Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

23676345 .. 23676794

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1271700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGCTCAGTCGAAAGGTATGACATTGGTAGAAATGAATGGGTTGCAATGGACGGGTTGCCAGGTTTTCGGGCTGGGTGCGCGGGGTTTTTTGTTGGGGATGGCGAAGAGAGGGAGTTATGGGTTATGGGTGGGTACGGCAAGTCCAGAATAATTTCAGGGGTTTTTCCGATGGACGAGCATTATAGAGACACCGTGGTAATGGAATTGAAGAATGGGAATGGTGGTTGCAGGTGGAGAGAGGTTGGAGATATGTGGGAAGCAGAGGAGAGGATGAGACTAGGCAAAACTGTTGTTGTGGAAGATGGTGATGAACTGGGTTTGGGTAGATTTGATTTTTTTTTTTTTTCTTCTCCTCCTTCTTCTTCCTCTTCCTTCTTCTTCTTCTGGGTTCTTCTTCCTTCTTCTGATGAGGTGCAGTTCGGGGTTTTTTTTTTTTTTTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

150

Amino Acids

16.98

Weight (kDa)

4.52

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	222
AccII	CGCG	1 cut(s)	83
AciI	CCGC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	183, 271
Asp700I	GAANNNNTTC	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	3 cut(s)	95, 166, 299
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	183, 271
BfaI	CTAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	106, 279
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	2 cut(s)	281, 345
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	2 cut(s)	183, 271
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	196, 292
Bst6I	CTCTTC	2 cut(s)	102, 376
BstDEI	CTNAG	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	106, 279
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	83
BstMAI	GTCTC	2 cut(s)	183, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	106, 279
BveI	ACCTGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	136
CviJI	RGCY	2 cut(s)	6, 74
CviKI_1	RGCY	2 cut(s)	6, 74
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	7
Eam1104I	CTCTTC	2 cut(s)	102, 376
EarI	CTCTTC	2 cut(s)	102, 376
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	8
FaiI	YATR	5 cut(s)	21, 121, 128, 186, 254
FauI	CCCGC	1 cut(s)	76
FokI	GGATG	2 cut(s)	113, 286
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	82
GsaI	CCCAGC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	171, 409
Hpy188III	TCNNGA	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	369, 385, 411
HpyCH4III	ACNGT	2 cut(s)	196, 292
HpyCH4V	TGCA	3 cut(s)	47, 231, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	7
HspAI	GCGC	1 cut(s)	81
LpnPI	CCDG	8 cut(s)	48, 60, 75, 144, 160, 217, 302, 373
MaeI	CTAG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	153, 206, 444
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	105, 235, 259, 264, 366, 379, 406
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	2 cut(s)	443, 448
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	80
PaqCI	CACCTGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	443, 448
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 20, 67, 236, 246, 417
Sse9I	AATT	3 cut(s)	153, 206, 444
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	196, 292
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	153, 206, 444
Tru1I	TTAA	2 cut(s)	443, 448
Tru9I	TTAA	2 cut(s)	443, 448
TspDTI	ATGAA	2 cut(s)	51, 327
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.