCGGCGGAGGAGGCGTTCTTTATGGAGGTGGAGGAGGTGAGGAAGCTCTGCTGTGTTGTGGTGACGAACGGGAGGCGTGGGTGTAAAGTTTATTGGGGAGACGGCGAGGTGGAAGTTGGGCCTTTTCCGACGCACCAGGTTGATCCGACGGGCGCAGGAGACAGTTTCCTTGGTGGGTTTGTTGCCGGACTTGTTAATGGCTTGACTGTGCCTGATGCTGCATTGCTCGGCAACCTTTTCGGGTCACTGACTGTTGGGCATATTGGATTGCCCAAGTTTGATTCCAAGTTATTGCAGAGAGTTCGTGAAGAGGTGCAGAGGAGAAAAATGCAGTGCGGTAATTGCCGCGAAAGAAAAGATGACAGGTTTAGGTTTGTGAACATAGCAGGACATGAGCAATTTCATGCATCTCTAGGGGCAGCTAAGCAGACAACAAAGTGCCTTGCTCAGGAACCTCAATGGGATCTGCCAAGTTCTCCTCCCAAGTCAATGGAACGGGGTGTCCTCCCTCAATACGCGACACAGCCTAAATTGTTACCGGTCTCTGTCAATGAAGAACCAGTTCAAATCGTTGACACTGCCGGTAAACCATGA

Protein Analysis

385

Amino Acids

41.58

Weight (kDa)

6.1

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 206 - 276 2.4e-18 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AccII CGCG 4 cut(s) 208, 254, 909, 1079
AciI CCGC 9 cut(s) 111, 117, 206, 276, 321, 387, 566, 897, 907
AclWI GGATC 3 cut(s) 348, 698, 1032
AcoI YGGCCR 1 cut(s) 96
AcyI GRCGYC 2 cut(s) 87, 270
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 180, 545, 1009
AgeI ACCGGT 1 cut(s) 1099
AgsI TTSAA 4 cut(s) 79, 511, 556, 1127
AjnI CCWGG 1 cut(s) 696
AloI GAACNNNNNNTCC 6 cut(s) 138, 170, 560, 592, 1047, 1079
AluBI AGCT 6 cut(s) 32, 317, 470, 499, 607, 983
AluI AGCT 6 cut(s) 32, 317, 470, 499, 607, 983
Alw26I GTCTC 6 cut(s) 95, 398, 419, 654, 714, 1108
AlwI GGATC 3 cut(s) 348, 698, 1032
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 6 cut(s) 10, 96, 114, 322, 332, 680
ApeKI GCWGC 3 cut(s) 432, 779, 980
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AsiGI ACCGGT 1 cut(s) 1099
Asp700I GAANNNNTTC 1 cut(s) 1122
AspLEI GCGC 2 cut(s) 256, 716
AspS9I GGNCC 8 cut(s) 11, 40, 114, 202, 323, 333, 489, 680
AsuC2I CCSGG 5 cut(s) 37, 38, 108, 296, 348
AsuHPI GGTGA 4 cut(s) 290, 388, 610, 634
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 3 cut(s) 40, 202, 489
BbsI GAAGAC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 444, 766, 992
BccI CCATC 1 cut(s) 137
BceAI ACGGC 3 cut(s) 100, 302, 679
BcgI CGANNNNNNTGC 4 cut(s) 781, 815, 845, 879
BciT130I CCWGG 1 cut(s) 698
BciVI GTATCC 1 cut(s) 344
BcnI CCSGG 5 cut(s) 37, 38, 108, 296, 348
BcoDI GTCTC 6 cut(s) 95, 398, 419, 654, 714, 1108
BfaI CTAG 1 cut(s) 974
BfuI GTATCC 1 cut(s) 344
BisI GCNGC 7 cut(s) 117, 322, 388, 433, 780, 907, 981
BlpI GCTNAGC 1 cut(s) 984
BlsI GCNGC 7 cut(s) 118, 323, 389, 434, 781, 908, 982
Bme1390I CCNGG 6 cut(s) 37, 38, 108, 296, 348, 698
Bme18I GGWCC 3 cut(s) 40, 202, 489
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 8 cut(s) 11, 40, 114, 202, 323, 333, 489, 680
BmiI GGNNCC 5 cut(s) 41, 115, 204, 490, 1014
BmrFI CCNGG 6 cut(s) 37, 38, 108, 296, 348, 698
BmsI GCATC 2 cut(s) 766, 977
BpiI GAAGAC 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 1008
Bpu1102I GCTNAGC 1 cut(s) 984
BpuMI CCSGG 5 cut(s) 37, 38, 108, 296, 348
BsaHI GRCGYC 2 cut(s) 87, 270
BsaI GGTCTC 1 cut(s) 1108
BsaJI CCNNGG 5 cut(s) 35, 36, 336, 346, 730
BsaWI WCCGGW 1 cut(s) 1099
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 560, 590
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 545, 1009
Bse118I RCCGGY 3 cut(s) 50, 1099, 1142
Bse1I ACTGG 1 cut(s) 1121
Bse3DI GCAATG 1 cut(s) 782
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 5 cut(s) 35, 36, 336, 346, 730
BseLI CCNNNNNNNGG 3 cut(s) 180, 545, 1009
BseMI GCAATG 1 cut(s) 782
BseMII CTCAG 1 cut(s) 1022
BseNI ACTGG 1 cut(s) 1121
BseRI GAGGAG 4 cut(s) 584, 608, 895, 1029
BseXI GCAGC 3 cut(s) 444, 766, 992
BsgI GTGCAG 1 cut(s) 896
Bsh1236I CGCG 4 cut(s) 208, 254, 909, 1079
BshFI GGCC 6 cut(s) 12, 98, 116, 324, 334, 682
BshTI ACCGGT 1 cut(s) 1099
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 9 cut(s) 37, 51, 108, 267, 295, 348, 747, 1100, 1143
BslFI GGGAC 2 cut(s) 188, 502
BslI CCNNNNNNNGG 3 cut(s) 180, 545, 1009
BsmAI GTCTC 6 cut(s) 95, 398, 419, 654, 714, 1108
BsmBI CGTCTC 2 cut(s) 398, 654
BsmFI GGGAC 2 cut(s) 188, 502
BsnI GGCC 6 cut(s) 12, 98, 116, 324, 334, 682
Bso31I GGTCTC 1 cut(s) 1108
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 4 cut(s) 340, 393, 703, 1024
Bsp1720I GCTNAGC 1 cut(s) 984
BspACI CCGC 9 cut(s) 111, 117, 206, 276, 321, 387, 566, 897, 907
BspANI GGCC 6 cut(s) 12, 98, 116, 324, 334, 682
BspCNI CTCAG 1 cut(s) 1021
BspFNI CGCG 4 cut(s) 208, 254, 909, 1079
BspLI GGNNCC 5 cut(s) 41, 115, 204, 490, 1014
BspPI GGATC 3 cut(s) 348, 698, 1032
BspTNI GGTCTC 1 cut(s) 1108
BsrDI GCAATG 1 cut(s) 782
BsrFI RCCGGY 3 cut(s) 50, 1099, 1142
BsrI ACTGG 1 cut(s) 1121
BssAI RCCGGY 3 cut(s) 50, 1099, 1142
BssECI CCNNGG 5 cut(s) 35, 36, 336, 346, 730
BssMI GATC 4 cut(s) 340, 393, 703, 1024
BssNI GRCGYC 2 cut(s) 87, 270
BssT1I CCWWGG 1 cut(s) 730
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 7 cut(s) 400, 409, 439, 493, 725, 769, 814
Bst6I CTCTTC 2 cut(s) 251, 864
BstACI GRCGYC 2 cut(s) 87, 270
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 52, 319
BstDEI CTNAG 2 cut(s) 984, 1008
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstFNI CGCG 4 cut(s) 208, 254, 909, 1079
BstHHI GCGC 2 cut(s) 256, 716
BstKTI GATC 4 cut(s) 343, 396, 706, 1027
BstMAI GTCTC 6 cut(s) 95, 398, 419, 654, 714, 1108
BstMBI GATC 4 cut(s) 340, 393, 703, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 60, 572, 903
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 6 cut(s) 35, 36, 106, 294, 346, 696
BstUI CGCG 4 cut(s) 208, 254, 909, 1079
BstV1I GCAGC 3 cut(s) 444, 766, 992
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 2 cut(s) 340, 1024
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 2 cut(s) 340, 1024
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 6 cut(s) 12, 98, 116, 324, 334, 682
BtsI GCAGTG 2 cut(s) 899, 1137
BtsIMutI CAGTG 4 cut(s) 435, 806, 899, 1137
Cac8I GCNNGC 2 cut(s) 52, 319
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 2 cut(s) 256, 716
Cfr10I RCCGGY 3 cut(s) 50, 1099, 1142
Cfr13I GGNCC 8 cut(s) 11, 40, 114, 202, 323, 333, 489, 680
Cfr9I CCCGGG 1 cut(s) 36
CseI GACGC 3 cut(s) 76, 259, 700
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 1 cut(s) 224
CspAI ACCGGT 1 cut(s) 1099
CviAII CATG 3 cut(s) 953, 965, 1152
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 984, 1008
DpnI GATC 4 cut(s) 342, 395, 705, 1026
DpnII GATC 4 cut(s) 340, 393, 703, 1024
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 251, 864
EarI CTCTTC 2 cut(s) 251, 864
EciI GGCGGA 1 cut(s) 581
Eco130I CCWWGG 1 cut(s) 730
Eco31I GGTCTC 1 cut(s) 1108
Eco47I GGWCC 3 cut(s) 40, 202, 489
Eco88I CYCGRG 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoO109I RGGNCCY 2 cut(s) 40, 333
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 1 cut(s) 730
EcoT22I ATGCAT 1 cut(s) 970
ErhI CCWWGG 1 cut(s) 730
Esp3I CGTCTC 2 cut(s) 398, 654
FaeI CATG 3 cut(s) 956, 968, 1155
FaiI YATR 6 cut(s) 584, 822, 944, 954, 966, 1153
FaqI GGGAC 2 cut(s) 188, 502
FatI CATG 3 cut(s) 952, 964, 1151
FauI CCCGC 2 cut(s) 104, 213
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 7 cut(s) 117, 322, 388, 433, 780, 907, 981
Fsp4HI GCNGC 7 cut(s) 117, 322, 388, 433, 780, 907, 981
FspBI CTAG 1 cut(s) 974
GlaI GCGC 2 cut(s) 255, 715
GluI GCNGC 7 cut(s) 117, 322, 388, 433, 780, 907, 981
HaeIII GGCC 6 cut(s) 12, 98, 116, 324, 334, 682
HapII CCGG 9 cut(s) 37, 51, 108, 267, 295, 348, 747, 1100, 1143
HgaI GACGC 3 cut(s) 76, 259, 700
HhaI GCGC 2 cut(s) 256, 716
Hin1I GRCGYC 2 cut(s) 87, 270
Hin1II CATG 3 cut(s) 956, 968, 1155
Hin6I GCGC 2 cut(s) 254, 714
HinP1I GCGC 2 cut(s) 254, 714
HincII GTYRAC 2 cut(s) 484, 1135
HindII GTYRAC 2 cut(s) 484, 1135
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 6 cut(s) 16, 103, 263, 463, 480, 842
HpaII CCGG 9 cut(s) 37, 51, 108, 267, 295, 348, 747, 1100, 1143
HphI GGTGA 4 cut(s) 290, 388, 610, 634
Hpy166II GTNNAC 5 cut(s) 448, 484, 940, 1135, 1148
Hpy188I TCNGA 6 cut(s) 187, 340, 368, 462, 690, 708
Hpy188III TCNNGA 2 cut(s) 866, 1010
Hpy8I GTNNAC 5 cut(s) 448, 484, 940, 1135, 1148
Hpy99I CGWCG 7 cut(s) 71, 92, 275, 479, 488, 694, 712
HpyAV CCTTC 3 cut(s) 133, 505, 550
HpyCH4III ACNGT 7 cut(s) 400, 409, 439, 493, 725, 769, 814
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 8 cut(s) 234, 304, 432, 782, 856, 877, 892, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 572, 903
HpyF3I CTNAG 2 cut(s) 984, 1008
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 2 cut(s) 87, 270
Hsp92II CATG 3 cut(s) 956, 968, 1155
HspAI GCGC 2 cut(s) 254, 714
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 4 cut(s) 340, 393, 703, 1024
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 3 cut(s) 444, 766, 992
LweI GCATC 2 cut(s) 766, 977
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 1 cut(s) 974
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 6 cut(s) 209, 278, 290, 622, 804, 1095
MalI GATC 4 cut(s) 342, 395, 705, 1026
MboI GATC 4 cut(s) 340, 393, 703, 1024
MboII GAAGA 5 cut(s) 130, 238, 517, 881, 1127
MflI RGATCY 2 cut(s) 340, 1024
MluCI AATT 6 cut(s) 25, 163, 543, 901, 959, 1091
MlyI GAGTC 2 cut(s) 97, 489
MmeI TCCRAC 3 cut(s) 165, 713, 731
Mph1103I ATGCAT 1 cut(s) 970
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 1122
MseI TTAA 1 cut(s) 756
MspI CCGG 9 cut(s) 37, 51, 108, 267, 295, 348, 747, 1100, 1143
MspR9I CCNGG 6 cut(s) 37, 38, 108, 296, 348, 698
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 4 cut(s) 208, 254, 909, 1079
MwoI GCNNNNNNNGC 3 cut(s) 60, 572, 903
NaeI GCCGGC 1 cut(s) 52
NciI CCSGG 5 cut(s) 37, 38, 108, 296, 348
NdeII GATC 4 cut(s) 340, 393, 703, 1024
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 3 cut(s) 956, 968, 1155
NlaIV GGNNCC 5 cut(s) 41, 115, 204, 490, 1014
NmeAIII GCCGAG 2 cut(s) 124, 768
NmuCI GTSAC 5 cut(s) 209, 278, 290, 622, 804
NsiI ATGCAT 1 cut(s) 970
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 279, 480, 489
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 1122
PfeI GAWTC 4 cut(s) 16, 263, 463, 842
PflFI GACNNNGTC 2 cut(s) 86, 479
PinAI ACCGGT 1 cut(s) 1099
PkrI GCNGC 7 cut(s) 118, 323, 389, 434, 781, 908, 982
PleI GAGTC 2 cut(s) 97, 488
PpsI GAGTC 2 cut(s) 97, 488
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 5 cut(s) 41, 115, 204, 490, 1014
PspPI GGNCC 8 cut(s) 11, 40, 114, 202, 323, 333, 489, 680
PspPPI RGGWCCY 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 2 cut(s) 340, 1024
PsyI GACNNNGTC 2 cut(s) 86, 479
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 7 cut(s) 117, 322, 388, 433, 780, 907, 981
Sau3AI GATC 4 cut(s) 340, 393, 703, 1024
Sau96I GGNCC 8 cut(s) 11, 40, 114, 202, 323, 333, 489, 680
SchI GAGTC 2 cut(s) 97, 489
ScrFI CCNGG 6 cut(s) 37, 38, 108, 296, 348, 698
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 2 cut(s) 766, 977
SinI GGWCC 3 cut(s) 40, 202, 489
SmaI CCCGGG 1 cut(s) 38
Sse9I AATT 6 cut(s) 25, 163, 543, 901, 959, 1091
SsiI CCGC 9 cut(s) 111, 117, 206, 276, 321, 387, 566, 897, 907
SspMI CTAG 1 cut(s) 974
StyD4I CCNGG 6 cut(s) 35, 36, 106, 294, 346, 696
StyI CCWWGG 1 cut(s) 730
TaaI ACNGT 7 cut(s) 400, 409, 439, 493, 725, 769, 814
TaiI ACGT 1 cut(s) 72
TaqI TCGA 6 cut(s) 7, 141, 466, 474, 483, 541
TaqII GACCGA 1 cut(s) 190
TasI AATT 6 cut(s) 25, 163, 543, 901, 959, 1091
TauI GCSGC 4 cut(s) 119, 324, 390, 909
TfiI GAWTC 4 cut(s) 16, 263, 463, 842
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 4 cut(s) 442, 813, 899, 1144
TseFI GTSAC 5 cut(s) 209, 278, 290, 622, 804
TseI GCWGC 3 cut(s) 432, 779, 980
Tsp45I GTSAC 5 cut(s) 209, 278, 290, 622, 804
TspDTI ATGAA 3 cut(s) 115, 953, 1128
TspGWI ACGGA 2 cut(s) 142, 492
TspMI CCCGGG 1 cut(s) 36
TspRI CASTG 4 cut(s) 442, 813, 899, 1144
Tth111I GACNNNGTC 2 cut(s) 86, 479
VpaK11BI GGWCC 3 cut(s) 40, 202, 489
XagI CCTNNNNNAGG 1 cut(s) 1007
XmaI CCCGGG 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 1122
XspI CTAG 1 cut(s) 974
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.