Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002250

Physical Location & Seq

Genomic Coordinates Reverse (-)

53812511 .. 53812873

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTAACCCCACACGGGAGCTTCGCATGTGCGAAGGTTCCAGATTCCGACCAGATCATCGTCGCCGGAGGCGGTTCCCGCCACACCATGTTCAATGCCACCGGGAGCAGGATGACCTCGGTGGAGAGGTATGATATATGTAGAGACGAGTGGGTGGCAATGGAAGGGCTACATAGCTTTCGGGCCGGGTGTGTGGGGTTCTTTGCTGGAAATGTGGAGGAGAGGGAGTTTTGGGTGATGGGCGAGTACGGCCAGGCCATGACTATATCAGAGGTGGTGCCGGTGGACAAGTATTACCGGAATGCGGTGGTGATGGAATTGACGAATCGTAATAGTGATGGCAGGTGGAGGGAGACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

120

Amino Acids

13.44

Weight (kDa)

5.31

Isoelectric Point (pI)

24.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03030
fragaria_vesca	FvH4_2g22060 FvH4_2g22060
malus_domestica	MD00G1178000.v1.1 MD05G1201800.v1.1 MD10G1188500.v1.1 MD10G1189700.v1.1 MD12G1052300.v1.1 MD14G1119000.v1.1 MD15G1271700.v1.1
prunus_persica	Prupe.4G114400_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1 Prupe.8G228200_v2.0.a1
pyrus_communis	pycom05g18840 pycom10g16300
rosa_chinensis	RchiOBHm_Chr2g0136411 RchiOBHm_Chr6g0288931
rosa_laevigata	RLG00000012347
rosa_multiflora	Rmu_co8509725.1_g000001 Rmu_sc0000367.1_g000165
rosa_roxburghii	Rroxscaffold_4G00329370 Rroxscaffold_4G00329620 Rroxscaffold_7G00179740 Rroxscaffold_7G00192030
rosa_rugosa	Rorug02G0545100 Rorug04G0010600 Rorug04G0052600 Rorug06G0199300 Rorug06G0199400
rosa_samantha	Rh2AG381200 Rh2AG483900 Rh2CG470000 Rh2DG404200 Rh4DG079800 Rh5CG423900 Rh5DG409600 Rh6AG310800 Rh6BG317300 Rh6CG324000 Rh6DG309700 Rh7BG294900
rosa_wichuraiana	Rw6G026870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	3 cut(s)	72, 79, 305
AcoI	YGGCCR	1 cut(s)	250
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	15, 108, 304
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	2 cut(s)	21, 177
AluI	AGCT	2 cut(s)	21, 177
Alw26I	GTCTC	2 cut(s)	138, 347
AoxI	GGCC	3 cut(s)	183, 250, 255
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	103, 187
AsuHPI	GGTGA	2 cut(s)	247, 322
BanI	GGYRCC	1 cut(s)	277
BccI	CCATC	3 cut(s)	232, 307, 332
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	2 cut(s)	103, 187
BcoDI	GTCTC	2 cut(s)	138, 347
BfuAI	ACCTGC	1 cut(s)	333
Bme1390I	CCNGG	3 cut(s)	103, 187, 254
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	39, 76, 279
BmrFI	CCNGG	3 cut(s)	103, 187, 254
BpuMI	CCSGG	2 cut(s)	103, 187
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 108, 304
Bse118I	RCCGGY	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	15, 108, 304
BseMI	GCAATG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	185, 252, 257
BshNI	GGYRCC	1 cut(s)	277
BsiSI	CCGG	5 cut(s)	66, 102, 186, 281, 298
BslI	CCNNNNNNNGG	3 cut(s)	15, 108, 304
BsmAI	GTCTC	2 cut(s)	138, 347
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	185, 252, 257
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	3 cut(s)	72, 79, 305
BspANI	GGCC	3 cut(s)	185, 252, 257
BspLI	GGNNCC	3 cut(s)	39, 76, 279
BspMI	ACCTGC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	138, 347
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 249
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	3 cut(s)	101, 185, 252
BsuRI	GGCC	3 cut(s)	185, 252, 257
BtsCI	GGATG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	333
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	27, 88, 259
CviJI	RGCY	6 cut(s)	21, 169, 177, 185, 252, 257
CviKI_1	RGCY	6 cut(s)	21, 169, 177, 185, 252, 257
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	3 cut(s)	30, 91, 262
FaiI	YATR	8 cut(s)	28, 89, 132, 137, 139, 174, 260, 266
FatI	CATG	3 cut(s)	26, 87, 258
FauI	CCCGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	185, 252, 257
HapII	CCGG	5 cut(s)	66, 102, 186, 281, 298
Hin1II	CATG	3 cut(s)	30, 91, 262
HinfI	GANTC	2 cut(s)	44, 325
HpaII	CCGG	5 cut(s)	66, 102, 186, 281, 298
HphI	GGTGA	2 cut(s)	247, 322
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	49, 271
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	28, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 249
Hsp92II	CATG	3 cut(s)	30, 91, 262
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	18, 105
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MluCI	AATT	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	62, 120, 127, 211, 216, 265, 342
MspI	CCGG	5 cut(s)	66, 102, 186, 281, 298
MspR9I	CCNGG	3 cut(s)	103, 187, 254
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	78, 249
NciI	CCSGG	2 cut(s)	103, 187
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	3 cut(s)	30, 91, 262
NlaIV	GGNNCC	3 cut(s)	39, 76, 279
NspI	RCATGY	1 cut(s)	30
PaqCI	CACCTGC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	44, 325
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	39, 76, 279
PspPI	GGNCC	1 cut(s)	183
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	3 cut(s)	103, 187, 254
SetI	ASST	8 cut(s)	23, 39, 119, 131, 179, 276, 347, 361
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	3 cut(s)	72, 79, 305
StyD4I	CCNGG	3 cut(s)	101, 185, 252
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	44, 325
XceI	RCATGY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.