Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Reverse (-)

8083169 .. 8085209

Gene Structure 2041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTCCAACAGTCTATTATGCTTGCAAAGCGGCCACACATTATTGTACTTATGCTGTTATATTCCCCTGAAGGTTGCTACACCTGCACACCTTATGGATCATGTATCCAACCCAAAAAGATTTTCTCTTCGCACGTTGAATTATTTGGAAGAGTGGTTGAGTTGCTAGAAACTTTAGAAGCCATGGCCCAAGACAACCAGCCAATTCCACTGCGAGCCATGATTTTGAGCAGAAAGTATCGAACACTGGTGAGCTCATGGATTGAACTTTTGCAAGAGGAAGCTGAACTTGGACATGATATTGATTACATGGTCAGGTACATTGTAGAGGGAGGGCTTACTGGTGAATGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTCCACTAGATCCTGATGCTGATGGTTTATATATTCTAACCCTATATTGCAAAGGGAGGGCTTACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

17.06

Weight (kDa)

6.81

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	106, 383
AcoI	YGGCCR	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	48, 320
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	140, 266
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 273, 305
AluBI	AGCT	2 cut(s)	255, 284
AluI	AGCT	2 cut(s)	255, 284
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	106, 383
AoxI	GGCC	2 cut(s)	32, 186
AspS9I	GGNCC	2 cut(s)	4, 187
AsuHPI	GGTGA	2 cut(s)	262, 356
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BccI	CCATC	2 cut(s)	351, 395
BciVI	GTATCC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	167, 386
BfuAI	ACCTGC	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 187
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	252, 346
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	252, 346
BsgI	GTGCAG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	34, 188
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	34, 188
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	98, 388
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	34, 188
BspLI	GGNNCC	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	106, 383
BspT107I	GGYRCC	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	252, 346
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	98, 388
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	12, 446
Bst6I	CTCTTC	3 cut(s)	133, 145, 364
BstC8I	GCNNGC	3 cut(s)	24, 216, 353
BstDSI	CCRYGG	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstKTI	GATC	2 cut(s)	101, 391
BstMBI	GATC	2 cut(s)	98, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 84, 361
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	34, 188
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 245
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	24, 216, 353
Cfr13I	GGNCC	2 cut(s)	4, 187
Csp6I	GTAC	2 cut(s)	47, 319
CviAII	CATG	6 cut(s)	102, 184, 220, 258, 296, 310
CviJI	RGCY	9 cut(s)	34, 182, 188, 202, 218, 255, 284, 337, 440
CviKI_1	RGCY	9 cut(s)	34, 182, 188, 202, 218, 255, 284, 337, 440
CviQI	GTAC	2 cut(s)	47, 319
DpnI	GATC	2 cut(s)	100, 390
DpnII	GATC	2 cut(s)	98, 388
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	3 cut(s)	133, 145, 364
EarI	CTCTTC	3 cut(s)	133, 145, 364
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	6 cut(s)	105, 187, 223, 261, 299, 313
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	6 cut(s)	101, 183, 219, 257, 295, 309
Fnu4HI	GCNGC	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	32
FspBI	CTAG	2 cut(s)	167, 386
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	34, 188
Hin1II	CATG	6 cut(s)	105, 187, 223, 261, 299, 313
HphI	GGTGA	2 cut(s)	262, 356
Hpy188III	TCNNGA	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	2 cut(s)	12, 446
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	26, 87, 274, 351, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 84, 361
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	105, 187, 223, 261, 299, 313
Kzo9I	GATC	2 cut(s)	98, 388
LpnPI	CCDG	7 cut(s)	81, 97, 212, 233, 301, 327, 405
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	167, 386
MaeII	ACGT	1 cut(s)	135
MalI	GATC	2 cut(s)	100, 390
MboI	GATC	2 cut(s)	98, 388
MboII	GAAGA	3 cut(s)	120, 162, 381
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	140, 204
MmeI	TCCRAC	2 cut(s)	31, 133
MnlI	CCTC	6 cut(s)	271, 322, 326, 365, 375, 429
MseI	TTAA	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	28, 84, 361
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	98, 388
NlaIII	CATG	6 cut(s)	105, 187, 223, 261, 299, 313
NlaIV	GGNNCC	1 cut(s)	363
PaqCI	CACCTGC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	4, 187
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	2 cut(s)	48, 320
RsaNI	GTAC	2 cut(s)	47, 319
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	98, 388
Sau96I	GGNCC	2 cut(s)	4, 187
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	7 cut(s)	76, 86, 94, 138, 257, 286, 320
SfaNI	GCATC	1 cut(s)	385
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	140, 204
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	167, 386
SstI	GAGCTC	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	12, 446
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	241, 367
TasI	AATT	2 cut(s)	140, 204
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	2 cut(s)	216, 252
TspRI	CASTG	2 cut(s)	216, 252
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	369
XspI	CTAG	2 cut(s)	167, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.