Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Reverse (-)

7882385 .. 7885811

Gene Structure 3427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G098700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCTGGGAGACGAAAAATTCCATCGTCTTTTGAGCGACGTCCCATTCAATCTCCAGGTATGATGCGGCATGGTCCATTGCCTGGGTTAGGGCCACCTCCTGGTCACCGACCATTTGAGGCACTACCACGTCCTGAGCTTTTGGAAAATAAAATTGCATATCAAGCAGCAGAGATAAAACAACTGACAGGAGACAATCATAGACTGGCGGCTACTCATGTTGATTTGAGGCAGGATCTTTTAGCTGCTGAGGAGGAACTACAGAGACTCAAGGCACACATGAGAAGCATCCAGACTGAGAGTGACATTCAGATGCGGGGTTTGCTTGATAAGATTGCAAAAAGGGAAGCAGACATCGAAGCTGGCGAGGGTGTGAAAAAGGAACTGCAAAAGGCTCACATGGAGGCACAGACCTTGGTCGCAGCGCGACAAGAGCTGACCATTCAAATTCGGAAGGCCACAGAGGAGTTGCAGAAAGCTCGTCTTGATGTTGAGAAACTACCGGGTTTGCATGCTGAACTTGACAGTCTGAGGCGAGAACACCATAGGCTGCGTTCAACTTTTGAATACGAAAAGGGTTTAAACATAGAGGAAGTGGAGCAAATGAAAGCAATGGAGAAGAATCTAATTGGGATGGCAAGAGAAGTAGAAAGGTTGCGTGACGAGGTCTCAAATGCAGAGAAGAGAGCCCATGCACCAAACGCACATGCTGGCGGTTACACAAATCCAGATTCTTATTACCCAGTTAACATGCAAGGTGCTGGTGTGTATTTTGATGGTTATGGAAGGCCCTATGTTTCAACCGGTGTTAGACCACCAGGAGAGGGAACAATACCATATGCCAGCAGCAGTGGCATAGCTGCTGGTGCAGTTGTCCCAACTGCTGCTGGTGGTGCTATTTGGGGAGTAGCATATGATCCCTCACTGGACACTGCTGCTGCGGGCGTAGCTATCTCTAATGCTGGGCTTGGAGCTGCTCCAAGAGGCTATGATTCTACGCTTTCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

36.73

Weight (kDa)

6.86

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	43
AccB7I	CCANNNNNTGG	2 cut(s)	83, 101
AccII	CGCG	1 cut(s)	427
AciI	CCGC	5 cut(s)	67, 209, 316, 714, 941
AclWI	GGATC	2 cut(s)	243, 911
AcsI	RAATTY	2 cut(s)	18, 447
AcyI	GRCGYC	1 cut(s)	40
AfiI	CCNNNNNNNGG	4 cut(s)	83, 89, 101, 824
AgeI	ACCGGT	1 cut(s)	803
AgsI	TTSAA	5 cut(s)	50, 446, 558, 566, 801
AjiI	CACGTC	1 cut(s)	131
AjnI	CCWGG	4 cut(s)	55, 82, 100, 817
AluBI	AGCT	8 cut(s)	139, 245, 362, 436, 479, 860, 950, 974
AluI	AGCT	8 cut(s)	139, 245, 362, 436, 479, 860, 950, 974
Alw26I	GTCTC	4 cut(s)	4, 186, 259, 673
AlwI	GGATC	2 cut(s)	243, 911
AoxI	GGCC	3 cut(s)	92, 456, 788
ApoI	RAATTY	2 cut(s)	18, 447
AsiGI	ACCGGT	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	74, 92, 789
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	691
BbvCI	CCTCAGC	1 cut(s)	249
BccI	CCATC	3 cut(s)	31, 628, 770
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	4 cut(s)	57, 84, 102, 819
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	4, 186, 259, 673
BfmI	CTRYAG	1 cut(s)	260
Bme1390I	CCNGG	5 cut(s)	57, 84, 102, 504, 819
Bme18I	GGWCC	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	74, 92, 789
BmrFI	CCNGG	5 cut(s)	57, 84, 102, 504, 819
BmrI	ACTGGG	1 cut(s)	737
BmsI	GCATC	3 cut(s)	54, 297, 303
BmuI	ACTGGG	1 cut(s)	737
BoxI	GACNNNNGTC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	135, 249
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	83, 414
BsaWI	WCCGGW	1 cut(s)	803
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 89, 101, 824
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	3 cut(s)	210, 743, 930
Bse3DI	GCAATG	2 cut(s)	77, 618
BseBI	CCWGG	4 cut(s)	57, 84, 102, 819
BseDI	CCNNGG	2 cut(s)	83, 414
BseGI	GGATG	2 cut(s)	288, 639
BseLI	CCNNNNNNNGG	4 cut(s)	83, 89, 101, 824
BseMI	GCAATG	2 cut(s)	77, 618
BseMII	CTCAG	4 cut(s)	126, 240, 288, 521
BseNI	ACTGG	3 cut(s)	210, 743, 930
BseRI	GAGGAG	2 cut(s)	266, 479
BseYI	CCCAGC	1 cut(s)	962
BsgI	GTGCAG	1 cut(s)	888
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	3 cut(s)	94, 458, 790
BshTI	ACCGGT	1 cut(s)	803
BsiSI	CCGG	2 cut(s)	503, 804
BslFI	GGGAC	2 cut(s)	27, 860
BslI	CCNNNNNNNGG	4 cut(s)	83, 89, 101, 824
BsmAI	GTCTC	4 cut(s)	4, 186, 259, 673
BsmBI	CGTCTC	1 cut(s)	4
BsmFI	GGGAC	2 cut(s)	27, 860
BsnI	GGCC	3 cut(s)	94, 458, 790
Bso31I	GGTCTC	1 cut(s)	673
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	2 cut(s)	235, 916
BspACI	CCGC	5 cut(s)	67, 209, 316, 714, 941
BspANI	GGCC	3 cut(s)	94, 458, 790
BspCNI	CTCAG	4 cut(s)	127, 241, 289, 522
BspFNI	CGCG	1 cut(s)	427
BspPI	GGATC	2 cut(s)	243, 911
BspTNI	GGTCTC	1 cut(s)	673
BsrDI	GCAATG	2 cut(s)	77, 618
BsrFI	RCCGGY	1 cut(s)	803
BsrI	ACTGG	3 cut(s)	210, 743, 930
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	83, 414
BssMI	GATC	2 cut(s)	235, 916
BssNI	GRCGYC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	4 cut(s)	57, 84, 102, 819
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	40
BstC8I	GCNNGC	5 cut(s)	364, 513, 712, 844, 943
BstDEI	CTNAG	4 cut(s)	135, 249, 297, 530
BstEII	GGTNACC	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	288, 639
BstFNI	CGCG	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	238, 919
BstMAI	GTCTC	4 cut(s)	4, 186, 259, 673
BstMBI	GATC	2 cut(s)	235, 916
BstMWI	GCNNNNNNNGC	8 cut(s)	164, 322, 433, 701, 852, 866, 893, 947
BstNI	CCWGG	4 cut(s)	57, 84, 102, 819
BstNSI	RCATGY	3 cut(s)	515, 710, 754
BstPAI	GACNNNNGTC	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	5 cut(s)	55, 82, 100, 502, 817
BstSFI	CTRYAG	1 cut(s)	260
BstUI	CGCG	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	94, 458, 790
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	288, 639
BtsI	GCAGTG	2 cut(s)	856, 930
BtsIMutI	CAGTG	3 cut(s)	856, 923, 930
Cac8I	GCNNGC	5 cut(s)	364, 513, 712, 844, 943
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	3 cut(s)	74, 92, 789
CspAI	ACCGGT	1 cut(s)	803
CviAII	CATG	8 cut(s)	71, 218, 280, 400, 512, 692, 707, 751
DdeI	CTNAG	4 cut(s)	135, 249, 297, 530
DpnI	GATC	2 cut(s)	237, 918
DpnII	GATC	2 cut(s)	235, 916
DraI	TTTAAA	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	789
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	4 cut(s)	55, 82, 100, 817
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	4
FaeI	CATG	8 cut(s)	74, 221, 283, 403, 515, 695, 710, 754
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	2 cut(s)	27, 860
FatI	CATG	8 cut(s)	70, 217, 279, 399, 511, 691, 706, 750
FauI	CCCGC	2 cut(s)	309, 934
FauNDI	CATATG	2 cut(s)	838, 913
FokI	GGATG	2 cut(s)	275, 646
FriOI	GRGCYC	1 cut(s)	691
GlaI	GCGC	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	966
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	94, 458, 790
HapII	CCGG	2 cut(s)	503, 804
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	8 cut(s)	74, 221, 283, 403, 515, 695, 710, 754
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	4 cut(s)	267, 622, 731, 992
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	2 cut(s)	503, 804
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	3 cut(s)	312, 453, 531
Hpy188III	TCNNGA	4 cut(s)	134, 292, 485, 728
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	448, 780
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	2 cut(s)	40, 130
HpyCH4V	TGCA	9 cut(s)	158, 338, 388, 472, 511, 677, 695, 754, 869
HpyF10VI	GCNNNNNNNGC	8 cut(s)	164, 322, 433, 701, 852, 866, 893, 947
HpyF3I	CTNAG	4 cut(s)	135, 249, 297, 530
HpySE526I	ACGT	2 cut(s)	40, 130
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	8 cut(s)	74, 221, 283, 403, 515, 695, 710, 754
HspAI	GCGC	1 cut(s)	425
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	2 cut(s)	235, 916
LmnI	GCTCC	3 cut(s)	598, 971, 982
LweI	GCATC	3 cut(s)	54, 297, 303
MaeII	ACGT	2 cut(s)	40, 130
MaeIII	GTNAC	4 cut(s)	104, 302, 659, 716
MalI	GATC	2 cut(s)	237, 918
MboI	GATC	2 cut(s)	235, 916
MboII	GAAGA	2 cut(s)	631, 694
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	4 cut(s)	18, 153, 447, 627
MlyI	GAGTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	581, 747
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	2 cut(s)	503, 804
MspR9I	CCNGG	5 cut(s)	57, 84, 102, 504, 819
MssI	GTTTAAAC	1 cut(s)	582
MvaI	CCWGG	4 cut(s)	57, 84, 102, 819
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	8 cut(s)	164, 322, 433, 701, 852, 866, 893, 947
NciI	CCSGG	1 cut(s)	504
NdeI	CATATG	2 cut(s)	838, 913
NdeII	GATC	2 cut(s)	235, 916
NlaIII	CATG	8 cut(s)	74, 221, 283, 403, 515, 695, 710, 754
NmuCI	GTSAC	3 cut(s)	104, 302, 659
NspI	RCATGY	3 cut(s)	515, 710, 754
PaeI	GCATGC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	622, 731, 992
PflFI	GACNNNGTC	1 cut(s)	665
PflMI	CCANNNNNTGG	2 cut(s)	83, 101
PinAI	ACCGGT	1 cut(s)	803
PleI	GAGTC	1 cut(s)	261
PmeI	GTTTAAAC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	261
PshAI	GACNNNNGTC	1 cut(s)	416
Psp6I	CCWGG	4 cut(s)	55, 82, 100, 817
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	962
PspGI	CCWGG	4 cut(s)	55, 82, 100, 817
PspPI	GGNCC	3 cut(s)	74, 92, 789
PsuI	RGATCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	581, 747
Sau3AI	GATC	2 cut(s)	235, 916
Sau96I	GGNCC	3 cut(s)	74, 92, 789
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	5 cut(s)	57, 84, 102, 504, 819
SduI	GDGCHC	1 cut(s)	691
SfaNI	GCATC	3 cut(s)	54, 297, 303
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	4 cut(s)	18, 153, 447, 627
SsiI	CCGC	5 cut(s)	67, 209, 316, 714, 941
StyD4I	CCNGG	5 cut(s)	55, 82, 100, 502, 817
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	2 cut(s)	43, 133
TaqI	TCGA	1 cut(s)	357
TasI	AATT	4 cut(s)	18, 153, 447, 627
TauI	GCSGC	2 cut(s)	70, 212
TfiI	GAWTC	3 cut(s)	622, 731, 992
Tru1I	TTAA	2 cut(s)	581, 747
Tru9I	TTAA	2 cut(s)	581, 747
TscAI	CASTG	3 cut(s)	856, 930, 937
TseFI	GTSAC	3 cut(s)	104, 302, 659
Tsp45I	GTSAC	3 cut(s)	104, 302, 659
TspDTI	ATGAA	1 cut(s)	620
TspRI	CASTG	3 cut(s)	856, 930, 937
Tth111I	GACNNNGTC	1 cut(s)	665
Van91I	CCANNNNNTGG	2 cut(s)	83, 101
VpaK11BI	GGWCC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	18, 447
XceI	RCATGY	3 cut(s)	515, 710, 754
ZraI	GACGTC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.