Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Reverse (-)

18156857 .. 18158589

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G181400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTGGGAGACGAAAAATTCCATCGTCTTTTGAGGGACGTCCCATTCAATCTCCAGGTATGATGCGGCATGGTCCTTTGCCTGGGTTAGGGCTGCCTCCTGGTCACCGACCATTTGAGGCACTACCACGTCCTGAACTACTGGAAAATAAAATTGCATATCAAGCAGCAGAGACAAAACAACTGACAGGAGACAATCATAGACTGGCAGATATTTTAGCTGCTGAAGAGGAAGTACAGAGGTTCAAAGCACATATGAGAAGCATCCAGACTGAGAGTGACATTCAGCCGGGCGGGTATACTATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

8.18

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	2 cut(s)	67, 294
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	83, 89
AgsI	TTSAA	2 cut(s)	50, 247
AjiI	CACGTC	1 cut(s)	131
AjnI	CCWGG	3 cut(s)	55, 82, 100
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	3 cut(s)	4, 167, 186
ApeKI	GCWGC	3 cut(s)	94, 167, 221
ApoI	RAATTY	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	219, 251
BbvI	GCAGC	3 cut(s)	81, 179, 208
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	3 cut(s)	57, 84, 102
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	3 cut(s)	4, 167, 186
BisI	GCNGC	4 cut(s)	68, 95, 168, 222
BlsI	GCNGC	4 cut(s)	69, 96, 169, 223
Bme1390I	CCNGG	4 cut(s)	57, 84, 102, 291
Bme18I	GGWCC	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	4 cut(s)	57, 84, 102, 291
BmsI	GCATC	2 cut(s)	54, 273
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 89
Bse1I	ACTGG	2 cut(s)	147, 210
BseBI	CCWGG	3 cut(s)	57, 84, 102
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	83, 89
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	147, 210
BseXI	GCAGC	3 cut(s)	81, 179, 208
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	2 cut(s)	27, 51
BslI	CCNNNNNNNGG	2 cut(s)	83, 89
BsmAI	GTCTC	3 cut(s)	4, 167, 186
BsmBI	CGTCTC	1 cut(s)	4
BsmFI	GGGAC	2 cut(s)	27, 51
BspACI	CCGC	2 cut(s)	67, 294
BspCNI	CTCAG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	147, 210
BssECI	CCNNGG	1 cut(s)	83
BssNAI	GTATAC	1 cut(s)	300
BssNI	GRCGYC	1 cut(s)	40
Bst1107I	GTATAC	1 cut(s)	300
Bst2UI	CCWGG	3 cut(s)	57, 84, 102
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	264
BstMAI	GTCTC	3 cut(s)	4, 167, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	3 cut(s)	57, 84, 102
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	4 cut(s)	55, 82, 100, 289
BstV1I	GCAGC	3 cut(s)	81, 179, 208
BstZ17I	GTATAC	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	3 cut(s)	94, 221, 289
CviKI_1	RGCY	3 cut(s)	94, 221, 289
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	3 cut(s)	55, 82, 100
Esp3I	CGTCTC	1 cut(s)	4
FaeI	CATG	1 cut(s)	74
FaiI	YATR	7 cut(s)	62, 72, 160, 201, 255, 257, 300
FaqI	GGGAC	2 cut(s)	27, 51
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	4 cut(s)	68, 95, 168, 222
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	68, 95, 168, 222
GluI	GCNGC	4 cut(s)	68, 95, 168, 222
GsuI	CTGGAG	1 cut(s)	39
HapII	CCGG	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	74
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188III	TCNNGA	2 cut(s)	134, 268
Hpy8I	GTNNAC	1 cut(s)	300
HpyCH4IV	ACGT	2 cut(s)	40, 130
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	40, 130
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	81, 179, 208
LweI	GCATC	2 cut(s)	54, 273
MaeII	ACGT	2 cut(s)	40, 130
MaeIII	GTNAC	2 cut(s)	104, 278
MboII	GAAGA	1 cut(s)	239
MluCI	AATT	2 cut(s)	18, 153
MnlI	CCTC	5 cut(s)	28, 108, 112, 223, 234
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	4 cut(s)	57, 84, 102, 291
MvaI	CCWGG	3 cut(s)	57, 84, 102
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	255
NlaIII	CATG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	104, 278
PkrI	GCNGC	4 cut(s)	69, 96, 169, 223
Psp6I	CCWGG	3 cut(s)	55, 82, 100
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	3 cut(s)	55, 82, 100
PspPI	GGNCC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SatI	GCNGC	4 cut(s)	68, 95, 168, 222
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	57, 84, 102, 291
SetI	ASST	5 cut(s)	43, 61, 133, 223, 245
SfaNI	GCATC	2 cut(s)	54, 273
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	2 cut(s)	18, 153
SsiI	CCGC	2 cut(s)	67, 294
StyD4I	CCNGG	4 cut(s)	55, 82, 100, 289
TaiI	ACGT	2 cut(s)	43, 133
TasI	AATT	2 cut(s)	18, 153
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	104, 278
TseI	GCWGC	3 cut(s)	94, 167, 221
Tsp45I	GTSAC	2 cut(s)	104, 278
VpaK11BI	GGWCC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	299
ZraI	GACGTC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.