Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Forward (+)

24864290 .. 24866019

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCTTCAAGGGAGAGGATAGGTTCAAATCATCATAGCCGAGTTAGCCAAGGTATGTCAACTAGTGGATCATCATCGTCGAGGCACCACGATACCATTTCTTCGACTTCGGATCCTCGTCATCTTCGAGACCACCAGATTTCACTTTCTGATATTCTAGAAAACAAGATTGCAGTTCAAGCTGCTGAGATAGACCGGCTCTCTAATGACAACCGAAAACTAGCTTCAAGCTACGTAGCTCTCAAGGAAGACTTAACCGTGGCTGACCGCGAAGTCCAGGGGCTAAGAGCTCACATCAGAAAGACGGAAACAGACCACGAGATTCAGATCCGATCGACTCTTGAGAAAATAGCGAAAATGGAGGGTATGGTCAAGAATCGAGAGAATATAAGGAGGGAAGTGCAATCAGCTCACATTGAGGCTCATAGATTGGCGAGAGAACGTGAGGAGCTTGCTTCAAAGGTGAAGTTGGGAATGAAAGATTTGAAGAAGGTTTGTCTTGAGGCAGAGAGTTTAGAGGCGTCGAGTCAAGAGCTTGAGCGGTTGAAAGAGGAGCATCAGAGATTACGGAAAGAGTTCGAGGAAGAGAAGAGTGGGAACGTAGAGAAACTTGCGCAATTGAAAGGGATGGAGAGGAAGATAATTGGAGCGGTTAAAGCGATTGAGAAGCTGCGAAGTGAGATCTCAACCGCAAGGAACAAAGCTGTCGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.09

Weight (kDa)

9.09

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc16I	TGCGCA	1 cut(s)	615
AccB1I	GGYRCC	1 cut(s)	84
AccBSI	CCGCTC	2 cut(s)	541, 650
AccII	CGCG	1 cut(s)	270
AciI	CCGC	4 cut(s)	268, 541, 650, 690
AclWI	GGATC	4 cut(s)	76, 107, 120, 322
AcyI	GRCGYC	1 cut(s)	521
AgsI	TTSAA	8 cut(s)	9, 27, 179, 228, 459, 487, 547, 622
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	276
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	4 cut(s)	76, 107, 120, 322
ApeKI	GCWGC	2 cut(s)	182, 670
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	475
BamHI	GGATCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	169, 657
BccI	CCATC	1 cut(s)	622
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	3 cut(s)	63, 158, 221
BglII	AGATCT	1 cut(s)	681
BisI	GCNGC	2 cut(s)	183, 671
BlsI	GCNGC	2 cut(s)	184, 672
Bme1390I	CCNGG	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	86, 114
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	255
BpuEI	CTTGAG	4 cut(s)	227, 362, 521, 557
BsaAI	YACGTR	1 cut(s)	235
BsaBI	GATNNNNATC	2 cut(s)	73, 326
BsaHI	GRCGYC	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	49, 258, 277
Bse118I	RCCGGY	1 cut(s)	195
Bse8I	GATNNNNATC	2 cut(s)	73, 326
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	49, 258, 277
BseGI	GGATG	1 cut(s)	633
BseJI	GATNNNNATC	2 cut(s)	73, 326
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	461, 566
BseXI	GCAGC	2 cut(s)	169, 657
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	68, 112, 327, 332, 681
BspACI	CCGC	4 cut(s)	268, 541, 650, 690
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	86, 114
BspPI	GGATC	4 cut(s)	76, 107, 120, 322
BspT107I	GGYRCC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	123
BsrBI	CCGCTC	2 cut(s)	541, 650
BsrFI	RCCGGY	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	49, 258, 277
BssMI	GATC	5 cut(s)	68, 112, 327, 332, 681
BssNI	GRCGYC	1 cut(s)	521
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	579, 584
BstACI	GRCGYC	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	2 cut(s)	186, 284
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	633
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	5 cut(s)	71, 115, 330, 335, 684
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	5 cut(s)	68, 112, 327, 332, 681
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 179, 656
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSNI	TACGTA	1 cut(s)	235
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	169, 657
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	3 cut(s)	112, 327, 681
BstYI	RGATCY	3 cut(s)	112, 327, 681
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	633
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	195
CseI	GACGC	1 cut(s)	510
DdeI	CTNAG	2 cut(s)	186, 284
DpnI	GATC	5 cut(s)	70, 114, 329, 334, 683
DpnII	GATC	5 cut(s)	68, 112, 327, 332, 681
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	579, 584
EarI	CTCTTC	2 cut(s)	579, 584
Ecl136II	GAGCTC	1 cut(s)	290
Eco105I	TACGTA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	49
FaiI	YATR	5 cut(s)	36, 56, 368, 389, 426
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
Fnu4HI	GCNGC	2 cut(s)	183, 671
FokI	GGATG	1 cut(s)	640
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	2 cut(s)	183, 671
FspBI	CTAG	3 cut(s)	63, 158, 221
FspI	TGCGCA	1 cut(s)	615
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	2 cut(s)	183, 671
HapII	CCGG	1 cut(s)	196
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	616
Hin1I	GRCGYC	1 cut(s)	521
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	4 cut(s)	322, 337, 376, 526
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	6 cut(s)	112, 151, 299, 327, 332, 561
Hpy188III	TCNNGA	8 cut(s)	128, 158, 341, 373, 380, 500, 530, 709
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	2 cut(s)	82, 526
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	3 cut(s)	234, 442, 600
HpyCH4V	TGCA	2 cut(s)	173, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 179, 656
HpyF3I	CTNAG	2 cut(s)	186, 284
HpySE526I	ACGT	3 cut(s)	234, 442, 600
Hsp92I	GRCGYC	1 cut(s)	521
HspAI	GCGC	1 cut(s)	614
Kzo9I	GATC	5 cut(s)	68, 112, 327, 332, 681
LmnI	GCTCC	3 cut(s)	448, 553, 647
LpnPI	CCDG	4 cut(s)	149, 209, 263, 290
Lsp1109I	GCAGC	2 cut(s)	169, 657
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	3 cut(s)	63, 158, 221
MaeII	ACGT	3 cut(s)	234, 442, 600
MalI	GATC	5 cut(s)	70, 114, 329, 334, 683
MbiI	CCGCTC	2 cut(s)	541, 650
MboI	GATC	5 cut(s)	68, 112, 327, 332, 681
MboII	GAAGA	7 cut(s)	93, 116, 260, 499, 596, 601, 649
MfeI	CAATTG	1 cut(s)	617
MflI	RGATCY	3 cut(s)	112, 327, 681
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	3 cut(s)	617, 642, 712
MlyI	GAGTC	2 cut(s)	331, 535
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	2 cut(s)	254, 654
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	45, 179, 656
NdeII	GATC	5 cut(s)	68, 112, 327, 332, 681
NlaIV	GGNNCC	2 cut(s)	86, 114
NmeAIII	GCCGAG	1 cut(s)	65
NsbI	TGCGCA	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	322, 376
PkrI	GCNGC	2 cut(s)	184, 672
Ple19I	CGATCG	1 cut(s)	335
PleI	GAGTC	2 cut(s)	331, 534
PpsI	GAGTC	2 cut(s)	331, 534
Ppu21I	YACGTR	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	86, 114
PsuI	RGATCY	3 cut(s)	112, 327, 681
PvuI	CGATCG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	254, 654
SatI	GCNGC	2 cut(s)	183, 671
Sau3AI	GATC	5 cut(s)	68, 112, 327, 332, 681
SchI	GAGTC	2 cut(s)	331, 535
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	565
SmlI	CTYRAG	4 cut(s)	242, 341, 500, 536
SmoI	CTYRAG	4 cut(s)	242, 341, 500, 536
SnaBI	TACGTA	1 cut(s)	235
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	3 cut(s)	617, 642, 712
SsiI	CCGC	4 cut(s)	268, 541, 650, 690
SspMI	CTAG	3 cut(s)	63, 158, 221
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	3 cut(s)	237, 445, 603
TaqI	TCGA	8 cut(s)	80, 104, 127, 335, 379, 524, 579, 708
TasI	AATT	3 cut(s)	617, 642, 712
TfiI	GAWTC	2 cut(s)	322, 376
Tru1I	TTAA	2 cut(s)	254, 654
Tru9I	TTAA	2 cut(s)	254, 654
TseI	GCWGC	2 cut(s)	182, 670
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	2 cut(s)	320, 583
XbaI	TCTAGA	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	3 cut(s)	63, 158, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.