pycom05g18840

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
21679156 .. 21681366
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18840.2

Sequence Viewer

Length: 1179 bp
ATGATATTGTTTGTTCAAAAAAAGTGGCACTCTCCATCAATTCTCTTTGCATCTCCCAAAAAAAAAAAAAACCAAACTGCAATTAAAAAAAAAAAAGGTAAAAAGCTCAACGCCCACTGGGAACCCGAAGAGGAAGAAATGACCCGATTTCCACCTCCATCTCCTCCTCCTTCTTCTTCATCTTCGCTATTGATTCCGATCGACGAATCCCTAACCCTAATTCCCGGCCTCCCAAACGACGTCGCTGAGCTGATCCTCTCCTTCATCCCCTTCTCCCACCAGGCCCGTCTCCGACCCATCTGCAAATCATGGAGGCTCTTCCTCTCCTCCAAAACCCTAATCGCCCTCCGCCAGACCCACCACCGCAGCAACCTTTCCCACCTCCTCTGCATCTTCCCCCAGGACCCCTCCGTCGCCGCCCCTTACCTCTTCGATCCCCGAACCCTAGCCTGGTGCCCCCTCCCGCCCATGCCCTGCAACCCCCACGTCTACGGCCTCTGCAACTTCACCTCCCTCTCCATTGGGCCCCATCTCTACGTCATCGGCGGCTCGCTCTTCGACACTCGTTCGTTTCCGATCGACCGCCCCTCGCCGTCCTCCGCGGTCTTCCGATTTGACTTCAGCACTTCCTCGTGGGACTTCCTCGCTCCGATGCTCACGCCGCGTGGAAGTTTTGCCTGCGCCGCAGTTCCAAATTCGGGAGAGATTCTCGTCGCTGGCGGCGGATCCCGGCACACTCTGTTCAGCGCGGCTGGAAGCCGAATGAGCTCAGTCGAGCGGTATGACATTGGTAGAAATGAATGGGTTGCAATGGACGGGTTGCCAGGTTTTCGGGCTGGGTGCGCGGGGTTCTTTGTTGGGGATGGCGAGGAGAGGGAGTTCTGGGTTATGGGTGGGTACGGCGAGTCCAGAACAATATCAGGGCTTTTTCCGGTGGACGAGCATTACAGAGATGCCGTGGTAATGGAATTGAAGAATGGGAATGGTGGTTGCAGGTGGCGAGAGGTTGGAGATATGTGGGAAGCAGGGGAGAGGATGAGACTGGGCAAAACTGTTGTCGTGGAAGATGGCGATGATCGCGGTCGACCTGCTGTTTTCATGCTTGATCGGAATGTTATATTCAGGTTGAAAGTTCTCTCTATTTTTCACCACAAGGAGAATGCAGAAGACAGAGCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

393

Amino Acids

43.76

Weight (kDa)

8.73

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 984
AasI GACNNNNNNGTC 1 cut(s) 410
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 2 cut(s) 984, 1096
AccB1I GGYRCC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 778
AccI GTMKAC 2 cut(s) 489, 1084
AccII CGCG 5 cut(s) 602, 664, 749, 845, 1080
AclWI GGATC 4 cut(s) 247, 428, 720, 733
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 604
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 899
AfiI CCNNNNNNNGG 2 cut(s) 450, 698
AgsI TTSAA 3 cut(s) 17, 973, 1129
AjiI CACGTC 1 cut(s) 487
AjnI CCWGG 4 cut(s) 279, 399, 449, 823
AloI GAACNNNNNNTCC 2 cut(s) 863, 895
AluBI AGCT 4 cut(s) 106, 250, 768, 1175
AluI AGCT 4 cut(s) 106, 250, 768, 1175
Alw21I GWGCWC 1 cut(s) 770
Alw26I GTCTC 2 cut(s) 293, 1033
AlwI GGATC 4 cut(s) 247, 428, 720, 733
AoxI GGCC 4 cut(s) 226, 282, 493, 524
ApaI GGGCCC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 694
ArsI GACNNNNNNTTYG 2 cut(s) 1041, 1073
AspLEI GCGC 3 cut(s) 683, 749, 845
AspS9I GGNCC 4 cut(s) 283, 403, 524, 525
AsuC2I CCSGG 2 cut(s) 225, 730
AsuHPI GGTGA 2 cut(s) 499, 1139
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 2 cut(s) 458, 528
BamHI GGATCC 1 cut(s) 725
BanI GGYRCC 1 cut(s) 453
BanII GRGCYC 2 cut(s) 528, 770
BauI CACGAG 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 598, 1173
Bbv12I GWGCWC 1 cut(s) 770
BbvI GCAGC 1 cut(s) 378
BccI CCATC 6 cut(s) 43, 166, 305, 537, 857, 1061
BceAI ACGGC 4 cut(s) 508, 577, 916, 941
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 4 cut(s) 281, 401, 451, 825
BcnI CCSGG 2 cut(s) 225, 730
BcoDI GTCTC 2 cut(s) 293, 1033
BfaI CTAG 1 cut(s) 446
BfuAI ACCTGC 2 cut(s) 984, 1096
BisI GCNGC 7 cut(s) 367, 417, 547, 662, 684, 721, 750
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 7 cut(s) 368, 418, 548, 663, 685, 722, 751
Bme1390I CCNGG 6 cut(s) 225, 281, 401, 451, 730, 825
Bme18I GGWCC 1 cut(s) 403
BmgBI CACGTC 1 cut(s) 487
BmgT120I GGNCC 4 cut(s) 283, 403, 524, 525
BmiI GGNNCC 6 cut(s) 123, 405, 455, 526, 527, 727
BmrFI CCNGG 6 cut(s) 225, 281, 401, 451, 730, 825
BmrI ACTGGG 2 cut(s) 127, 1052
BmsI GCATC 4 cut(s) 59, 399, 642, 943
BmuI ACTGGG 2 cut(s) 127, 1052
BpiI GAAGAC 2 cut(s) 598, 1173
BplI GAGNNNNNCTC 2 cut(s) 693, 725
Bpu1102I GCTNAGC 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 225, 730
BsaBI GATNNNNATC 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 3 cut(s) 399, 600, 957
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 4 cut(s) 494, 524, 863, 893
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 698
Bse1I ACTGG 2 cut(s) 122, 1047
Bse3DI GCAATG 1 cut(s) 816
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 4 cut(s) 281, 401, 451, 825
BseDI CCNNGG 3 cut(s) 399, 600, 957
BseGI GGATG 3 cut(s) 264, 868, 1041
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 450, 698
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 2 cut(s) 237, 783
BseNI ACTGG 2 cut(s) 122, 1047
BseRI GAGGAG 5 cut(s) 153, 156, 316, 374, 884
BseSI GKGCMC 2 cut(s) 458, 528
BseXI GCAGC 1 cut(s) 378
BseYI CCCAGC 1 cut(s) 836
Bsh1236I CGCG 5 cut(s) 602, 664, 749, 845, 1080
Bsh1285I CGRYCG 4 cut(s) 201, 579, 583, 1084
BshFI GGCC 4 cut(s) 228, 284, 495, 526
BshNI GGYRCC 1 cut(s) 453
BsiEI CGRYCG 4 cut(s) 201, 579, 583, 1084
BsiHKAI GWGCWC 1 cut(s) 770
BsiSI CCGG 3 cut(s) 225, 730, 932
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 2 cut(s) 450, 698
BsmAI GTCTC 2 cut(s) 293, 1033
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 650
BsmI GAATGC 1 cut(s) 1165
BsnI GGCC 4 cut(s) 228, 284, 495, 526
Bsp120I GGGCCC 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 458, 528, 770
Bsp143I GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
Bsp1720I GCTNAGC 1 cut(s) 246
BspANI GGCC 4 cut(s) 228, 284, 495, 526
BspCNI CTCAG 2 cut(s) 238, 782
BspFNI CGCG 5 cut(s) 602, 664, 749, 845, 1080
BspLI GGNNCC 6 cut(s) 123, 405, 455, 526, 527, 727
BspMI ACCTGC 2 cut(s) 984, 1096
BspPI GGATC 4 cut(s) 247, 428, 720, 733
BspQI GCTCTTC 2 cut(s) 323, 560
BspT107I GGYRCC 1 cut(s) 453
BsrBI CCGCTC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 816
BsrI ACTGG 2 cut(s) 122, 1047
BssECI CCNNGG 3 cut(s) 399, 600, 957
BssMI GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
BssNI GRCGYC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 631
Bst2BI CACGAG 1 cut(s) 631
Bst2UI CCWGG 4 cut(s) 281, 401, 451, 825
Bst4CI ACNGT 1 cut(s) 1054
Bst6I CTCTTC 4 cut(s) 123, 323, 434, 560
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 551, 679, 718
BstDEI CTNAG 2 cut(s) 246, 769
BstDSI CCRYGG 2 cut(s) 600, 957
BstF5I GGATG 3 cut(s) 264, 868, 1041
BstFNI CGCG 5 cut(s) 602, 664, 749, 845, 1080
BstHHI GCGC 3 cut(s) 683, 749, 845
BstKTI GATC 7 cut(s) 201, 255, 436, 579, 728, 1078, 1108
BstMAI GTCTC 2 cut(s) 293, 1033
BstMBI GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
BstMCI CGRYCG 4 cut(s) 201, 579, 583, 1084
BstMWI GCNNNNNNNGC 5 cut(s) 661, 683, 765, 842, 1077
BstNI CCWGG 4 cut(s) 281, 401, 451, 825
BstSCI CCNGG 6 cut(s) 223, 279, 399, 449, 728, 823
BstSLI GKGCMC 2 cut(s) 458, 528
BstUI CGCG 5 cut(s) 602, 664, 749, 845, 1080
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 2 cut(s) 598, 1173
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
BsuRI GGCC 4 cut(s) 228, 284, 495, 526
BtgI CCRYGG 2 cut(s) 600, 957
BtgZI GCGATG 1 cut(s) 1086
BtrI CACGTC 1 cut(s) 487
BtsCI GGATG 3 cut(s) 264, 868, 1041
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 2 cut(s) 984, 1096
Cac8I GCNNGC 3 cut(s) 551, 679, 718
CfoI GCGC 3 cut(s) 683, 749, 845
Cfr13I GGNCC 4 cut(s) 283, 403, 524, 525
Cfr42I CCGCGG 1 cut(s) 603
Csp6I GTAC 1 cut(s) 898
CspCI CAANNNNNGTGG 2 cut(s) 5, 40
CviAII CATG 3 cut(s) 309, 469, 1099
CviQI GTAC 1 cut(s) 898
DdeI CTNAG 2 cut(s) 246, 769
DpnI GATC 7 cut(s) 200, 254, 435, 578, 727, 1077, 1107
DpnII GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
Eam1104I CTCTTC 4 cut(s) 123, 323, 434, 560
EarI CTCTTC 4 cut(s) 123, 323, 434, 560
EciI GGCGGA 2 cut(s) 338, 738
Ecl136II GAGCTC 1 cut(s) 768
Eco24I GRGCYC 2 cut(s) 528, 770
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 768
Eco57I CTGAAG 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 768
EcoO109I RGGNCCY 2 cut(s) 403, 525
EcoRII CCWGG 4 cut(s) 279, 399, 449, 823
EcoT38I GRGCYC 2 cut(s) 528, 770
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 3 cut(s) 312, 472, 1102
FaiI YATR 7 cut(s) 310, 470, 783, 890, 1016, 1100, 1118
FaqI GGGAC 1 cut(s) 650
FatI CATG 3 cut(s) 308, 468, 1098
FauI CCCGC 2 cut(s) 471, 838
FblI GTMKAC 2 cut(s) 489, 1084
Fnu4HI GCNGC 7 cut(s) 367, 417, 547, 662, 684, 721, 750
FokI GGATG 3 cut(s) 251, 875, 1048
FriOI GRGCYC 2 cut(s) 528, 770
Fsp4HI GCNGC 7 cut(s) 367, 417, 547, 662, 684, 721, 750
FspBI CTAG 1 cut(s) 446
GlaI GCGC 3 cut(s) 682, 748, 844
GluI GCNGC 7 cut(s) 367, 417, 547, 662, 684, 721, 750
GsaI CCCAGC 1 cut(s) 840
HaeIII GGCC 4 cut(s) 228, 284, 495, 526
HapII CCGG 3 cut(s) 225, 730, 932
HhaI GCGC 3 cut(s) 683, 749, 845
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 3 cut(s) 312, 472, 1102
Hin6I GCGC 3 cut(s) 681, 747, 843
HinP1I GCGC 3 cut(s) 681, 747, 843
HincII GTYRAC 1 cut(s) 1085
HindII GTYRAC 1 cut(s) 1085
HinfI GANTC 4 cut(s) 193, 206, 706, 905
HpaII CCGG 3 cut(s) 225, 730, 932
HphI GGTGA 2 cut(s) 499, 1139
Hpy166II GTNNAC 3 cut(s) 490, 937, 1085
Hpy188I TCNGA 6 cut(s) 198, 293, 576, 611, 651, 1110
Hpy188III TCNNGA 2 cut(s) 699, 909
Hpy8I GTNNAC 3 cut(s) 490, 937, 1085
Hpy99I CGWCG 5 cut(s) 206, 242, 245, 416, 716
HpyAV CCTTC 3 cut(s) 180, 271, 280
HpyCH4III ACNGT 1 cut(s) 1054
HpyCH4IV ACGT 3 cut(s) 240, 486, 537
HpyCH4V TGCA 9 cut(s) 50, 80, 303, 390, 477, 501, 809, 993, 1163
HpyF10VI GCNNNNNNNGC 5 cut(s) 661, 683, 765, 842, 1077
HpyF3I CTNAG 2 cut(s) 246, 769
HpySE526I ACGT 3 cut(s) 240, 486, 537
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 3 cut(s) 312, 472, 1102
HspAI GCGC 3 cut(s) 681, 747, 843
KspI CCGCGG 1 cut(s) 603
Kzo9I GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
LguI GCTCTTC 2 cut(s) 323, 560
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 4 cut(s) 59, 399, 642, 943
MaeI CTAG 1 cut(s) 446
MaeII ACGT 3 cut(s) 240, 486, 537
MalI GATC 7 cut(s) 200, 254, 435, 578, 727, 1077, 1107
MbiI CCGCTC 1 cut(s) 778
MboI GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 3 cut(s) 458, 528, 770
MluCI AATT 5 cut(s) 39, 81, 219, 694, 968
MlyI GAGTC 1 cut(s) 914
MmeI TCCRAC 2 cut(s) 316, 988
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 3 cut(s) 225, 730, 932
MspR9I CCNGG 6 cut(s) 225, 281, 401, 451, 730, 825
Mva1269I GAATGC 1 cut(s) 1165
MvaI CCWGG 4 cut(s) 281, 401, 451, 825
MvnI CGCG 5 cut(s) 602, 664, 749, 845, 1080
MwoI GCNNNNNNNGC 5 cut(s) 661, 683, 765, 842, 1077
NciI CCSGG 2 cut(s) 225, 730
NdeII GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
NlaIII CATG 3 cut(s) 312, 472, 1102
NlaIV GGNNCC 6 cut(s) 123, 405, 455, 526, 527, 727
PaqCI CACCTGC 1 cut(s) 984
PciSI GCTCTTC 2 cut(s) 323, 560
PctI GAATGC 1 cut(s) 1165
PfeI GAWTC 3 cut(s) 193, 206, 706
PkrI GCNGC 7 cut(s) 368, 418, 548, 663, 685, 722, 751
Ple19I CGATCG 2 cut(s) 201, 579
PleI GAGTC 1 cut(s) 913
PpsI GAGTC 1 cut(s) 913
PpuMI RGGWCCY 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 770
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 4 cut(s) 279, 399, 449, 823
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 4 cut(s) 279, 399, 449, 823
PspN4I GGNNCC 6 cut(s) 123, 405, 455, 526, 527, 727
PspOMI GGGCCC 1 cut(s) 524
PspPI GGNCC 4 cut(s) 283, 403, 524, 525
PspPPI RGGWCCY 1 cut(s) 403
PsuI RGATCY 1 cut(s) 725
PvuI CGATCG 2 cut(s) 201, 579
RsaI GTAC 1 cut(s) 899
RsaNI GTAC 1 cut(s) 898
SacI GAGCTC 1 cut(s) 770
SacII CCGCGG 1 cut(s) 603
SalI GTCGAC 1 cut(s) 1083
SapI GCTCTTC 2 cut(s) 323, 560
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 7 cut(s) 367, 417, 547, 662, 684, 721, 750
Sau3AI GATC 7 cut(s) 198, 252, 433, 576, 725, 1075, 1105
Sau96I GGNCC 4 cut(s) 283, 403, 524, 525
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 6 cut(s) 225, 281, 401, 451, 730, 825
SduI GDGCHC 3 cut(s) 458, 528, 770
SfaNI GCATC 4 cut(s) 59, 399, 642, 943
Sfr303I CCGCGG 1 cut(s) 603
SgrBI CCGCGG 1 cut(s) 603
SinI GGWCC 1 cut(s) 403
Sse9I AATT 5 cut(s) 39, 81, 219, 694, 968
SspMI CTAG 1 cut(s) 446
SstI GAGCTC 1 cut(s) 770
StyD4I CCNGG 6 cut(s) 223, 279, 399, 449, 728, 823
TaaI ACNGT 1 cut(s) 1054
TaiI ACGT 3 cut(s) 243, 489, 540
TaqI TCGA 6 cut(s) 201, 432, 558, 579, 774, 1084
TasI AATT 5 cut(s) 39, 81, 219, 694, 968
TauI GCSGC 6 cut(s) 419, 549, 664, 686, 723, 752
TfiI GAWTC 3 cut(s) 193, 206, 706
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 122
TseI GCWGC 1 cut(s) 366
TspDTI ATGAA 4 cut(s) 168, 253, 813, 1087
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 694
XmiI GTMKAC 2 cut(s) 489, 1084
XspI CTAG 1 cut(s) 446
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.