Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007219.1

Orthogroup ID

OG0003783

Physical Location & Seq

Genomic Coordinates Reverse (-)

17872 .. 18260

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007219.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgctcggcggggccgcttctttcatctccaacgtgactactctgtcccacgcgcattttgattctggaatcgaaggggaaggccagcaggatcgggttctgaagcaggtggcctgcgacccgatttgcccctcggatctgctcgaatccaggtttgatttcggaatggcaattggggtcggcggcgagattacggtggagaccattgagaactggtggagatttgcggcactgtgtttgtggacattcaagctctatttcgggtttttgatggggttgatggggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019140 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0046165 GO:0046173 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 map00562 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

96

Amino Acids

10.54

Weight (kDa)

4.53

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58730
fragaria_vesca	FvH4_3g38550
malus_domestica	MD03G1070700.v1.1 MD11G1074700.v1.1
prunus_persica	Prupe.6G057500_v2.0.a1
pyrus_communis	pycom03g05690 pycom11g06200
rosa_chinensis	RchiOBHm_Chr5g0069451 RchiOBHm_Chr6g0276161 RchiOBHm_Chr6g0303391 RchiOBHm_Chr7g0201761
rosa_laevigata	RLG00000036054
rosa_multiflora	Rmu_sc0002658.1_g000033 Rmu_sc0004181.1_g000022 Rmu_sc0004359.1_g000001 Rmu_sc0006422.1_g000024 Rmu_sc0007219.1_g000001 Rmu_sc0010739.1_g000002 Rmu_sc0011424.1_g000019 Rmu_sc0019422.1_g000003 Rmu_sc0022597.1_g000008 Rmu_ssc0000201.1_g000003
rosa_roxburghii	Rroxscaffold_1G00011500 Rroxscaffold_2G00112290
rosa_rugosa	Rorug05G0397700
rosa_samantha	Rh5AG455000 Rh5BG474000 Rh5CG496400 Rh5DG485800 Rh6DG206800 Rh7AG156400 Rh7DG198700
rosa_wichuraiana	Rw2G037450 Rw5G042440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
AasI	GACNNNNNNGTC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	97
AccII	CGCG	1 cut(s)	53
AciI	CCGC	4 cut(s)	9, 15, 183, 227
AclWI	GGATC	2 cut(s)	99, 144
AcuI	CTGAAG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	99, 144
AoxI	GGCC	3 cut(s)	12, 82, 111
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	12
BccI	CCATC	2 cut(s)	265, 274
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	3 cut(s)	15, 184, 228
BlsI	GCNGC	3 cut(s)	16, 185, 229
Bme1390I	CCNGG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	14, 84, 113
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	14, 84, 113
Bso31I	GGTCTC	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	91, 136
BspACI	CCGC	4 cut(s)	9, 15, 183, 227
BspANI	GGCC	3 cut(s)	14, 84, 113
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	99, 144
BspTNI	GGTCTC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	91, 136
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	196, 234
BstC8I	GCNNGC	2 cut(s)	86, 115
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	94, 139
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	91, 136
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	14, 84, 113
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	86, 115
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	12
CviJI	RGCY	5 cut(s)	14, 84, 113, 253, 286
CviKI_1	RGCY	5 cut(s)	14, 84, 113, 253, 286
DpnI	GATC	2 cut(s)	93, 138
DpnII	GATC	2 cut(s)	91, 136
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	149
FaqI	GGGAC	1 cut(s)	31
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	3 cut(s)	15, 184, 228
Fsp4HI	GCNGC	3 cut(s)	15, 184, 228
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	3 cut(s)	15, 184, 228
HaeIII	GGCC	3 cut(s)	14, 84, 113
HhaI	GCGC	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	3 cut(s)	62, 69, 146
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	102, 136, 164
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	68, 74
HpyCH4III	ACNGT	2 cut(s)	196, 234
HpyCH4IV	ACGT	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	33
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	91, 136
LpnPI	CCDG	8 cut(s)	51, 74, 92, 98, 127, 136, 163, 199
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	93, 138
MboI	GATC	2 cut(s)	91, 136
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	53
NdeII	GATC	2 cut(s)	91, 136
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	62, 69, 146
PkrI	GCNGC	3 cut(s)	16, 185, 229
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	136
SatI	GCNGC	3 cut(s)	15, 184, 228
Sau3AI	GATC	2 cut(s)	91, 136
Sau96I	GGNCC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	4 cut(s)	36, 111, 155, 255
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	4 cut(s)	9, 15, 183, 227
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	196, 234
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	72, 144
TasI	AATT	1 cut(s)	171
TauI	GCSGC	3 cut(s)	17, 186, 230
TfiI	GAWTC	3 cut(s)	62, 69, 146
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.