Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001744.1

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Reverse (-)

108177 .. 109691

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001744.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggctgggcgacgacatattttaccatcctttgacagacgccctatacagtctccagggatgatgcggcacgggccattgcctgggttaggtcatgctcctggctaccgagttttggagccagtaccccgtgctgaactactggaaaacaaaattgcatatcaagcagcagagataaaacaacttgcaggagacaatcacagactggcagctactgaggtggatttgaggcgggagcttgtagctgcagaggaggaagttcaaacagtcaaggcgcacatgagaagcatccagactgagagcgacatccagatccgagcgttgcttgataagattgtaaaaaaggaacaggaaattgcagccggtgagggtgtgaagaaggaattgcaaaaggctcacatggaagcacacagcttggtggaagcacggaaagagctaagaattcaaattcgacaggccactgatgagttgcagaaagcttgtattgaggttaagaaactgccagatctgcatggtgaacttgatagtttgagacaagaacaccagaggctgcgtgctacttttgaatatgaaaaaggtagaaacatagaacaagttgagcaaatgaaagcaatggagaagaatctaatgggcatggcaggagaagtagaaaggttgcgtgctgaagtcttgaatgcagagaagagagcacaagcaccaaatccacgtaatggcggttacatgaatccagattcttattacactgctaccatgccaggtgctagtgcgtattttgatggttatggaaggccttatgtttcaatgggtaataggccactgggagagggaataattcaatttgccagcagcagcagcaagcagcatgctgctgcaggtattccaactgctggggatggtgctatctggggagcagcatataatcccttgcttggcactgcttctggtggtgctactgtccctaccactgggagcagtgctgtttggggaggagcatatgattcagcacttgctcgtcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

37.17

Weight (kDa)

7.85

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	863
AccB7I	CCANNNNNTGG	3 cut(s)	83, 710, 887
AciI	CCGC	3 cut(s)	67, 232, 714
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	2 cut(s)	441, 447
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	7 cut(s)	83, 89, 115, 710, 887, 929, 965
AgsI	TTSAA	6 cut(s)	263, 446, 566, 673, 801, 836
AjnI	CCWGG	4 cut(s)	55, 82, 100, 754
AluBI	AGCT	6 cut(s)	212, 238, 245, 414, 436, 479
AluI	AGCT	6 cut(s)	212, 238, 245, 414, 436, 479
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	3 cut(s)	57, 186, 526
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	2 cut(s)	215, 550
AoxI	GGCC	4 cut(s)	74, 456, 788, 812
ApoI	RAATTY	2 cut(s)	441, 447
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	377, 527
Bbv12I	GWGCWC	1 cut(s)	691
BccI	CCATC	3 cut(s)	34, 770, 887
BciT130I	CCWGG	4 cut(s)	57, 84, 102, 756
BcoDI	GTCTC	3 cut(s)	57, 186, 526
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	2 cut(s)	246, 870
BfuAI	ACCTGC	1 cut(s)	863
BglII	AGATCT	1 cut(s)	505
Bme1390I	CCNGG	4 cut(s)	57, 84, 102, 756
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	4 cut(s)	57, 84, 102, 756
BmrI	ACTGGG	2 cut(s)	827, 975
BmsI	GCATC	2 cut(s)	54, 297
BmuI	ACTGGG	2 cut(s)	827, 975
BpmI	CTGGAG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	56, 83
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 89, 115, 710, 887, 929, 965
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	5 cut(s)	122, 147, 210, 822, 970
Bse3DI	GCAATG	2 cut(s)	77, 618
BseBI	CCWGG	4 cut(s)	57, 84, 102, 756
BseDI	CCNNGG	2 cut(s)	56, 83
BseGI	GGATG	5 cut(s)	26, 66, 288, 306, 898
BseLI	CCNNNNNNNGG	7 cut(s)	83, 89, 115, 710, 887, 929, 965
BseMI	GCAATG	2 cut(s)	77, 618
BseMII	CTCAG	2 cut(s)	207, 288
BseNI	ACTGG	5 cut(s)	122, 147, 210, 822, 970
BseRI	GAGGAG	2 cut(s)	266, 1002
BseYI	CCCAGC	2 cut(s)	5, 887
BshFI	GGCC	4 cut(s)	76, 458, 790, 814
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	941
BslI	CCNNNNNNNGG	7 cut(s)	83, 89, 115, 710, 887, 929, 965
BsmAI	GTCTC	3 cut(s)	57, 186, 526
BsmFI	GGGAC	1 cut(s)	941
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	4 cut(s)	76, 458, 790, 814
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	2 cut(s)	312, 505
BspACI	CCGC	3 cut(s)	67, 232, 714
BspANI	GGCC	4 cut(s)	76, 458, 790, 814
BspCNI	CTCAG	2 cut(s)	208, 289
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	2 cut(s)	250, 874
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	77, 618
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	5 cut(s)	122, 147, 210, 822, 970
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	56, 83
BssMI	GATC	2 cut(s)	312, 505
BssNI	GRCGYC	1 cut(s)	40
Bst2UI	CCWGG	4 cut(s)	57, 84, 102, 756
Bst4CI	ACNGT	3 cut(s)	51, 268, 955
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	707
BstC8I	GCNNGC	5 cut(s)	555, 660, 844, 857, 864
BstDEI	CTNAG	3 cut(s)	216, 297, 437
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	5 cut(s)	26, 66, 288, 306, 898
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	2 cut(s)	315, 508
BstMAI	GTCTC	3 cut(s)	57, 186, 526
BstMBI	GATC	2 cut(s)	312, 505
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 164, 508, 852
BstNI	CCWGG	4 cut(s)	57, 84, 102, 756
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	4 cut(s)	55, 82, 100, 754
BstSFI	CTRYAG	2 cut(s)	246, 870
BstX2I	RGATCY	2 cut(s)	312, 505
BstYI	RGATCY	2 cut(s)	312, 505
BsuRI	GGCC	4 cut(s)	76, 458, 790, 814
BtsCI	GGATG	5 cut(s)	26, 66, 288, 306, 898
BtsI	GCAGTG	3 cut(s)	741, 933, 979
BtsIMutI	CAGTG	6 cut(s)	459, 741, 815, 933, 963, 979
BveI	ACCTGC	1 cut(s)	863
Cac8I	GCNNGC	5 cut(s)	555, 660, 844, 857, 864
CaiI	CAGNNNCTG	2 cut(s)	215, 550
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	8 cut(s)	95, 280, 400, 512, 634, 721, 751, 863
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	216, 297, 437
DpnI	GATC	2 cut(s)	314, 507
DpnII	GATC	2 cut(s)	312, 505
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco147I	AGGCCT	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	684
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	4 cut(s)	55, 82, 100, 754
FaeI	CATG	8 cut(s)	98, 283, 403, 515, 637, 724, 754, 866
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	8 cut(s)	94, 279, 399, 511, 633, 720, 750, 862
FauI	CCCGC	1 cut(s)	225
FauNDI	CATATG	1 cut(s)	994
FokI	GGATG	5 cut(s)	13, 73, 275, 293, 905
FspBI	CTAG	1 cut(s)	762
GlaI	GCGC	1 cut(s)	276
GsaI	CCCAGC	2 cut(s)	9, 891
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	4 cut(s)	76, 458, 790, 814
HapII	CCGG	1 cut(s)	363
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	8 cut(s)	98, 283, 403, 515, 637, 724, 754, 866
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	4 cut(s)	622, 724, 731, 998
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	2 cut(s)	377, 527
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	4 cut(s)	292, 310, 670, 728
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	373, 780
HpyCH4III	ACNGT	3 cut(s)	51, 268, 955
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	9 cut(s)	158, 188, 248, 359, 388, 472, 511, 677, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 164, 508, 852
HpyF3I	CTNAG	3 cut(s)	216, 297, 437
HpySE526I	ACGT	1 cut(s)	706
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	8 cut(s)	98, 283, 403, 515, 637, 724, 754, 866
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	312, 505
LmnI	GCTCC	6 cut(s)	103, 118, 235, 908, 969, 989
LweI	GCATC	2 cut(s)	54, 297
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	2 cut(s)	314, 507
MboI	GATC	2 cut(s)	312, 505
MboII	GAAGA	3 cut(s)	388, 631, 694
MflI	RGATCY	2 cut(s)	312, 505
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	7 cut(s)	153, 354, 383, 441, 447, 831, 836
MmeI	TCCRAC	1 cut(s)	905
MnlI	CCTC	9 cut(s)	211, 222, 244, 247, 361, 481, 540, 817, 980
MseI	TTAA	1 cut(s)	492
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	4 cut(s)	57, 84, 102, 756
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	4 cut(s)	57, 84, 102, 756
MwoI	GCNNNNNNNGC	4 cut(s)	73, 164, 508, 852
NdeI	CATATG	1 cut(s)	994
NdeII	GATC	2 cut(s)	312, 505
NlaIII	CATG	8 cut(s)	98, 283, 403, 515, 637, 724, 754, 866
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	866
PaeI	GCATGC	1 cut(s)	866
PceI	AGGCCT	1 cut(s)	790
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	4 cut(s)	622, 724, 731, 998
PflMI	CCANNNNNTGG	3 cut(s)	83, 710, 887
Ppu21I	YACGTR	1 cut(s)	707
Psp6I	CCWGG	4 cut(s)	55, 82, 100, 754
PspFI	CCCAGC	2 cut(s)	5, 887
PspGI	CCWGG	4 cut(s)	55, 82, 100, 754
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	2 cut(s)	250, 874
PstNI	CAGNNNCTG	2 cut(s)	215, 550
PsuI	RGATCY	2 cut(s)	312, 505
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	492
Sau3AI	GATC	2 cut(s)	312, 505
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	57, 84, 102, 756
SduI	GDGCHC	1 cut(s)	691
SfaNI	GCATC	2 cut(s)	54, 297
SfcI	CTRYAG	2 cut(s)	246, 870
SphI	GCATGC	1 cut(s)	866
Sse9I	AATT	7 cut(s)	153, 354, 383, 441, 447, 831, 836
SseBI	AGGCCT	1 cut(s)	790
SsiI	CCGC	3 cut(s)	67, 232, 714
SspMI	CTAG	1 cut(s)	762
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	4 cut(s)	55, 82, 100, 754
TaaI	ACNGT	3 cut(s)	51, 268, 955
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	1 cut(s)	451
TasI	AATT	7 cut(s)	153, 354, 383, 441, 447, 831, 836
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	4 cut(s)	622, 724, 731, 998
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	6 cut(s)	466, 748, 822, 940, 970, 979
TspDTI	ATGAA	3 cut(s)	585, 620, 737
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	6 cut(s)	466, 748, 822, 940, 970, 979
Van91I	CCANNNNNTGG	3 cut(s)	83, 710, 887
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	441, 447
XceI	RCATGY	1 cut(s)	866
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.