Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

8075797 .. 8080108

Gene Structure 4312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0052600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGCGAGCGTGAAAACCCTTGTACTGCGGCGTGAATGGAAGGGCAGAATGGACAATTCGTGGGGGTCGGGTGCGGTGAAACCGAATAGAACCCCTGCTAATCTATTAGGAATCACTGAAGTCCCTTTCCCGGCGGCTGGGGAGTACCTGGAAAGGAACTGCAAAATGGAAGACAGAGAGAAGAGAGGTGCGGATGATTGTGGAAGGAGGAAAGCAGTGCATTTTATGATTGACAAGGTAACCAAAACTAGTGGCCAGAAGCGGAAAAACAAATTGTATGAGGAAGAAAATAAGGTCATTGATACCGCTGTTGAAGTGGCAAGGGACATGGCGGTTGATGACTGCAAGACAGTCCCTGCTTTTAACGAAGCATCAGAGAATGAGGTCACCATCCGAACAGCATTGCATGGAAAACACTTCAGAAGGACTATGTCTTCCCTGTCTGAGGAGAAGATACTTGCGACATATGAAATGGGGTTTGGGACACTGCACCAAATCCGCTGTACGAAATTGAACCTCCCATTGTGCCAAATGCTAGTTGAAAATTTTGACGTTGCCAACTCATGCATCAAGATACGCGAGAGGAACTTGACAGTGAGTGAGGAAGACTTTAGGCGCATTATGGGAGTCAGAGGTGGAGGGTGTGATGTGGACTTTGAAGGAAGCACCGTTGAGCATGAAATTTTGGCGCTGAAGAGGGAGATAGCAGGGAAGGAGAGCAAGATAACCATAGGTGGACTGAGTAGGTTGCTTATTGAATATGAATTGGTTGATGACACATATAAGGTCGGCTTTGCCTTGTATGCCCTAGCAACTCTGTTATGCCCAGTAACGGGAGCCCACGTGGATGAACGATACCTTATACCATTGAAGGATGCAGGTGCGTTGTCTTCCAAAAACTGGGCAAAGCTTGCATTTGCGAAGTTGGTTGCAGGGGTGTCATCGTTTCAGGCGCTGCGTTATGGTCTAGTAAGAGGTTGCATTCTATTCCTTCAGTTGTTCTACCTAGACGTTGTCGGTAAGGGGATTCTACTATTTCCTAGGATTTATAACCCGGTGATGACTTGGGGCAGGAAGGAGGTAAAGAGGGTTCTGGAAGAAGTTGAGAGGGAGGGCGGATTTGGATGCGAGAGTGTGCGTGTAACGAAAAAGAGCTTCTATGACACGACCCATCAAATGTCGGGATCCGTTGATGCTAGTACAGGGATAAGAACTACTGTAGTGGAGGACTTGTCAGAAGTGAGATCTGATGTAGGAACTGTGAGAGGGGATGTAGAAAATCTGAAGTCAACGGTTGGTCGTTTGGAACCAGACATGGGCCGGTTGAGGAGTGCAATTGTGACGCTAGAAACATCTCTTCGCCAATTGAAGGCTGAGGGTATCGGCCAGATTGTGGCAGAGGTGATTATGGAAGTTTTTGAGGACCTCCATAAGGAGTACACTGGTAATGAAGAGAAGAATGGTTTTCTCACTGGTCAGAAGCAGCACCACACAGAAGCTGGTCTACATCATGGTGAGATGTGGCAAAGTAAATCTGACATTGGTGTCCTCAATGAGGACGACACAATTGGTAGCCAGAGCACCGACTTCCAGAATATTGGGCAAGGGTTTTTTCCAGTGGTGGCTGAGATTTCGCACAGTGATTCCCACCTTCTGACCTATCTCTTCAGCAAGAAGGTCACCGGTGAAGACACTGTTGGGAGCAACGAGGTCGCTAGGTGCGAGGGATGGGCTGTCTCTCGCTGGGATCTGAGCTGCTTGTCACCAATGCAGTGCTTGAGTAGTGAGGAACTTGCGAAGGAGTGTTCATCAGGGATGCAGGTTCAAGGGGTTGTGCCTTCTACCATTAAAATGTGCCGATTGAGAAGATTCGTTGGTAGATTCTTGTCTTGCCAGAAGATATTTTTTCCCATTCATGACGCTGAAATGAAGCATTGGTTTTTGGCTGTCCTGAACATACCGAACGGGCAATGCGAAGTATGGGACAGCAACCCCGATATGTCTGCTTACAAACTCCGGGAGGATTATGCCATAGCATGTATGTCACTGGTTGAAAAGGTTTTTGCCAACGAGATTCGAATGTCACCTGCCATATATGCGAAATTTGGGTCTTTCTCCATCACGTATCCAGAAAGAAGCCCTATACATCCCACCAGCCAAGACTCGGGAATTTTTGTCATTAGAAACATGCAGTTTTACTGCCAGTGCTGGTACCAAGGGTTCAACTCCGGTGACCAGAGGGTTCGCTTGGCACTTGAGATTGTGAATCACCCGAGGAATGATATGGCTGAACTGGTGTGGCAAGCAGCTGCCGAGGATGTCCCGAATGCTGTTGCAGCCGAAGGAGGGGTATCAGCATCAGTGAATGCATGTGGCGTTGTTGCAGTGGCAGGCATGAAGTTCAAGCCACGCCGGGCTAGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX6B

Protein Analysis

808

Amino Acids

90.24

Weight (kDa)

6.46

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	628 - 735	2.7e-12	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1050
AarI	CACCTGC	2 cut(s)	869, 2095
AasI	GACNNNNNNGTC	1 cut(s)	1544
Acc36I	ACCTGC	3 cut(s)	869, 1810, 2095
Acc65I	GGTACC	1 cut(s)	2211
AccB1I	GGYRCC	1 cut(s)	2211
AccB7I	CCANNNNNTGG	2 cut(s)	900, 1393
AccI	GTMKAC	1 cut(s)	1504
AccII	CGCG	1 cut(s)	579
AciI	CCGC	9 cut(s)	28, 74, 134, 191, 262, 306, 332, 499, 1116
AclWI	GGATC	3 cut(s)	1179, 1192, 1755
AcoI	YGGCCR	2 cut(s)	253, 1384
AcsI	RAATTY	4 cut(s)	544, 681, 2102, 2169
AcuI	CTGAAG	6 cut(s)	138, 403, 713, 977, 1304, 1651
AcvI	CACGTG	1 cut(s)	844
AfaI	GTAC	6 cut(s)	24, 146, 505, 1201, 1439, 2213
AgeI	ACCGGT	1 cut(s)	1682
AhlI	ACTAGT	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	4 cut(s)	462, 494, 1680, 1712
AluBI	AGCT	5 cut(s)	910, 1155, 1499, 1755, 2309
AluI	AGCT	5 cut(s)	910, 1155, 1499, 1755, 2309
Alw21I	GWGCWC	1 cut(s)	1583
Alw26I	GTCTC	1 cut(s)	1741
AlwI	GGATC	3 cut(s)	1179, 1192, 1755
AlwNI	CAGNNNCTG	3 cut(s)	356, 955, 1499
Ama87I	CYCGRG	2 cut(s)	2164, 2272
AoxI	GGCC	3 cut(s)	253, 1318, 1384
ApeKI	GCWGC	6 cut(s)	955, 1483, 1755, 2306, 2309, 2336
ApoI	RAATTY	4 cut(s)	544, 681, 2102, 2169
ArsI	GACNNNNNNTTYG	2 cut(s)	2093, 2125
AsiGI	ACCGGT	1 cut(s)	1682
Asp718I	GGTACC	1 cut(s)	2211
AspA2I	CCTAGG	1 cut(s)	1040
AspLEI	GCGC	4 cut(s)	618, 691, 955, 2424
AspS9I	GGNCC	2 cut(s)	1318, 1423
AsuC2I	CCSGG	4 cut(s)	131, 1055, 2018, 2414
AsuII	TTCGAA	1 cut(s)	2077
AvaI	CYCGRG	2 cut(s)	2164, 2272
AvaII	GGWCC	1 cut(s)	1423
AvrII	CCTAGG	1 cut(s)	1040
BaeI	ACNNNNGTAYC	2 cut(s)	294, 327
BalI	TGGCCA	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	1184
BanI	GGYRCC	1 cut(s)	2211
BanII	GRGCYC	1 cut(s)	841
BarI	GAAGNNNNNNTAC	2 cut(s)	1488, 1520
BbrPI	CACGTG	1 cut(s)	844
BbsI	GAAGAC	5 cut(s)	177, 426, 612, 882, 1695
Bbv12I	GWGCWC	1 cut(s)	1583
BbvCI	CCTCAGC	1 cut(s)	1374
BbvI	GCAGC	6 cut(s)	942, 1495, 1742, 2296, 2318, 2348
BccI	CCATC	4 cut(s)	398, 1179, 1722, 2126
BcgI	CGANNNNNNTGC	4 cut(s)	1693, 1727, 1985, 2019
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	2136
BcnI	CCSGG	4 cut(s)	131, 1055, 2018, 2414
BcoDI	GTCTC	1 cut(s)	1741
BcuI	ACTAGT	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	1218
BfoI	RGCGCY	3 cut(s)	692, 956, 2425
BfuAI	ACCTGC	3 cut(s)	869, 1810, 2095
BfuI	GTATCC	1 cut(s)	2136
BglII	AGATCT	1 cut(s)	1244
BisI	GCNGC	8 cut(s)	29, 135, 956, 1484, 1756, 2307, 2310, 2337
BlnI	CCTAGG	1 cut(s)	1040
BlsI	GCNGC	8 cut(s)	30, 136, 957, 1485, 1757, 2308, 2311, 2338
Bme1390I	CCNGG	5 cut(s)	131, 149, 1055, 2018, 2414
Bme18I	GGWCC	1 cut(s)	1423
BmeT110I	CYCGRG	2 cut(s)	2164, 2272
BmgT120I	GGNCC	2 cut(s)	1318, 1423
BmiI	GGNNCC	4 cut(s)	838, 1186, 1308, 2213
BmrFI	CCNGG	5 cut(s)	131, 149, 1055, 2018, 2414
BmrI	ACTGGG	2 cut(s)	821, 910
BmsI	GCATC	7 cut(s)	380, 576, 865, 1115, 1183, 1806, 2366
BmuI	ACTGGG	2 cut(s)	821, 910
BpiI	GAAGAC	5 cut(s)	177, 426, 612, 882, 1695
Bpu10I	CCTNAGC	1 cut(s)	1374
Bpu14I	TTCGAA	1 cut(s)	2077
BpuEI	CTTGAG	2 cut(s)	1798, 2276
BpuMI	CCSGG	4 cut(s)	131, 1055, 2018, 2414
BsaAI	YACGTR	2 cut(s)	844, 2124
BsaJI	CCNNGG	4 cut(s)	1040, 2215, 2273, 2313
BsaWI	WCCGGW	2 cut(s)	1682, 2228
BsaXI	ACNNNNNCTCC	4 cut(s)	828, 858, 1217, 1247
Bse118I	RCCGGY	2 cut(s)	1320, 1682
Bse1I	ACTGG	8 cut(s)	827, 905, 1447, 1477, 1616, 2052, 2203, 2298
Bse3DI	GCAATG	2 cut(s)	401, 1976
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	1040, 2215, 2273, 2313
BseMI	GCAATG	2 cut(s)	401, 1976
BseMII	CTCAG	5 cut(s)	435, 731, 1365, 1617, 1742
BseNI	ACTGG	8 cut(s)	827, 905, 1447, 1477, 1616, 2052, 2203, 2298
BseRI	GAGGAG	2 cut(s)	461, 1342
BseXI	GCAGC	6 cut(s)	942, 1495, 1742, 2296, 2318, 2348
BseYI	CCCAGC	2 cut(s)	137, 1743
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	3 cut(s)	255, 1320, 1386
BshNI	GGYRCC	1 cut(s)	2211
BshTI	ACCGGT	1 cut(s)	1682
BsiHKAI	GWGCWC	1 cut(s)	1583
BsiHKCI	CYCGRG	2 cut(s)	2164, 2272
BsiSI	CCGG	7 cut(s)	131, 1055, 1321, 1683, 2017, 2229, 2413
BslFI	GGGAC	6 cut(s)	107, 338, 338, 496, 1997, 2306
BsmAI	GTCTC	1 cut(s)	1741
BsmFI	GGGAC	6 cut(s)	107, 338, 338, 496, 1997, 2306
BsmI	GAATGC	3 cut(s)	981, 2332, 2371
BsnI	GGCC	3 cut(s)	255, 1320, 1386
BsoBI	CYCGRG	2 cut(s)	2164, 2272
Bsp119I	TTCGAA	1 cut(s)	2077
Bsp1286I	GDGCHC	2 cut(s)	841, 1583
Bsp143I	GATC	3 cut(s)	1184, 1244, 1747
BspACI	CCGC	9 cut(s)	28, 74, 134, 191, 262, 306, 332, 499, 1116
BspANI	GGCC	3 cut(s)	255, 1320, 1386
BspCNI	CTCAG	5 cut(s)	436, 732, 1366, 1618, 1743
BspFNI	CGCG	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	1915
BspLI	GGNNCC	4 cut(s)	838, 1186, 1308, 2213
BspMI	ACCTGC	3 cut(s)	869, 1810, 2095
BspPI	GGATC	3 cut(s)	1179, 1192, 1755
BspT104I	TTCGAA	1 cut(s)	2077
BspT107I	GGYRCC	1 cut(s)	2211
BsrDI	GCAATG	2 cut(s)	401, 1976
BsrFI	RCCGGY	2 cut(s)	1320, 1682
BsrI	ACTGG	8 cut(s)	827, 905, 1447, 1477, 1616, 2052, 2203, 2298
BssAI	RCCGGY	2 cut(s)	1320, 1682
BssECI	CCNNGG	4 cut(s)	1040, 2215, 2273, 2313
BssMI	GATC	3 cut(s)	1184, 1244, 1747
BssT1I	CCWWGG	2 cut(s)	1040, 2215
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	8 cut(s)	352, 595, 670, 1219, 1261, 1294, 1640, 1696
Bst6I	CTCTTC	5 cut(s)	176, 689, 1362, 1446, 1670
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstBAI	YACGTR	2 cut(s)	844, 2124
BstBI	TTCGAA	1 cut(s)	2077
BstC8I	GCNNGC	4 cut(s)	7, 912, 2304, 2392
BstDEI	CTNAG	5 cut(s)	444, 740, 1374, 1626, 1751
BstEII	GGTNACC	4 cut(s)	238, 385, 1678, 2231
BstENI	CCTNNNNNAGG	3 cut(s)	443, 1430, 1553
BstFNI	CGCG	1 cut(s)	579
BstH2I	RGCGCY	3 cut(s)	692, 956, 2425
BstHHI	GCGC	4 cut(s)	618, 691, 955, 2424
BstKTI	GATC	3 cut(s)	1187, 1247, 1750
BstMAI	GTCTC	1 cut(s)	1741
BstMBI	GATC	3 cut(s)	1184, 1244, 1747
BstMWI	GCNNNNNNNGC	4 cut(s)	803, 911, 2096, 2336
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	3 cut(s)	2040, 2191, 2373
BstPI	GGTNACC	4 cut(s)	238, 385, 1678, 2231
BstSCI	CCNGG	5 cut(s)	129, 147, 1053, 2016, 2412
BstSFI	CTRYAG	1 cut(s)	1218
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	6 cut(s)	942, 1495, 1742, 2296, 2318, 2348
BstV2I	GAAGAC	5 cut(s)	177, 426, 612, 882, 1695
BstX2I	RGATCY	3 cut(s)	1184, 1244, 1747
BstXI	CCANNNNNNTGG	1 cut(s)	1598
BstYI	RGATCY	3 cut(s)	1184, 1244, 1747
BsuI	GTATCC	1 cut(s)	2136
BsuRI	GGCC	3 cut(s)	255, 1320, 1386
BtsI	GCAGTG	4 cut(s)	222, 485, 1778, 2391
BveI	ACCTGC	3 cut(s)	869, 1810, 2095
Cac8I	GCNNGC	4 cut(s)	7, 912, 2304, 2392
CaiI	CAGNNNCTG	3 cut(s)	356, 955, 1499
CciI	TCATGA	1 cut(s)	1915
CfoI	GCGC	4 cut(s)	618, 691, 955, 2424
Cfr10I	RCCGGY	2 cut(s)	1320, 1682
Cfr13I	GGNCC	2 cut(s)	1318, 1423
CseI	GACGC	2 cut(s)	1351, 1928
Csp6I	GTAC	6 cut(s)	23, 145, 504, 1200, 1438, 2212
CspAI	ACCGGT	1 cut(s)	1682
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviQI	GTAC	6 cut(s)	23, 145, 504, 1200, 1438, 2212
DdeI	CTNAG	5 cut(s)	444, 740, 1374, 1626, 1751
DpnI	GATC	3 cut(s)	1186, 1246, 1749
DpnII	GATC	3 cut(s)	1184, 1244, 1747
DrdI	GACNNNNNNGTC	1 cut(s)	1544
DseDI	GACNNNNNNGTC	1 cut(s)	1544
EaeI	YGGCCR	2 cut(s)	253, 1384
Eam1104I	CTCTTC	5 cut(s)	176, 689, 1362, 1446, 1670
EarI	CTCTTC	5 cut(s)	176, 689, 1362, 1446, 1670
EciI	GGCGGA	1 cut(s)	1131
Eco130I	CCWWGG	2 cut(s)	1040, 2215
Eco24I	GRGCYC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	1423
Eco57I	CTGAAG	6 cut(s)	138, 403, 713, 977, 1304, 1651
Eco72I	CACGTG	1 cut(s)	844
Eco88I	CYCGRG	2 cut(s)	2164, 2272
Eco91I	GGTNACC	4 cut(s)	238, 385, 1678, 2231
EcoNI	CCTNNNNNAGG	3 cut(s)	443, 1430, 1553
EcoO109I	RGGNCCY	1 cut(s)	1423
EcoO65I	GGTNACC	4 cut(s)	238, 385, 1678, 2231
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	1040, 2215
EcoT22I	ATGCAT	2 cut(s)	569, 2371
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	2 cut(s)	1040, 2215
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FaqI	GGGAC	6 cut(s)	107, 338, 338, 496, 1997, 2306
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	1504
Fnu4HI	GCNGC	8 cut(s)	29, 135, 956, 1484, 1756, 2307, 2310, 2337
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	8 cut(s)	29, 135, 956, 1484, 1756, 2307, 2310, 2337
GlaI	GCGC	4 cut(s)	617, 690, 954, 2423
GluI	GCNGC	8 cut(s)	29, 135, 956, 1484, 1756, 2307, 2310, 2337
GsaI	CCCAGC	2 cut(s)	141, 1747
HaeII	RGCGCY	3 cut(s)	692, 956, 2425
HaeIII	GGCC	3 cut(s)	255, 1320, 1386
HapII	CCGG	7 cut(s)	131, 1055, 1321, 1683, 2017, 2229, 2413
HgaI	GACGC	2 cut(s)	1351, 1928
HhaI	GCGC	4 cut(s)	618, 691, 955, 2424
Hin6I	GCGC	4 cut(s)	616, 689, 953, 2422
HinP1I	GCGC	4 cut(s)	616, 689, 953, 2422
HincII	GTYRAC	1 cut(s)	1290
HindII	GTYRAC	1 cut(s)	1290
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	9 cut(s)	111, 627, 1027, 1643, 1869, 1881, 2074, 2162, 2266
HpaII	CCGG	7 cut(s)	131, 1055, 1321, 1683, 2017, 2229, 2413
Hpy166II	GTNNAC	5 cut(s)	652, 737, 1290, 1440, 1505
Hpy188III	TCNNGA	9 cut(s)	571, 1094, 1182, 1591, 1916, 1951, 2129, 2166, 2323
Hpy8I	GTNNAC	5 cut(s)	652, 737, 1290, 1440, 1505
HpyCH4III	ACNGT	8 cut(s)	352, 595, 670, 1219, 1261, 1294, 1640, 1696
HpyCH4IV	ACGT	4 cut(s)	552, 843, 1011, 2123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	803, 911, 2096, 2336
HpyF3I	CTNAG	5 cut(s)	444, 740, 1374, 1626, 1751
HpySE526I	ACGT	4 cut(s)	552, 843, 1011, 2123
HspAI	GCGC	4 cut(s)	616, 689, 953, 2422
KpnI	GGTACC	1 cut(s)	2215
Kzo9I	GATC	3 cut(s)	1184, 1244, 1747
LmnI	GCTCC	2 cut(s)	836, 1701
Lsp1109I	GCAGC	6 cut(s)	942, 1495, 1742, 2296, 2318, 2348
LweI	GCATC	7 cut(s)	380, 576, 865, 1115, 1183, 1806, 2366
MaeII	ACGT	4 cut(s)	552, 843, 1011, 2123
MalI	GATC	3 cut(s)	1186, 1246, 1749
MboI	GATC	3 cut(s)	1184, 1244, 1747
MfeI	CAATTG	3 cut(s)	1335, 1364, 1566
MflI	RGATCY	3 cut(s)	1184, 1244, 1747
MhlI	GDGCHC	2 cut(s)	841, 1583
MlsI	TGGCCA	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	2 cut(s)	636, 2156
Mox20I	TGGCCA	1 cut(s)	255
Mph1103I	ATGCAT	2 cut(s)	569, 2371
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	2 cut(s)	363, 1848
MslI	CAYNNNNRTG	3 cut(s)	846, 1512, 1850
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	3 cut(s)	308, 501, 2309
MspI	CCGG	7 cut(s)	131, 1055, 1321, 1683, 2017, 2229, 2413
MspR9I	CCNGG	5 cut(s)	131, 149, 1055, 2018, 2414
MunI	CAATTG	3 cut(s)	1335, 1364, 1566
Mva1269I	GAATGC	3 cut(s)	981, 2332, 2371
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	803, 911, 2096, 2336
NciI	CCSGG	4 cut(s)	131, 1055, 2018, 2414
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	3 cut(s)	1184, 1244, 1747
NlaIV	GGNNCC	4 cut(s)	838, 1186, 1308, 2213
NmeAIII	GCCGAG	1 cut(s)	2338
NmuCI	GTSAC	7 cut(s)	385, 1339, 1678, 1761, 2043, 2082, 2231
NsiI	ATGCAT	2 cut(s)	569, 2371
NspI	RCATGY	3 cut(s)	2040, 2191, 2373
NspV	TTCGAA	1 cut(s)	2077
PagI	TCATGA	1 cut(s)	1915
PaqCI	CACCTGC	2 cut(s)	869, 2095
PcsI	WCGNNNNNNNCGW	2 cut(s)	1719, 1971
PctI	GAATGC	3 cut(s)	981, 2332, 2371
PfeI	GAWTC	7 cut(s)	111, 1027, 1643, 1869, 1881, 2074, 2266
PflFI	GACNNNGTC	2 cut(s)	430, 1013
PflMI	CCANNNNNTGG	2 cut(s)	900, 1393
PfoI	TCCNGGA	1 cut(s)	2016
PinAI	ACCGGT	1 cut(s)	1682
PkrI	GCNGC	8 cut(s)	30, 136, 957, 1485, 1757, 2308, 2311, 2338
PleI	GAGTC	2 cut(s)	635, 2156
PmaCI	CACGTG	1 cut(s)	844
PmlI	CACGTG	1 cut(s)	844
PpsI	GAGTC	2 cut(s)	635, 2156
Ppu21I	YACGTR	2 cut(s)	844, 2124
PpuMI	RGGWCCY	1 cut(s)	1423
PsiI	TTATAA	1 cut(s)	1050
Psp5II	RGGWCCY	1 cut(s)	1423
Psp6I	CCWGG	1 cut(s)	147
PspCI	CACGTG	1 cut(s)	844
PspEI	GGTNACC	4 cut(s)	238, 385, 1678, 2231
PspFI	CCCAGC	2 cut(s)	137, 1743
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	4 cut(s)	838, 1186, 1308, 2213
PspPI	GGNCC	2 cut(s)	1318, 1423
PspPPI	RGGWCCY	1 cut(s)	1423
PsrI	GAACNNNNNNTAC	4 cut(s)	1074, 1106, 2204, 2236
PstNI	CAGNNNCTG	3 cut(s)	356, 955, 1499
PsuI	RGATCY	3 cut(s)	1184, 1244, 1747
PsyI	GACNNNGTC	2 cut(s)	430, 1013
PvuII	CAGCTG	1 cut(s)	2309
RsaI	GTAC	6 cut(s)	24, 146, 505, 1201, 1439, 2213
RsaNI	GTAC	6 cut(s)	23, 145, 504, 1200, 1438, 2212
RseI	CAYNNNNRTG	3 cut(s)	846, 1512, 1850
SaqAI	TTAA	2 cut(s)	363, 1848
SatI	GCNGC	8 cut(s)	29, 135, 956, 1484, 1756, 2307, 2310, 2337
Sau3AI	GATC	3 cut(s)	1184, 1244, 1747
Sau96I	GGNCC	2 cut(s)	1318, 1423
SchI	GAGTC	2 cut(s)	636, 2156
ScrFI	CCNGG	5 cut(s)	131, 149, 1055, 2018, 2414
SduI	GDGCHC	2 cut(s)	841, 1583
SfaNI	GCATC	7 cut(s)	380, 576, 865, 1115, 1183, 1806, 2366
SfcI	CTRYAG	1 cut(s)	1218
SfuI	TTCGAA	1 cut(s)	2077
SgrAI	CRCCGGYG	1 cut(s)	1682
SinI	GGWCC	1 cut(s)	1423
SmiMI	CAYNNNNRTG	3 cut(s)	846, 1512, 1850
SmlI	CTYRAG	2 cut(s)	1777, 2255
SmoI	CTYRAG	2 cut(s)	1777, 2255
SpeI	ACTAGT	1 cut(s)	248
SsiI	CCGC	9 cut(s)	28, 74, 134, 191, 262, 306, 332, 499, 1116
SspI	AATATT	1 cut(s)	1597
StyD4I	CCNGG	5 cut(s)	129, 147, 1053, 2016, 2412
StyI	CCWWGG	2 cut(s)	1040, 2215
TaaI	ACNGT	8 cut(s)	352, 595, 670, 1219, 1261, 1294, 1640, 1696
TaiI	ACGT	4 cut(s)	555, 846, 1014, 2126
TaqI	TCGA	1 cut(s)	2077
TatI	WGTACW	3 cut(s)	22, 1199, 1437
TauI	GCSGC	2 cut(s)	31, 137
TfiI	GAWTC	7 cut(s)	111, 1027, 1643, 1869, 1881, 2074, 2266
Tru1I	TTAA	2 cut(s)	363, 1848
Tru9I	TTAA	2 cut(s)	363, 1848
TseFI	GTSAC	7 cut(s)	385, 1339, 1678, 1761, 2043, 2082, 2231
TseI	GCWGC	6 cut(s)	955, 1483, 1755, 2306, 2309, 2336
Tsp45I	GTSAC	7 cut(s)	385, 1339, 1678, 1761, 2043, 2082, 2231
TspDTI	ATGAA	9 cut(s)	483, 693, 777, 864, 1464, 1797, 1904, 1943, 2411
TspGWI	ACGGA	1 cut(s)	1177
Tth111I	GACNNNGTC	2 cut(s)	430, 1013
Van91I	CCANNNNNTGG	2 cut(s)	900, 1393
VpaK11BI	GGWCC	1 cut(s)	1423
XagI	CCTNNNNNAGG	3 cut(s)	443, 1430, 1553
XapI	RAATTY	4 cut(s)	544, 681, 2102, 2169
XceI	RCATGY	3 cut(s)	2040, 2191, 2373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1496
XmaJI	CCTAGG	1 cut(s)	1040
XmiI	GTMKAC	1 cut(s)	1504
Zsp2I	ATGCAT	2 cut(s)	569, 2371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.