Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8518171.1

Orthogroup ID

OG0002508

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2230

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8518171.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1084 bp

gtcgttgaggtcaagcacccgctcacaaggccggagaaccatctttcgatctggcagaacaaacatatacccaactctctttgctttgtctgatttcatcgtagctacaactcggtctccagggatgatgcggcacgggccattgcctgggttaggtcatgctcctggctaccgagttttggagccagtaccccgtgctgaactactggaaaacaaaattgcatatcaagcagcagagataaaacaacttgcaggagacaatcacagactggcagctactgaggtggatttgaggcgggagcttgtagctgcagaggaggaagttcaaacagtcaaggcgcacatgagaagcatccagactgagagcgacatccagatccgagcgttgcttgataagattgtaaaaaaggaacaggaaattgcagccggtgagggtgtgaagaaggaattgcaaaaggctcacatggaagcacacagcttggtggaagcacggaaagagctaagaattcaaattcgacaggccactgatgagttgcagaaagcttgtattgaggttaagaaactgccagatctgcatggtgaacttgatagtttgagacaagaacaccagaggctgcgtgctacttttgaatatgaaaaaggtagaaacatagaacaagttgagcaaatgaaagcaatggagaagaatctaatgggcatggcaggagaagtagaaaggttgcgtgctgaagtcttgaatgcagagaagagagcacaagcaccaaatccacgtaatggcggttacatgaatccagattcttattacactgctaccatgccaggtgctagtgcgtattttgatggttatggaaggccttatgtttcaatgggtaataggccactgggagagggaataattcaatttgccagcagcagcagcaagcagcatgctgctgcaggtattccaactgctggggatggtgctatctggggagcagcatataatcccttgcttggcactgcttctggtggtgctactgtccctaccactgggagcagtgctgtttggggaggagcatatgattcagcacttgctcgtcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

39.45

Weight (kDa)

8.96

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920 AT5G61920
fragaria_vesca	FvH4_4g10270 FvH4_4g10270 FvH4_4g10270
malus_domestica	MD16G1260800.v1.1
prunus_persica	Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.1G098700_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1 Prupe.8G181400_v2.0.a1
pyrus_communis	pycom13g28830 pycom16g22880
rosa_chinensis	RchiOBHm_Chr4g0405071
rosa_laevigata	RLG00000008879
rosa_multiflora	Rmu_co8518171.1_g000001 Rmu_sc0001744.1_g000025
rosa_roxburghii	Rroxscaffold_5G00349240
rosa_rugosa	Rorug04G0052600 Rorug04G0052700 Rorug04G0052800 Rorug04G0052900 Rorug04G0052900 Rorug04G0053000 Rorug04G0053000 Rorug04G0053100 Rorug04G0053200 Rorug04G0053300 Rorug04G0053400
rosa_samantha	Rh4AG127800 Rh4BG121500 Rh4CG135500 Rh4DG121900
rosa_wichuraiana	Rw4G010350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	927
AccB7I	CCANNNNNTGG	3 cut(s)	147, 774, 951
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	4 cut(s)	20, 131, 296, 778
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	505, 511
AcuI	CTGAAG	1 cut(s)	748
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	7 cut(s)	147, 153, 179, 774, 951, 993, 1029
AgsI	TTSAA	6 cut(s)	327, 510, 630, 737, 865, 900
AjnI	CCWGG	4 cut(s)	119, 146, 164, 818
AluBI	AGCT	7 cut(s)	105, 276, 302, 309, 478, 500, 543
AluI	AGCT	7 cut(s)	105, 276, 302, 309, 478, 500, 543
Alw21I	GWGCWC	1 cut(s)	755
Alw26I	GTCTC	3 cut(s)	121, 250, 590
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	2 cut(s)	279, 614
AoxI	GGCC	5 cut(s)	29, 138, 520, 852, 876
ApoI	RAATTY	2 cut(s)	505, 511
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	441, 591
Bbv12I	GWGCWC	1 cut(s)	755
BccI	CCATC	3 cut(s)	48, 834, 951
BciT130I	CCWGG	4 cut(s)	121, 148, 166, 820
BcoDI	GTCTC	3 cut(s)	121, 250, 590
BfaI	CTAG	1 cut(s)	826
BfmI	CTRYAG	2 cut(s)	310, 934
BfuAI	ACCTGC	1 cut(s)	927
BglII	AGATCT	1 cut(s)	569
Bme1390I	CCNGG	4 cut(s)	121, 148, 166, 820
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	4 cut(s)	121, 148, 166, 820
BmrI	ACTGGG	2 cut(s)	891, 1039
BmsI	GCATC	2 cut(s)	118, 361
BmuI	ACTGGG	2 cut(s)	891, 1039
BpmI	CTGGAG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	120, 147
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	7 cut(s)	147, 153, 179, 774, 951, 993, 1029
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	5 cut(s)	186, 211, 274, 886, 1034
Bse3DI	GCAATG	2 cut(s)	141, 682
BseBI	CCWGG	4 cut(s)	121, 148, 166, 820
BseDI	CCNNGG	2 cut(s)	120, 147
BseGI	GGATG	4 cut(s)	130, 352, 370, 962
BseLI	CCNNNNNNNGG	7 cut(s)	147, 153, 179, 774, 951, 993, 1029
BseMI	GCAATG	2 cut(s)	141, 682
BseMII	CTCAG	2 cut(s)	271, 352
BseNI	ACTGG	5 cut(s)	186, 211, 274, 886, 1034
BseRI	GAGGAG	2 cut(s)	330, 1066
BseYI	CCCAGC	1 cut(s)	951
BshFI	GGCC	5 cut(s)	31, 140, 522, 854, 878
BsiHKAI	GWGCWC	1 cut(s)	755
BsiSI	CCGG	2 cut(s)	32, 427
BslFI	GGGAC	1 cut(s)	1005
BslI	CCNNNNNNNGG	7 cut(s)	147, 153, 179, 774, 951, 993, 1029
BsmAI	GTCTC	3 cut(s)	121, 250, 590
BsmFI	GGGAC	1 cut(s)	1005
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	5 cut(s)	31, 140, 522, 854, 878
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	3 cut(s)	48, 376, 569
BspACI	CCGC	4 cut(s)	20, 131, 296, 778
BspANI	GGCC	5 cut(s)	31, 140, 522, 854, 878
BspCNI	CTCAG	2 cut(s)	272, 353
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	314, 938
BspMI	ACCTGC	1 cut(s)	927
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	121
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	141, 682
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	5 cut(s)	186, 211, 274, 886, 1034
BssAI	RCCGGY	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	120, 147
BssMI	GATC	3 cut(s)	48, 376, 569
Bst2UI	CCWGG	4 cut(s)	121, 148, 166, 820
Bst4CI	ACNGT	2 cut(s)	332, 1019
Bst6I	CTCTTC	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	771
BstC8I	GCNNGC	5 cut(s)	619, 724, 908, 921, 928
BstDEI	CTNAG	3 cut(s)	280, 361, 501
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	4 cut(s)	130, 352, 370, 962
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	51, 379, 572
BstMAI	GTCTC	3 cut(s)	121, 250, 590
BstMBI	GATC	3 cut(s)	48, 376, 569
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 137, 228, 572, 916
BstNI	CCWGG	4 cut(s)	121, 148, 166, 820
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	4 cut(s)	119, 146, 164, 818
BstSFI	CTRYAG	2 cut(s)	310, 934
BstX2I	RGATCY	2 cut(s)	376, 569
BstYI	RGATCY	2 cut(s)	376, 569
BsuRI	GGCC	5 cut(s)	31, 140, 522, 854, 878
BtsCI	GGATG	4 cut(s)	130, 352, 370, 962
BtsI	GCAGTG	3 cut(s)	805, 997, 1043
BtsIMutI	CAGTG	6 cut(s)	523, 805, 879, 997, 1027, 1043
BveI	ACCTGC	1 cut(s)	927
Cac8I	GCNNGC	5 cut(s)	619, 724, 908, 921, 928
CaiI	CAGNNNCTG	2 cut(s)	279, 614
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	8 cut(s)	159, 344, 464, 576, 698, 785, 815, 927
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	3 cut(s)	280, 361, 501
DpnI	GATC	3 cut(s)	50, 378, 571
DpnII	GATC	3 cut(s)	48, 376, 569
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Eco147I	AGGCCT	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	748
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	4 cut(s)	119, 146, 164, 818
FaeI	CATG	8 cut(s)	162, 347, 467, 579, 701, 788, 818, 930
FaqI	GGGAC	1 cut(s)	1005
FatI	CATG	8 cut(s)	158, 343, 463, 575, 697, 784, 814, 926
FauI	CCCGC	2 cut(s)	27, 289
FauNDI	CATATG	1 cut(s)	1058
FokI	GGATG	4 cut(s)	137, 339, 357, 969
FspBI	CTAG	1 cut(s)	826
GlaI	GCGC	1 cut(s)	340
GsaI	CCCAGC	1 cut(s)	955
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	5 cut(s)	31, 140, 522, 854, 878
HapII	CCGG	2 cut(s)	32, 427
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	8 cut(s)	162, 347, 467, 579, 701, 788, 818, 930
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	4 cut(s)	686, 788, 795, 1062
HpaII	CCGG	2 cut(s)	32, 427
HphI	GGTGA	2 cut(s)	441, 591
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	2 cut(s)	92, 381
Hpy188III	TCNNGA	4 cut(s)	356, 374, 734, 792
Hpy8I	GTNNAC	1 cut(s)	582
HpyAV	CCTTC	2 cut(s)	437, 844
HpyCH4III	ACNGT	2 cut(s)	332, 1019
HpyCH4IV	ACGT	1 cut(s)	770
HpyCH4V	TGCA	9 cut(s)	222, 252, 312, 423, 452, 536, 575, 741, 936
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 137, 228, 572, 916
HpyF3I	CTNAG	3 cut(s)	280, 361, 501
HpySE526I	ACGT	1 cut(s)	770
Hsp92II	CATG	8 cut(s)	162, 347, 467, 579, 701, 788, 818, 930
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	48, 376, 569
LmnI	GCTCC	6 cut(s)	167, 182, 299, 972, 1033, 1053
LweI	GCATC	2 cut(s)	118, 361
MaeI	CTAG	1 cut(s)	826
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	1 cut(s)	780
MalI	GATC	3 cut(s)	50, 378, 571
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	3 cut(s)	48, 376, 569
MboII	GAAGA	3 cut(s)	452, 695, 758
MflI	RGATCY	2 cut(s)	376, 569
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	7 cut(s)	217, 418, 447, 505, 511, 895, 900
MmeI	TCCRAC	1 cut(s)	969
MnlI	CCTC	9 cut(s)	275, 286, 308, 311, 425, 545, 604, 881, 1044
MseI	TTAA	1 cut(s)	556
MspI	CCGG	2 cut(s)	32, 427
MspR9I	CCNGG	4 cut(s)	121, 148, 166, 820
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	4 cut(s)	121, 148, 166, 820
MwoI	GCNNNNNNNGC	5 cut(s)	28, 137, 228, 572, 916
NdeI	CATATG	1 cut(s)	1058
NdeII	GATC	3 cut(s)	48, 376, 569
NlaIII	CATG	8 cut(s)	162, 347, 467, 579, 701, 788, 818, 930
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	930
PaeI	GCATGC	1 cut(s)	930
PceI	AGGCCT	1 cut(s)	854
PctI	GAATGC	1 cut(s)	743
PfeI	GAWTC	4 cut(s)	686, 788, 795, 1062
PflMI	CCANNNNNTGG	3 cut(s)	147, 774, 951
Ppu21I	YACGTR	1 cut(s)	771
Psp6I	CCWGG	4 cut(s)	119, 146, 164, 818
PspFI	CCCAGC	1 cut(s)	951
PspGI	CCWGG	4 cut(s)	119, 146, 164, 818
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	138
PstI	CTGCAG	2 cut(s)	314, 938
PstNI	CAGNNNCTG	2 cut(s)	279, 614
PsuI	RGATCY	2 cut(s)	376, 569
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	556
Sau3AI	GATC	3 cut(s)	48, 376, 569
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	4 cut(s)	121, 148, 166, 820
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	2 cut(s)	118, 361
SfcI	CTRYAG	2 cut(s)	310, 934
SphI	GCATGC	1 cut(s)	930
Sse9I	AATT	7 cut(s)	217, 418, 447, 505, 511, 895, 900
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	4 cut(s)	20, 131, 296, 778
SspMI	CTAG	1 cut(s)	826
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	4 cut(s)	119, 146, 164, 818
TaaI	ACNGT	2 cut(s)	332, 1019
TaiI	ACGT	1 cut(s)	773
TaqI	TCGA	2 cut(s)	47, 515
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	7 cut(s)	217, 418, 447, 505, 511, 895, 900
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	686, 788, 795, 1062
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	6 cut(s)	530, 812, 886, 1004, 1034, 1043
TspDTI	ATGAA	4 cut(s)	86, 649, 684, 801
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	6 cut(s)	530, 812, 886, 1004, 1034, 1043
Van91I	CCANNNNNTGG	3 cut(s)	147, 774, 951
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	2 cut(s)	505, 511
XceI	RCATGY	1 cut(s)	930
XspI	CTAG	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.