Rorug04G0010600

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002250
Physical Location & Seq
Reverse (-)
1835195 .. 1835631
437 bp
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UTR
Exon/CDS
Intron
Rorug04G0010600.1

Sequence Viewer

Length: 225 bp
ATGGATGCTCGTCGACAGGTTGCTGCGAGTGGAAGCCAACGAGTGCAGAAGGAAAAGGATAATACAAAGAAACAGGCAATGAGCAGAAGGATGATGGCAGCGGATGAGCAAGGCGACATTAATGATATGGCTGATGCCTTCATCAAGAAGTTCAGGAACCAGCTAAAGATTCAAAGGGAAGAATCATTCAAAAGGTTTCAGGAAATGATTGCTCGTGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like Kelch_1

Protein Analysis

74

Amino Acids

8.65

Weight (kDa)

10.19

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 37 - 72 1.4e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 13
AciI CCGC 1 cut(s) 101
AgsI TTSAA 2 cut(s) 173, 190
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 23, 98
AseI ATTAAT 1 cut(s) 120
BauI CACGAG 1 cut(s) 213
BbvI GCAGC 2 cut(s) 10, 110
BccI CCATC 1 cut(s) 88
BisI GCNGC 2 cut(s) 24, 99
BlsI GCNGC 2 cut(s) 25, 100
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 84
BseGI GGATG 3 cut(s) 10, 96, 109
BseMI GCAATG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 10, 110
BsgI GTGCAG 1 cut(s) 65
BspACI CCGC 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 84
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 10, 96, 109
BstV1I GCAGC 2 cut(s) 10, 110
BtsCI GGATG 3 cut(s) 10, 96, 109
CviJI RGCY 3 cut(s) 36, 131, 163
CviKI_1 RGCY 3 cut(s) 36, 131, 163
FaiI YATR 1 cut(s) 128
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 24, 99
FokI GGATG 3 cut(s) 17, 103, 116
Fsp4HI GCNGC 2 cut(s) 24, 99
GluI GCNGC 2 cut(s) 24, 99
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HinfI GANTC 2 cut(s) 169, 182
Hpy166II GTNNAC 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 145, 154, 200
Hpy8I GTNNAC 1 cut(s) 14
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 43, 81, 148
HpyCH4V TGCA 1 cut(s) 46
LpnPI CCDG 5 cut(s) 2, 59, 139, 173, 185
Lsp1109I GCAGC 2 cut(s) 10, 110
LweI GCATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 191
MseI TTAA 2 cut(s) 120, 223
MspA1I CMGCKG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 169, 182
PkrI GCNGC 2 cut(s) 25, 100
PshBI ATTAAT 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 158
SalI GTCGAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 120, 223
SatI GCNGC 2 cut(s) 24, 99
SetI ASST 3 cut(s) 21, 165, 197
SfaNI GCATC 1 cut(s) 124
SsiI CCGC 1 cut(s) 101
TaqI TCGA 1 cut(s) 13
TfiI GAWTC 2 cut(s) 169, 182
Tru1I TTAA 2 cut(s) 120, 223
Tru9I TTAA 2 cut(s) 120, 223
TseI GCWGC 2 cut(s) 23, 98
TspDTI ATGAA 1 cut(s) 130
VspI ATTAAT 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.