Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Forward (+)

33016802 .. 33019803

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTGCGAAGGTTCGGATTCCAACCGGATCATCGTCACCGGAGGCGGTTCCCGCCACATCATGTTCGGTGCCACCGGGAGCAAGATGACCTCGGTCGAGAGGTGTGATATGTGTAGAGACGAGTGGGTGGCCATGGAAGGGCTACCGAGCTTTCGGCCGGTGTGTTGGGTTCTTTGCGGGGATGTGGAGGAGAGGGAGTTTTGGGTGATGGGCGGTACGGCCCGTGCCAAGACTATATCGGAGGTGGTGCGGGTGGACGAGTATTACCGAAATGCGGTGGTGATGGAATTGACAAATCGGAATGGTGGTGGCAGGTGGAAGGAGACTAGTGATATGTGGAAAGGAGGGGAGAGAATGAGGCTTGGGAAAATTGTGGTGGTTGATAATGAGGTTGATCCTGCACAAACCTGGTATATTATGGTTTCACCTTCATTGTACTTGGGTTTTGATGCTTCCATAATATGGGTTGGGCAGGAATCTCTCTCTCTCTCTCTCTCTCTCGTCCACTCCCTCGGAATCAAAAACCTTCGGCCGACCCGACCCGGACCCGGTGATCCGACCCGGTCGGAACTCGCAGCTCCGGCCACCTCCGGCGACGAAACTTTCCGAGAATGGGTCGCCTCCGCCGTCCGGTCCTCCCTCCGGTGGTCTCCATCGACGATTCTTACCCACGGCGGCGCTGCAAGTCTTCCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

232

Amino Acids

25.52

Weight (kDa)

5.72

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	462
AciI	CCGC	8 cut(s)	45, 52, 177, 213, 250, 275, 624, 675
AclWI	GGATC	3 cut(s)	35, 389, 548
AcoI	YGGCCR	4 cut(s)	129, 155, 530, 582
AfaI	GTAC	2 cut(s)	217, 437
AfiI	CCNNNNNNNGG	8 cut(s)	138, 274, 462, 548, 613, 630, 642, 645
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	2 cut(s)	150, 578
AluI	AGCT	2 cut(s)	150, 578
Alw26I	GTCTC	3 cut(s)	111, 317, 654
AlwI	GGATC	3 cut(s)	35, 389, 548
AoxI	GGCC	5 cut(s)	129, 155, 219, 530, 582
ApeKI	GCWGC	2 cut(s)	575, 680
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	3 cut(s)	220, 545, 633
AsuC2I	CCSGG	4 cut(s)	76, 543, 549, 562
AsuHPI	GGTGA	5 cut(s)	28, 217, 292, 417, 563
AvaII	GGWCC	2 cut(s)	545, 633
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	2 cut(s)	587, 667
BccI	CCATC	3 cut(s)	202, 277, 661
BceAI	ACGGC	3 cut(s)	234, 611, 688
BciT130I	CCWGG	1 cut(s)	409
BcnI	CCSGG	4 cut(s)	76, 543, 549, 562
BcoDI	GTCTC	3 cut(s)	111, 317, 654
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	3 cut(s)	576, 676, 681
BlsI	GCNGC	3 cut(s)	577, 677, 682
Bme1390I	CCNGG	5 cut(s)	76, 409, 543, 549, 562
Bme18I	GGWCC	2 cut(s)	545, 633
BmgT120I	GGNCC	3 cut(s)	220, 545, 633
BmiI	GGNNCC	3 cut(s)	49, 70, 547
BmrFI	CCNGG	5 cut(s)	76, 409, 543, 549, 562
BmsI	GCATC	1 cut(s)	439
BoxI	GACNNNNGTC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	680
BpuMI	CCSGG	4 cut(s)	76, 543, 549, 562
BsaI	GGTCTC	1 cut(s)	654
BsaJI	CCNNGG	4 cut(s)	90, 132, 511, 670
BsaWI	WCCGGW	4 cut(s)	24, 38, 630, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	8 cut(s)	138, 274, 462, 548, 613, 630, 642, 645
Bse118I	RCCGGY	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	4 cut(s)	90, 132, 511, 670
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	8 cut(s)	138, 274, 462, 548, 613, 630, 642, 645
BseRI	GAGGAG	1 cut(s)	203
BseX3I	CGGCCG	2 cut(s)	155, 530
BseXI	GCAGC	2 cut(s)	587, 667
BsgI	GTGCAG	1 cut(s)	384
Bsh1285I	CGRYCG	4 cut(s)	96, 158, 533, 566
BshFI	GGCC	5 cut(s)	131, 157, 221, 532, 584
BshNI	GGYRCC	1 cut(s)	68
BsiEI	CGRYCG	4 cut(s)	96, 158, 533, 566
BslI	CCNNNNNNNGG	8 cut(s)	138, 274, 462, 548, 613, 630, 642, 645
BsmAI	GTCTC	3 cut(s)	111, 317, 654
BsmBI	CGTCTC	1 cut(s)	111
BsnI	GGCC	5 cut(s)	131, 157, 221, 532, 584
Bso31I	GGTCTC	1 cut(s)	654
Bsp143I	GATC	3 cut(s)	27, 394, 553
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	8 cut(s)	45, 52, 177, 213, 250, 275, 624, 675
BspANI	GGCC	5 cut(s)	131, 157, 221, 532, 584
BspLI	GGNNCC	3 cut(s)	49, 70, 547
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	3 cut(s)	35, 389, 548
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	4 cut(s)	90, 132, 511, 670
BssMI	GATC	3 cut(s)	27, 394, 553
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	409
BstDSI	CCRYGG	2 cut(s)	132, 670
BstF5I	GGATG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	3 cut(s)	30, 397, 556
BstMAI	GTCTC	3 cut(s)	111, 317, 654
BstMBI	GATC	3 cut(s)	27, 394, 553
BstMCI	CGRYCG	4 cut(s)	96, 158, 533, 566
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 581
BstNI	CCWGG	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	5 cut(s)	74, 407, 541, 547, 560
BstV1I	GCAGC	2 cut(s)	587, 667
BstV2I	GAAGAC	1 cut(s)	680
BstZI	CGGCCG	2 cut(s)	155, 530
BsuRI	GGCC	5 cut(s)	131, 157, 221, 532, 584
BtgI	CCRYGG	2 cut(s)	132, 670
BtsCI	GGATG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	680
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	220, 545, 633
CsiI	ACCWGGT	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	216, 436
CviAII	CATG	2 cut(s)	61, 133
CviJI	RGCY	9 cut(s)	131, 142, 150, 157, 221, 361, 532, 578, 584
CviKI_1	RGCY	9 cut(s)	131, 142, 150, 157, 221, 361, 532, 578, 584
CviQI	GTAC	2 cut(s)	216, 436
DpnI	GATC	3 cut(s)	29, 396, 555
DpnII	GATC	3 cut(s)	27, 394, 553
EaeI	YGGCCR	4 cut(s)	129, 155, 530, 582
EagI	CGGCCG	2 cut(s)	155, 530
EciI	GGCGGA	1 cut(s)	613
EclXI	CGGCCG	2 cut(s)	155, 530
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	654
Eco47I	GGWCC	2 cut(s)	545, 633
Eco52I	CGGCCG	2 cut(s)	155, 530
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	64, 136
FaiI	YATR	9 cut(s)	62, 110, 134, 236, 335, 414, 419, 458, 463
FatI	CATG	2 cut(s)	60, 132
FauI	CCCGC	3 cut(s)	59, 170, 243
Fnu4HI	GCNGC	3 cut(s)	576, 676, 681
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	3 cut(s)	576, 676, 681
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	3 cut(s)	576, 676, 681
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	5 cut(s)	131, 157, 221, 532, 584
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	2 cut(s)	64, 136
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HinfI	GANTC	4 cut(s)	17, 476, 516, 661
HphI	GGTGA	5 cut(s)	28, 217, 292, 417, 563
Hpy166II	GTNNAC	2 cut(s)	256, 505
Hpy188I	TCNGA	7 cut(s)	16, 241, 300, 515, 558, 568, 608
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	256, 505
Hpy99I	CGWCG	2 cut(s)	599, 661
HpyAV	CCTTC	4 cut(s)	131, 313, 438, 536
HpyCH4V	TGCA	2 cut(s)	401, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 581
Hsp92II	CATG	2 cut(s)	64, 136
HspAI	GCGC	1 cut(s)	678
Kzo9I	GATC	3 cut(s)	27, 394, 553
LmnI	GCTCC	2 cut(s)	78, 583
Lsp1109I	GCAGC	2 cut(s)	587, 667
LweI	GCATC	1 cut(s)	439
MabI	ACCWGGT	1 cut(s)	407
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	29, 396, 555
MboI	GATC	3 cut(s)	27, 394, 553
MboII	GAAGA	1 cut(s)	680
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	287, 369
MluNI	TGGCCA	1 cut(s)	131
MmeI	TCCRAC	3 cut(s)	45, 546, 581
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	131
MspR9I	CCNGG	5 cut(s)	76, 409, 543, 549, 562
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	51, 581
NciI	CCSGG	4 cut(s)	76, 543, 549, 562
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	27, 394, 553
NlaIII	CATG	2 cut(s)	64, 136
NlaIV	GGNNCC	3 cut(s)	49, 70, 547
NmuCI	GTSAC	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	535, 624
PfeI	GAWTC	4 cut(s)	17, 476, 516, 661
PflFI	GACNNNGTC	1 cut(s)	562
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	3 cut(s)	577, 677, 682
PshAI	GACNNNNGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	49, 70, 547
PspPI	GGNCC	3 cut(s)	220, 545, 633
PsyI	GACNNNGTC	1 cut(s)	562
RsaI	GTAC	2 cut(s)	217, 437
RsaNI	GTAC	2 cut(s)	216, 436
SatI	GCNGC	3 cut(s)	576, 676, 681
Sau3AI	GATC	3 cut(s)	27, 394, 553
Sau96I	GGNCC	3 cut(s)	220, 545, 633
ScrFI	CCNGG	5 cut(s)	76, 409, 543, 549, 562
SexAI	ACCWGGT	1 cut(s)	407
SfaNI	GCATC	1 cut(s)	439
SinI	GGWCC	2 cut(s)	545, 633
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	2 cut(s)	287, 369
SsiI	CCGC	8 cut(s)	45, 52, 177, 213, 250, 275, 624, 675
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	5 cut(s)	74, 407, 541, 547, 560
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	2 cut(s)	96, 656
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	287, 369
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	4 cut(s)	17, 476, 516, 661
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	575, 680
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	420
Tth111I	GACNNNGTC	1 cut(s)	562
Van91I	CCANNNNNTGG	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	545, 633
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.